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The nature of the accessible and buried surfaces in proteins
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Citations
Cited by
A Switch Between Two-, Three-, and Four-stranded Coiled Coils in GCN4 Leucine Zipper Mutants
Harbury, P. B., Zhang, T., Kim, P. S., & Alber, T. (1993) · Science · doi:10.1126/science.8248779 · Cited by 1,490
Molecular code for transmembrane-helix recognition by the Sec61 translocon.
Hessa, T., Meindl-Beinker, N. M., Bernsel, A., Kim, H., Sato, Y., Lerch-Bader, M., Nilsson, I., White, S. H., & von Heijne, G. (2007) · Nature · doi:10.1038/nature06387 · Cited by 708
Ma, B., Elkayam, T., Wolfson, H., & Nussinov, R. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1030237100 · Cited by 595
A Buried Polar Interaction Imparts Structural Uniqueness in a Designed Heterodimeric Coiled Coil
Lumb, K. J., & Kim, P. S. (1995) · Biochemistry · doi:10.1021/bi00027a013 · Cited by 266
The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures
van Dijk, E., Hoogeveen, A., & Abeln, S. (2015) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1004277 · Cited by 162
“More specifically, hydrophobicity scales for the different amino acid types may be obtained using physicochemical properties [18], or by calculating how often we find each residue type exposed to the solvent at the surface of a protein [18–21].”
MethodGreen, A. G., Elhabashy, H., Brock, K. P., Maddamsetti, R., Kohlbacher, O., & Marks, D. S. (2021) · Nature Communications · doi:10.1038/s41467-021-21636-z · Cited by 114
Kunik, V., & Ofran, Y. (2013) · Protein Engineering Design and Selection · doi:10.1093/protein/gzt027 · Cited by 96
Estimating the prevalence of protein sequences adopting functional enzyme folds
Axe, D. D. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.06.058 · Cited by 86
Van Domeselaar, G. H., Kwon, G. S., Andrew, L. C., & Wishart, D. S. (2003) · Colloids and Surfaces B: Biointerfaces · doi:10.1016/s0927-7765(03)00125-5 · Cited by 69
Pey, A. L., Padín-Gonzalez, E., Mesa-Torres, N., & Timson, D. J. (2014) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2014.07.030 · Cited by 26
Metadata
- Authors
- Chothia, C.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 1976-07
- Volume
- 105
- Issue
- 1
- Pages
- 1-12
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W1985204165
- Cited by
- 1,161
- References
- 0
- FWCI
- 5.83
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.