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Sequence and spacing requirements of a retrovirus integration site
Open accessAbstract
Following infection, retroviruses insert a DNA copy of their RNA genome into the host cell genome. This integrative recombination reaction occurs at specific sites on the viral DNA: inverted repeat sequences near the termini of the linear DNA form of the viral genome. We have described elsewhere the generation and analysis of deletion mutations at one of the inverted repeat sequences in Moloney murine leukemia virus. We describe here the effects of insertion mutations made at this locus. Our results show that substantial sequence changes at the site of recombination can be tolerated, and that the spacing between the cleavage sites on the viral DNA can be expanded as well as contracted while still allowing efficient viral integration. After several rounds of virus replication, each of the insertion mutants gave rise to pseudorevertants with new alterations at the integration site.
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“Depending upon the retrovirus type, IN acts on ~16–20 terminal nucleotides of the LTR (Colicelli and Goff 1988, Withers-Ward et al. 1994, Masuda et al. 1998, Brown et al. 1999).”
From Beyond reverse transcription: molecular mechanisms and emerging paradigms in retroviral replication (2026) · cites this paper as Colicelli and Goff 1988
In the citing paper
“These cis-acting att sites are present in the form of imperfect inverted repeats and are both necessary and sufficient for integration both in vitro and in vivo (Fig. 7) (Colicelli and Goff 1988, Katzman et al. 1989, Bushman et al. 1990, Murphy et al. 1993, Brown et al. 1999).”
From Beyond reverse transcription: molecular mechanisms and emerging paradigms in retroviral replication (2026) · cites this paper as Colicelli and Goff 1988
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Metadata
- Authors
- Colicelli, J., & Goff, S. P.
- Affiliations
- Columbia University (US)
- ORCID
- Goff, Stephen P.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 1988-01
- Volume
- 199
- Issue
- 1
- Pages
- 47-59
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W2041126567
- Cited by
- 198
- References
- 51
- Citations by year
- 2025: 2 · 2022: 2 · 2021: 1 · 2018: 3 · 2017: 2 · 2015: 2 · 2014: 8 · 2013: 2 · 2012: 7
- FWCI
- 5.37
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Molecular Biology (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (CA 30488)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and Retrovirus Studies
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Keywords
- retroviral integration, Moloney murine leukemia virus, inverted repeats, integration sites, insertion mutation, recombination, pseudorevertants, viral DNA
- MeSH terms
- Base Sequence, DNA, Circular, DNA, Viral, Genes, Viral, Molecular Sequence Data, Mutation, Phenotype, Recombination, Genetic, Retroviridae, Virus Replication
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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