The DOI matches its Crossref record; 54 of the 54 references it cites were found in a registry or an index.
Aromatic amino acids in the finger domain of the FMRFamide-gated Na$$^+$$ channel are involved in the FMRFamide recognition and the activation
Open accessPublished version of a preprint
Abstract
FMRFamide-gated Na+ channel (FaNaC) is a member of the DEG/ENaC family and activated by a neuropeptide, FMRFamide. Structural information about the FMRFamide-dependent gating is, however, still elusive. Because two phenylalanines of FMRFamide are essential for the activation of FaNaC, we hypothesized that aromatic-aromatic interaction between FaNaC and FMRFamide is critical for FMRFamide recognition and/or the activation gating. Here, we focused on eight conserved aromatic residues in the finger domain of FaNaCs and tested our hypothesis by mutagenic analysis and in silico docking simulations. The mutation of conserved aromatic residues in the finger domain reduced the FMRFamide potency, suggesting that the conserved aromatic residues are involved in the FMRFamide-dependent activation. The kinetics of the FMRFamide-gated currents were also modified substantially in some mutants. Some results of docking simulations were consistent with a hypothesis that the aromatic-aromatic interaction between the aromatic residues in FaNaC and FMRFamide is involved in the FMRFamide recognition. Collectively, our results suggest that the conserved aromatic residues in the finger domain of FaNaC are important determinants of the ligand recognition and/or the activation gating in FaNaC.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
UCSF Chimera—A visualization system for exploratory research and analysis
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20084 · Cited by 45,828
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Trott, O., & Olson, A. J. (2010) · Journal of Computational Chemistry · doi:10.1002/jcc.21334 · Cited by 38,412
Comparative Protein Modelling by Satisfaction of Spatial Restraints
Šali, A., & Blundell, T. L. (1993) · Journal of Molecular Biology · doi:10.1006/jmbi.1993.1626 · Cited by 12,977
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
Lamiable, A., Thévenet, P., Rey, J., Vavrusa, M., Derreumaux, P., & Tufféry, P. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw329 · Cited by 1,053
Structure of acid-sensing ion channel 1 at 1.9 Å resolution and low pH
Jasti, J., Furukawa, H., Gonzales, E. B., & Gouaux, E. (2007) · Nature · doi:10.1038/nature06163 · Cited by 1,043
Kellenberger, S., & Schild, L. (2002) · Physiological Reviews · doi:10.1152/physrev.00007.2002 · Cited by 1,026
Colquhoun, D. (1998) · British Journal of Pharmacology · doi:10.1038/sj.bjp.0702164 · Cited by 881
Desensitized states prolong GABAA channel responses to brief agonist pulses
Jones, M. V., & Westbrook, G. L. (1995) · Neuron · doi:10.1016/0896-6273(95)90075-6 · Cited by 583
Cloning of the amiloride-sensitive FMRFamide peptide-gated sodium channel
Lingueglia, E., Champigny, G., Lazdunski, M., & Barbry, P. (1995) · Nature · doi:10.1038/378730a0 · Cited by 391
Cited by
Structural basis for excitatory neuropeptide signaling
Kalienkova, V., Dandamudi, M., Paulino, C., & Lynagh, T. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-01198-y · Cited by 12
Metadata
- Authors
- Furukawa, Y., & Tagashira, I.
- Affiliations
- Hiroshima University (JP)
- Corresponding author
- Furukawa, Yasuo
- ORCID
- Furukawa, Yasuo
- Venue
- Pflügers Archiv - European Journal of Physiology
- Published
- 2023-06-08
- Volume
- 475
- Issue
- 8
- Pages
- 975-993
- ISSN
- 0031-6768 (ISSN-L)
- 1432-2013
- OpenAlex
- W4379768709
- Cited by
- 4
- References
- 54
- Citations by year
- 2025: 2 · 2024: 2
- FWCI
- 0.36
- Type
- journal article
- Language
- en
- Open access
- green
- dx.doi.org
- Licence
- www.springernature.com/gp/researchers/text-and-data-mining (tdm)
- www.springernature.com/gp/researchers/text-and-data-mining (vor)
- Locations
- Pflügers Archiv - European Journal of Physiology (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- Funders
- Japan Society for the Promotion of Science (15K07149)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ion channel regulation and function
- Life Sciences › Neuroscience › Sensory Systems › Ion Channels and Receptors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nicotinic Acetylcholine Receptors Study
- Keywords
- finger domain, aromatic amino acids, aromatic-aromatic interactions, conserved residues, site-directed mutagenesis, molecular docking
- MeSH terms
- Sodium Channels, FMRFamide, Amino Acids, Aromatic
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.