Membrane protein structure prediction

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

Krogh, A., Larsson, B., von Heijne, G., & Sonnhammer, E. L. L. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4315 · Cited by 12,654

Major Facilitator Superfamily

Pao, S. S., Paulsen, I. T., & Saier, M. H. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.1.1-34.1998 · Cited by 2,297

A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila.

Scott, K., Brady, R., Cravchik, A., Morozov, P., Rzhetsky, A., Zuker, C., & Axel, R. (2001) · Cell · doi:10.1016/s0092-8674(01)00263-x · Cited by 720

Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions

Berks, B. C., Ferguson, S. J., Moir, J. W. B., & Richardson, D. J. (1995) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/0005-2728(95)00092-5 · Cited by 596

Structure-based membrane dome mechanism for Piezo mechanosensitivity

Guo, Y. R., & MacKinnon, R. (2017) · eLife · doi:10.7554/elife.33660 · Cited by 446

Signal peptidases.

Paetzel, M., Karla, A., Strynadka, N. C. J., & Dalbey, R. E. (2002) · Chemical Reviews · doi:10.1021/cr010166y · Cited by 440

Structure of the membrane domain of respiratory complex I

Efremov, R. G., & Sazanov, L. A. (2011) · Nature · doi:10.1038/nature10330 · Cited by 370

Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes

Anantharaman, V., & Aravind, L. (2003) · Genome Biology · doi:10.1186/gb-2003-4-2-r11 · Cited by 365

Proteomics of Integral Membrane ProteinsTheory and Application

Speers, A. E., & Wu, C. C. (2007) · Chemical Reviews · doi:10.1021/cr068286z · Cited by 325

The NRAMP proteins of Salmonella typhimurium and Escherichia coli are selective manganese transporters involved in the response to reactive oxygen

Kehres, D. G., Zaharik, M. L., Finlay, B. B., & Maguire, M. E. (2000) · Molecular Microbiology · doi:10.1046/j.1365-2958.2000.01922.x · Cited by 292

Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly

Scott, K. A., Bond, P. J., Ivetac, A., Chetwynd, A. P., Khalid, S., & Sansom, M. S. P. (2008) · Structure · doi:10.1016/j.str.2008.01.014 · Cited by 207

THE F0F1-TYPE ATP SYNTHASES OF BACTERIA: Structure and Function of the F0 Complex

Deckers-Hebestreit, G., & Altendorf, K. (1996) · Annual Review of Microbiology · doi:10.1146/annurev.micro.50.1.791 · Cited by 195

Identification and molecular analysis of a locus that regulates extracellular toxin production in Clostridium perfringens

Lyristis, M., Bryant, A. E., Sloan, J., Awad, M. M., Nisbet, I. T., Stevens, D. L., & Rood, J. I. (1994) · Molecular Microbiology · doi:10.1111/j.1365-2958.1994.tb01063.x · Cited by 165

Cloning and characterization of MgtE, a putative new class of Mg2+ transporter from Bacillus firmus OF4

Smith, R. L., Thompson, L. J., & Maguire, M. E. (1995) · Journal of Bacteriology · doi:10.1128/jb.177.5.1233-1238.1995 · Cited by 127

Aspergillus fumigatus Survival in Alkaline and Extreme Zinc-Limiting Environments Relies on the Induction of a Zinc Homeostasis System Encoded by the zrfC and aspf2 Genes

Amich, J., Vicentefranqueira, R., Leal, F., & Calera, J. A. (2010) · Eukaryotic Cell · doi:10.1128/ec.00348-09 · Cited by 105

Vertebrate Membrane Proteins: Structure, Function, and Insights from Biophysical Approaches

Müller, D. J., Wu, N., & Palczewski, K. (2008) · Pharmacological Reviews · doi:10.1124/pr.107.07111 · Cited by 104

Topological analysis of the peripheral benzodiazepine receptor in yeast mitochondrial membranes supports a five-transmembrane structure

Joseph-Liauzun, E., Delmas, P., Shire, D., & Ferrara, P. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.4.2146 · Cited by 102

Membrane Topology of the 60-kDa Oxa1p Homologue fromEscherichia coli

Sääf, A., Monné, M., de Gier, J.-W., & von Heijne, G. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.46.30415 · Cited by 89

Expression of Escherichia coli TehA gives resistance to antiseptics and disinfectants similar to that conferred by multidrug resistance efflux pumps

Turner, R. J., Taylor, D. E., & Weiner, J. H. (1997) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.41.2.440 · Cited by 62

Periplasmic nitrate-reducing system of the phototrophic bacterium Rhodobacter sphaeroides DSM 158: transcriptional and mutational analysis of the napKEFDABC gene cluster

REYES, F., GAVIRA, M., CASTILLO, F., & MORENO-VIVIÁN, C. (1998) · Biochemical Journal · doi:10.1042/bj3310897 · Cited by 56

Signals for protein targeting into and across membranes.

von Heijne, G. (1994) · Subcellular Biochemistry · doi:10.1007/978-1-4615-2401-4_1 · Cited by 40

SecA drives transmembrane insertion of RodZ, an unusual single-span membrane protein.

Rawat, S., Zhu, L., Lindner, E., Dalbey, R. E., & White, S. H. (2015) · Journal of Molecular Biology · doi:10.1016/j.jmb.2014.05.005 · Cited by 34

The hemX gene of the Bacillus subtilis hemAXCDBL operon encodes a membrane protein, negatively affecting the steady-state cellular concentration of HemA (glutamyl-tRNA reductase)

Schroder, I., Johansson, P., Rutberg, L., & Hederstedt, L. (1994) · Microbiology · doi:10.1099/00221287-140-4-731 · Cited by 26

Constitutive activation and oncogenicity are mediated by loss of helical structure at the cytosolic boundary of thrombopoietin receptor mutant dimers

Defour, J.-P., Leroy, E., Dass, S., Balligand, T., Levy, G., Brett, I. C., Papadopoulos, N., Mouton, C., Genet, L., Pecquet, C., et al. (2023) · eLife · doi:10.7554/elife.81521 · Cited by 10

mPPases create a conserved anionic membrane fingerprint as identified via multi-scale simulations

Holmes, A. O. M., Goldman, A., & Kalli, A. C. (2022) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1010578 · Cited by 3