Selecting the Number of States in Hidden Markov Models: Pragmatic Solutions Illustrated Using Animal Movement

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Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions

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Classifying movement behaviour in relation to environmental conditions using hidden Markov models

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Analysis of animal accelerometer data using hidden Markov models

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Sex‐specific and individual preferences for hunting strategies in white sharks

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A multivariate mixed hidden Markov model for blue whale behaviour and responses to sound exposure

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Nonparametric Inference in Hidden Markov Models Using P-Splines

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Ungulate movement in an extreme seasonal environment: year‐round movement patterns of high‐arctic muskoxen

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Optimal hunting conditions drive circalunar behavior of a diurnal carnivore

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Incorporating periodic variability in hidden Markov models for animal movement

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Hidden Markov Models for Time Series: An Introduction Using R, Second Edition

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Modeling the Diving Behavior of Whales: A Latent-Variable Approach with Feedback and Semi-Markovian Components

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Flexible Latent‐State Modelling of Old Faithful's Eruption Inter‐Arrival Times in 2009

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Statistical modelling of animal movement: a myopic review and a discussion of good practicePreprint

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Sensitivity and specificity of information criteria

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Uncovering ecological state dynamics with hidden Markov models

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Understanding the ontogeny of foraging behaviour: insights from combining marine predator bio-logging with satellite-derived oceanography in hidden Markov models

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Hidden Markov models: Pitfalls and opportunities in ecology

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Joint modelling of multi‐scale animal movement data using hierarchical hidden Markov models

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Identifying stationary phases in multivariate time series for highlighting behavioural modes and home range settlements

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State‐switching continuous‐time correlated random walks

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Fishing Gear Identification From Vessel-Monitoring-System-Based Fishing Vessel Trajectories

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Bridging the gaps in animal movement: hidden behaviors and ecological relationships revealed by integrated data streams

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Sex‐specific effects of wind on the flight decisions of a sexually dimorphic soaring bird

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Behavioral state resource selection in invasive wild pigs in the Southeastern United States

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Energetics as common currency for integrating high resolution activity patterns into dynamic energy budget-individual based models

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Hidden Markov models identify major movement modes in accelerometer and magnetometer data from four albatross species

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Flexible hidden Markov models for behaviour-dependent habitat selection

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Effects of a seismic survey on movement of free-ranging Atlantic cod

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Fine-scale movement patterns and behavioral states of gray triggerfish Balistes capriscus determined from acoustic telemetry and hidden Markov models

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Individuality counts: A new comprehensive approach to foraging strategies of a tropical marine predator

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Worth the effort? A practical examination of random effects in hidden Markov models for animal telemetry data

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Computer‐aided diagnosis system for ulcer detection in wireless capsule endoscopy images

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An application of upscaled optimal foraging theory using hidden Markov modelling: year-round behavioural variation in a large arctic herbivore

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Commentary on latent class, latent profile, and latent transition analysis for characterizing individual differences in learning

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Seabirds as environmental indicators: foraging behaviour and ecophysiology of common diving petrels (Pelecanoides urinatrix) reflect local-scale differences in prey availability

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Hidden Markov and Semi-Markov Models with Multivariate Leptokurtic-Normal Components for Robust Modeling of Daily Returns Series

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Initialization of Hidden Markov and Semi‐Markov Models: A Critical Evaluation of Several Strategies

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Understanding decision making in a food-caching predator using hidden Markov models

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Quantifying behavior and life‐history events of an Arctic ungulate from year‐long continuous accelerometer data

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A copula-based multivariate hidden Markov model for modelling momentum in football

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A hierarchical path-segmentation movement ecology framework

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“Too Big To Ignore”: A feasibility analysis of detecting fishing events in Gabonese small-scale fisheries

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Sex and Size Influence the Spatiotemporal Distribution of White Sharks, With Implications for Interactions With Fisheries and Spatial Management in the Southwest Indian Ocean

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GPS telemetry for small seabirds: using hidden Markov models to infer foraging behaviour of Common Diving Petrels (Pelecanoides urinatrix urinatrix)

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The hidden brain-state dynamics of tACS aftereffects

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Unsupervised discovery of behaviorally relevant brain states in rats playing hide-and-seek

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Spline‐based nonparametric inference in general state‐switching models

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Incorporating movement patterns to discern habitat selection: black bears as a case study

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Caution is warranted when using animal space-use and movement to infer behavioral states

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Activity modulation and selection for forests help giant anteaters to cope with temperature changes

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Understanding narwhal diving behaviour using Hidden Markov Models with dependent state distributions and long range dependence

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Identifying latent behavioural states in animal movement with M4, a nonparametric Bayesian method

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Dynamic-Parameter Movement Models Reveal Drivers of Migratory Pace in a Soaring Bird

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Effects of 2D Seismic on Snow Crab Movement Behavior

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Searching on the edge: dynamic oceanographic features increase foraging opportunities in a small pelagic seabird

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Evaluating the constraints governing activity patterns of a coastal marine top predator

Byrnes, E. E., Daly, R., Barajas, V. L., Langrock, R., & Gleiss, A. C. (2021) · Marine Biology · doi:10.1007/s00227-020-03803-w · Cited by 23 · see citing works

Modelling state‐transition dynamics in resting‐state brain signals by the hidden Markov and Gaussian mixture models

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A Joint Modeling Approach for Childhood Meat, Fish and Egg Consumption and the Risk of Advanced Islet Autoimmunity

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Hidden semi-Markov-switching quantile regression for time series

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Automatic selection of the number of clusters using Bayesian clustering and sparsity‐inducing priors

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Quantile hidden semi-Markov models for multivariate time series

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Crabs ride the tide: incoming tides promote foraging of Giant Mud Crab (Scylla serrata)

Hewitt, D. E., Johnson, D. D., Suthers, I. M., & Taylor, M. D. (2023) · Movement Ecology · doi:10.1186/s40462-023-00384-3 · Cited by 21 · see citing works

Effects of seismic airgun playbacks on swimming patterns and behavioural states of Atlantic cod in a net pen

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Integrated Population Models: Achieving Their Potential

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Shift in Social Media App Usage During COVID-19 Lockdown and Clinical Anxiety Symptoms: Machine Learning–Based Ecological Momentary Assessment Study

Ryu, J., Sükei, E., Norbury, A., Liu, S. H., Campaña-Montes, J. J., Baca‐García, E., Artés-Rodrı́guez, A., & Pérez-Rodríguez, M. M. (2021) · JMIR Mental Health · doi:10.2196/30833 · Cited by 19 · see citing works

Football tracking data: a copula-based hidden Markov model for classification of tactics in football

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Drivers of polar bear behavior and the possible effects of prey availability on foraging strategy

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Beetles on the move: Not‐just‐a‐technical review of beetles' radio‐tracking

Růžičková, J., & Elek, Z. (2022) · Entomologia Experimentalis et Applicata · doi:10.1111/eea.13260 · Cited by 19 · see citing works

How to account for behavioral states in step-selection analysis: a model comparison

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A Time-Series Model for Underdispersed or Overdispersed Counts

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Modelling multi‐scale, state‐switching functional data with hidden Markov models

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Validating Corruption Risk Measures: A Key Step to Monitoring SDG Progress

Gnaldi, M., & Sarto, S. D. (2023) · Social Indicators Research · doi:10.1007/s11205-023-03238-y · Cited by 17 · see citing works

Towards scalable deployment of Hidden Markov models in occupancy estimation: A novel methodology applied to the study case of occupancy detection

Ali, S., & Bouguila, N. (2021) · Energy and Buildings · doi:10.1016/j.enbuild.2021.111594 · Cited by 17 · see citing works

Occupancy states forecasting with a hidden Markov model for incomplete data, exploiting daily periodicity

Kabbaj, O. A., Péan, L.-M., Masson, J.-B., Marhic, B., & Delahoche, L. (2023) · Energy and Buildings · doi:10.1016/j.enbuild.2023.112985 · Cited by 17 · see citing works

The Conditionally Autoregressive Hidden Markov Model (CarHMM): Inferring Behavioural States from Animal Tracking Data Exhibiting Conditional Autocorrelation

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Movement patterns and activity levels are shaped by the neonatal environment in Antarctic fur seal pups

Nagel, R., Mews, S., Adam, T., Stainfield, C., Fox‐Clarke, C., Toscani, C., Langrock, R., Forcada, J., & Hoffman, J. I. (2021) · Scientific Reports · doi:10.1038/s41598-021-93253-1 · Cited by 16 · see citing works

Behavioural responses of fin whales to military mid-frequency active sonar

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A guide to state–space modeling of ecological time series

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Unsealing behaviour: Variation in harbour seal (Phoca vitulina) responses to anthropogenic sound in relation to individual health

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A framework for integrating inferred movement behavior into disease risk models

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The Effect of Periodic Email Prompts on Participant Engagement With a Behavior Change mHealth App: Longitudinal Study

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Packet Loss Characterization Using Cross Layer Information and HMM for Wi-Fi Networks

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Anomaly Detection in Smart Industrial Machinery Through Hidden Markov Models and Autoencoders

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A probabilistic framework for predicting disease dynamics: A case study of psychotic depression

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Using accelerometry tags to quantify gray whale foraging behavior

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Uncovering hidden patterns of design ideation using hidden Markov modeling and neuroimaging

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Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock

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A Markov-switching generalized additive model for compound Poisson processes, with applications to operational loss models

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State‐space modeling reveals habitat perception of a small terrestrial mammal in a fragmented landscape

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Diving deeper into the underlying white shark behaviors at Guadalupe Island, Mexico

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A gentle tutorial on accelerated parameter and confidence interval estimation for hidden Markov models using Template Model Builder

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Gradient boosting in Markov-switching generalized additive models for location, scale, and shape

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Flexible hidden Markov models for behaviour-dependent habitat selectionPreprint

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Characterising eye movement events with an unsupervised hidden markov model

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Active acoustic telemetry reveals ontogenetic habitat-related variations in the coastal movement ecology of the white shark

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Go Multivariate: Recommendations on Bayesian Multilevel Hidden Markov Models with Categorical Data

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Linear and landscape disturbances alter Mojave desert tortoise movement behavior

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Exploring the effect of the menstrual cycle or oral contraception on elite athletes’ training responses when workload is not objectively quantifiable: the MILS approach and findings from female Olympians

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Using Hidden Markov Models to characterise intermittent social behaviour in fish shoals

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Selecting the Number of States in Hidden Markov Models - Pitfalls, Practical Challenges and Pragmatic SolutionsPreprint

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Improved order selection method for hidden Markov models: A case study with movement data

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Likelihood Ratio Search Procedure for Optimum Number of States in a Hidden Markov Manpower Model

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Selecting the number of states in Hidden Markov models

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