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Aromatic amino acids in the finger domain of the FMRFamide-gated Na$$^+$$ channel are involved in the FMRFamide recognition and the activation
Open accessPublished version of a preprint
Abstract
FMRFamide-gated Na+ channel (FaNaC) is a member of the DEG/ENaC family and activated by a neuropeptide, FMRFamide. Structural information about the FMRFamide-dependent gating is, however, still elusive. Because two phenylalanines of FMRFamide are essential for the activation of FaNaC, we hypothesized that aromatic-aromatic interaction between FaNaC and FMRFamide is critical for FMRFamide recognition and/or the activation gating. Here, we focused on eight conserved aromatic residues in the finger domain of FaNaCs and tested our hypothesis by mutagenic analysis and in silico docking simulations. The mutation of conserved aromatic residues in the finger domain reduced the FMRFamide potency, suggesting that the conserved aromatic residues are involved in the FMRFamide-dependent activation. The kinetics of the FMRFamide-gated currents were also modified substantially in some mutants. Some results of docking simulations were consistent with a hypothesis that the aromatic-aromatic interaction between the aromatic residues in FaNaC and FMRFamide is involved in the FMRFamide recognition. Collectively, our results suggest that the conserved aromatic residues in the finger domain of FaNaC are important determinants of the ligand recognition and/or the activation gating in FaNaC.
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Cites
UCSF Chimera—A visualization system for exploratory research and analysis
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20084 · Cited by 45,828
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Trott, O., & Olson, A. J. (2010) · Journal of Computational Chemistry · doi:10.1002/jcc.21334 · Cited by 38,412
Comparative Protein Modelling by Satisfaction of Spatial Restraints
Šali, A., & Blundell, T. L. (1993) · Journal of Molecular Biology · doi:10.1006/jmbi.1993.1626 · Cited by 12,977
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
Lamiable, A., Thévenet, P., Rey, J., Vavrusa, M., Derreumaux, P., & Tufféry, P. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw329 · Cited by 1,053
Structure of acid-sensing ion channel 1 at 1.9 Å resolution and low pH
Jasti, J., Furukawa, H., Gonzales, E. B., & Gouaux, E. (2007) · Nature · doi:10.1038/nature06163 · Cited by 1,043
Kellenberger, S., & Schild, L. (2002) · Physiological Reviews · doi:10.1152/physrev.00007.2002 · Cited by 1,026
Colquhoun, D. (1998) · British Journal of Pharmacology · doi:10.1038/sj.bjp.0702164 · Cited by 881
Desensitized states prolong GABAA channel responses to brief agonist pulses
Jones, M. V., & Westbrook, G. L. (1995) · Neuron · doi:10.1016/0896-6273(95)90075-6 · Cited by 583
Cloning of the amiloride-sensitive FMRFamide peptide-gated sodium channel
Lingueglia, E., Champigny, G., Lazdunski, M., & Barbry, P. (1995) · Nature · doi:10.1038/378730a0 · Cited by 391
Hanukoglu, I., & Hanukoglu, A. (2016) · Gene · doi:10.1016/j.gene.2015.12.061 · Cited by 390
A heteromeric Texas coral snake toxin targets acid-sensing ion channels to produce pain
Bohlen, C. J., Chesler, A. T., Sharif-Naeini, R., Medzihradszky, K. F., Zhou, S., King, D., Sánchez, E. E., Burlingame, A. L., Basbaum, A. I., & Julius, D. (2011) · Nature · doi:10.1038/nature10607 · Cited by 336
ENaC at the Cutting Edge: Regulation of Epithelial Sodium Channels by Proteases
Kleyman, T. R., Carattino, M. D., & Hughey, R. P. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.r800083200 · Cited by 292
Baconguis, I., Bohlen, C. J., Goehring, A., Julius, D., & Gouaux, E. (2014) · Cell · doi:10.1016/j.cell.2014.01.011 · Cited by 286
Structural plasticity and dynamic selectivity of acid-sensing ion channel–spider toxin complexes
Baconguis, I., & Gouaux, E. (2012) · Nature · doi:10.1038/nature11375 · Cited by 257
Gating mechanisms of acid-sensing ion channels
Yoder, N., Yoshioka, C., & Gouaux, E. (2018) · Nature · doi:10.1038/nature25782 · Cited by 245
Askwith, C. C., Cheng, C., Ikuma, M., Benson, C. J., Price, M. P., & Welsh, M. J. (2000) · Neuron · doi:10.1016/s0896-6273(00)81144-7 · Cited by 221
Structure of the human epithelial sodium channel by cryo-electron microscopy
Noreng, S., Bharadwaj, A. S., Posert, R., Yoshioka, C., & Baconguis, I. (2018) · eLife · doi:10.7554/elife.39340 · Cited by 195
[17] Cut-open oocyte voltage-clamp technique
Stefani, E., & Bezanilla, F. (1998) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(98)93020-8 · Cited by 191
Novel voltage clamp to record small, fast currents from ion channels expressed in Xenopus oocytes
Taglialatela, M., Toro, L., & Stefani, E. (1992) · Biophysical Journal · doi:10.1016/s0006-3495(92)81817-9 · Cited by 179
Structure of the Acid-sensing ion channel 1 in complex with the gating modifier Psalmotoxin 1
Dawson, R. J. P., Benz, J., Stohler, P., Tetaz, T., Joseph, C., Huber, S., Schmid, G., Huegin, D., Pflimlin, P., Trube, G., et al. (2012) · Nature Communications · doi:10.1038/ncomms1917 · Cited by 178
Structure and activity of the acid-sensing ion channels
Sherwood, T. W., Frey, E. N., & Askwith, C. C. (2012) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00188.2012 · Cited by 168
Chen, X., Kalbacher, H., & Gründer, S. (2006) · The Journal of General Physiology · doi:10.1085/jgp.200509409 · Cited by 144
The First Peptide-Gated Ion Channel
Cottrell, G. A. (1997) · Journal of Experimental Biology · doi:10.1242/jeb.200.18.2377 · Cited by 119
Lingueglia, É., Deval, E., & Lazdunski, M. (2006) · Peptides · doi:10.1016/j.peptides.2005.06.037 · Cited by 112
A peptide-gated ion channel from the freshwater polyp Hydra
Golubovic, A., Kuhn, A., Williamson, M., Kalbacher, H., Holstein, T. W., Grimmelikhuijzen, C. J. P., & Gründer, S. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m706849200 · Cited by 101
Modeling mutations in protein structures
Feyfant, E., Šali, A., & Fiser, A. (2007) · Protein Science · doi:10.1110/ps.072855507 · Cited by 90
Xie, J., Price, M. P., Wemmie, J. A., Askwith, C. C., & Welsh, M. J. (2003) · Journal of Neurophysiology · doi:10.1152/jn.00707.2002 · Cited by 81
PDBe: Protein Data Bank in Europe
Velankar, S. S., Alhroub, Y., Alili, A., Best, C., Boutselakis, H., Caboche, S., Conroy, M. J., Dana, J. M., van Ginkel, G., Golovin, A., et al. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq985 · Cited by 81
Cottrell, G. A., Green, K. A., & Davies, N. W. (1990) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/bf00382698 · Cited by 71
Inherent Dynamics of the Acid-Sensing Ion Channel 1 Correlates with the Gating Mechanism
Yang, H., Yu, Y., Li, W., Yu, F., Cao, H., Xu, T., & Jiang, H. (2009) · PLoS Biology · doi:10.1371/journal.pbio.1000151 · Cited by 67
Selective modulation of heteromeric ASIC proton-gated channels by neuropeptide FF
Catarsi, S., Babinski, K., & Séguéla, P. (2001) · Neuropharmacology · doi:10.1016/s0028-3908(01)00107-1 · Cited by 65
Three homologous subunits form a high affinity peptide-gated ion channel in Hydra
Dürrnagel, S., Kuhn, A., Tsiairis, C. D., Williamson, M., Kalbacher, H., Grimmelikhuijzen, C. J. P., Holstein, T. W., & Gründer, S. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.059998 · Cited by 58
Zhao, B., Rassendren, F., Kaang, B., Furukawa, Y., Kubo, T., & Kandel, E. R. (1994) · Neuron · doi:10.1016/0896-6273(94)90058-2 · Cited by 56
Self-citationProtonation controls ASIC1a activity via coordinated movements in multiple domains
Bonifacio, G. J., Lelli, C. I. S., & Kellenberger, S. B. (2013) · The Journal of General Physiology · doi:10.1085/jgp.201311053 · Cited by 44
Jeziorski, M. C., Green, K. A., Sommerville, J., & Cottrell, G. A. (2000) · The Journal of Physiology · doi:10.1111/j.1469-7793.2000.00013.x · Cited by 43
Neuronal Expression of an FMRFamide-Gated Na+Channel and Its Modulation by Acid pH
Perry, S. J., Straub, V. A., Schofield, M. G., Burke, J. F., & Benjamin, P. R. (2001) · Journal of Neuroscience · doi:10.1523/jneurosci.21-15-05559.2001 · Cited by 41
Schmidt, A., Bauknecht, P., Williams, E. A., Augustinowski, K., Gründer, S., & Jékely, G. (2018) · The FASEB Journal · doi:10.1096/fj.201800274r · Cited by 39
Molecular cloning and functional characterization of the Aplysia FMRFamide-gated Na+ channel
Furukawa, Y., Miyawaki, Y., & Abe, G. (2005) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-005-1498-z · Cited by 32
Self-citationHigh Ca2+ permeability of a peptide-gated DEG/ENaC fromHydra
Dürrnagel, S., Falkenburger, B. H., & Gründer, S. (2012) · The Journal of General Physiology · doi:10.1085/jgp.201210798 · Cited by 29
The Thumb Domain Mediates Acid-sensing Ion Channel Desensitization
Krauson, A. J., & Carattino, M. D. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m115.702316 · Cited by 28
Reiners, M., Margreiter, M. A., Oslender-Bujotzek, A., Rossetti, G., Gründer, S., & Schmidt, A. (2018) · Molecular Pharmacology · doi:10.1124/mol.118.112375 · Cited by 24
Location of a ligand recognition site of FMRFamide‐gated Na+ channels
Cottrell, G. A., Jeziorski, M. C., & Green, K. A. (2001) · FEBS Letters · doi:10.1016/s0014-5793(01)02081-6 · Cited by 22
Bargeton, B., Iwaszkiewicz, J., Bonifacio, G. J., Roy, S., Zoete, V., & Kellenberger, S. (2019) · Scientific Reports · doi:10.1038/s41598-018-37426-5 · Cited by 22
Dandamudi, M., Hausen, H., & Lynagh, T. (2022) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2022.102086 · Cited by 21
Domain near TM1 influences agonist and antagonist responses of peptide-gated Na+ channels
Cottrell, G. A. (2005) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-005-1385-7 · Cited by 17
Neuropeptides and degenerin/epithelial Na+ channels: a relationship from mammals to cnidarians
Gründer, S., Ortega-Ramírez, A., & Jékely, G. (2022) · The Journal of Physiology · doi:10.1113/jp282309 · Cited by 17
Single‐channel currents of a peptide‐gated sodium channel expressed in Xenopus oocytes
Zhainazarov, A. B., & Cottrell, G. A. (1998) · The Journal of Physiology · doi:10.1111/j.1469-7793.1998.019by.x · Cited by 15
Block of the Helix FMRFamide‐gated Na+ channel by FMRFamide and its analogues
Green, K. A., & Cottrell, G. A. (1999) · The Journal of Physiology · doi:10.1111/j.1469-7793.1999.0047o.x · Cited by 15
Activity modes and modulation of the peptide-gated Na+ channel of Helix neurones
Green, K. A., & Cottrell, G. A. (2002) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-001-0750-4 · Cited by 14
Niu, Y.-Y., Yang, Y., Liu, Y., Huang, L.-D., Yang, X.-N., Fan, Y.-Z., Cheng, X., Cao, P., Hu, Y.-M., Li, L., et al. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m115.710251 · Cited by 12
Kodani, Y., & Furukawa, Y. (2010) · ZOOLOGICAL SCIENCE · doi:10.2108/zsj.27.440 · Cited by 8
Self-citationModulation of the FMRFamide-gated Na+ channel by external Ca2+
Akihiko, F., Kodani, Y., & Furukawa, Y. (2017) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-017-2021-z · Cited by 6
Self-citationKodani, Y., & Furukawa, Y. (2014) · The Journal of Physiological Sciences · doi:10.1007/s12576-013-0303-6 · Cited by 4
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Metadata
- Authors
- Furukawa, Y., & Tagashira, I.
- Affiliations
- Hiroshima University (JP)
- Corresponding author
- Furukawa, Yasuo
- ORCID
- Furukawa, Yasuo
- Venue
- Pflügers Archiv - European Journal of Physiology
- Published
- 2023-06-08
- Volume
- 475
- Issue
- 8
- Pages
- 975-993
- ISSN
- 0031-6768 (ISSN-L)
- 1432-2013
- OpenAlex
- W4379768709
- Cited by
- 4
- References
- 54
- Citations by year
- 2025: 2 · 2024: 2
- FWCI
- 0.36
- Type
- journal article
- Language
- en
- Open access
- green
- dx.doi.org
- Licence
- www.springernature.com/gp/researchers/text-and-data-mining (tdm)
- www.springernature.com/gp/researchers/text-and-data-mining (vor)
- Locations
- Pflügers Archiv - European Journal of Physiology (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- Funders
- Japan Society for the Promotion of Science (15K07149)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ion channel regulation and function
- Life Sciences › Neuroscience › Sensory Systems › Ion Channels and Receptors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nicotinic Acetylcholine Receptors Study
- Keywords
- finger domain, aromatic amino acids, aromatic-aromatic interactions, conserved residues, site-directed mutagenesis, molecular docking
- MeSH terms
- Sodium Channels, FMRFamide, Amino Acids, Aromatic
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