Intellectual disability is associated with increased runs of homozygosity in simplex autism
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Intellectual disability (ID), often attributed to autosomal-recessive mutations, occurs in 40% of autism spectrum disorders (ASDs). For this reason, we conducted a genome-wide analysis of runs of homozygosity (ROH) in simplex ASD-affected families consisting of a proband diagnosed with ASD and at least one unaffected sibling. In these families, probands with an IQ ≤ 70 show more ROH than their unaffected siblings, whereas probands with an IQ > 70 do not show this excess. Although ASD is far more common in males than in females, the proportion of females increases with decreasing IQ. Our data do support an association between ROH burden and autism diagnosis in girls; however, we are not able to show that this effect is independent of low IQ. We have also discovered several autism candidate genes on the basis of finding (1) a single gene that is within an ROH interval and that is recurrent in autism or (2) a gene that is within an autism ROH block and that harbors a homozygous, rare deleterious variant upon analysis of exome-sequencing data. In summary, our data suggest a distinct genetic architecture for participants with autism and co-occurring intellectual disability and that this architecture could involve a role for recessively inherited loci for this autism subgroup.
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Recessive variants account for a small fraction of idiopathic ASD and developmental delay.
“Recessive variants account for a small fraction of idiopathic ASD (Gamsiz et al., 2013) and developmental delay, but they account for a larger proportion (up to 30%) of cases in consanguineous families (Martin et al., 2018).”
From Getting to the cores of autism (2019) · cites this paper as Gamsiz et al., 2013
Cites
PLINK: a tool set for whole-genome association and population-based linkage analyses.
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089 · see citing works
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
O’Roak, B. J., Vives, L., Girirajan, S., Karakoc, E., Krumm, N., Coe, B. P., Levy, R., Ko, A., Lee, C., Smith, J. D., et al. (2012) · Nature · doi:10.1038/nature10989 · Cited by 2,165 · cited 1× · see citing works
“Further, we investigated whether there are homozygous, rare deleterious coding variants in any of the genes within intervals in which ROH was more common in affected probands than in their control siblings (Table S4) by using available exome-sequencing data for the SSC data set.(18,19,20) Although sequence data were o…”
MethodDe novo mutations revealed by whole-exome sequencing are strongly associated with autism
Sanders, S. J., Murtha, M. T., Gupta, A. R., Murdoch, J. D., Raubeson, M. J., Willsey, A. J., Ercan-Sencicek, A. G., DiLullo, N. M., Parikshak, N. N., Stein, J. L., et al. (2012) · Nature · doi:10.1038/nature10945 · Cited by 2,084 · see citing works
Self-citationEpidemiology of Pervasive Developmental Disorders
Fombonne, E. (2009) · Pediatric Research · doi:10.1203/pdr.0b013e31819e7203 · Cited by 1,971 · see citing works
Genetic Mapping in Human Disease
Altshuler, D., Daly, M. J., & Lander, E. S. (2008) · Science · doi:10.1126/science.1156409 · Cited by 1,452 · see citing works
De Novo Gene Disruptions in Children on the Autistic Spectrum
Iossifov, I., Ronemus, M., Levy, D., Wang, Z., Hakker, I., Rosenbaum, J., Yamrom, B., Lee, Y.-H., Narzisi, G., Leotta, A., et al. (2012) · Neuron · doi:10.1016/j.neuron.2012.04.009 · Cited by 1,446 · see citing works
Sanders, S. J., Ercan-Sencicek, A. G., Hus, V., Luo, R., Murtha, M. T., Moreno-De-Luca, D., Chu, S. H., Moreau, M. P., Gupta, A. R., Thomson, S. A., et al. (2011) · Neuron · doi:10.1016/j.neuron.2011.05.002 · Cited by 1,263 · see citing works
Self-citationIdentifying autism loci and genes by tracing recent shared ancestry
Morrow, E. M., Yoo, S.-Y., Flavell, S. W., Kim, T.-K., Lin, Y., Hill, R. S., Mukaddes, N. M., Balkhy, S., Gascon, G., Hashmi, A., et al. (2008) · Science · doi:10.1126/science.1157657 · Cited by 737 · see citing works
Self-citationThe Simons Simplex Collection: a resource for identification of autism genetic risk factors
Fischbach, G. D., & Lord, C. (2010) · Neuron · doi:10.1016/j.neuron.2010.10.006 · Cited by 725 · see citing works
Amiet, C., Gourfinkel-An, I., Bouzamondo, A., Tordjman, S., Baulac, M., Lechat, P., Mottron, L., & Cohen, D. (2008) · Biological Psychiatry · doi:10.1016/j.biopsych.2008.04.030 · Cited by 499 · see citing works
Detection of sharing by descent, long-range phasing and haplotype imputation
Kong, A., Masson, G., Frigge, M. L., Gylfason, A., Zusmanovich, P., Thorleifsson, G., Olason, P. I., Ingason, A., Steinberg, S., Rafnar, T., et al. (2008) · Nature Genetics · doi:10.1038/ng.216 · Cited by 447 · cited 2× · see citing works
“The methods of Kong et al.(21) estimate that a block of homozygosity that is 2,500 kb dates to a common ancestor approximately 40 generations back in the pedigree, or approximately 1,000 years ago (Figure S8A).”
MethodMutations in <i>BCKD-kinase</i> Lead to a Potentially Treatable Form of Autism with Epilepsy
Novarino, G., El-Fishawy, P., Kayserili, H., Meguid, N. A., Scott, E. M., Schroth, J., Silhavy, J. L., Kara, M., Khalil, R. O., Ben-Omran, T., et al. (2012) · Science · doi:10.1126/science.1224631 · Cited by 320 · see citing works
Self-citationCasey, J. P., Magalhaes, T., Conroy, J. M., Regan, R., Shah, N., Anney, R., Shields, D. C., Abrahams, B. S., Almeida, J., Bacchelli, E., et al. (2012) · Human Genetics · doi:10.1007/s00439-011-1094-6 · Cited by 200 · see citing works
Self-citationGenetics of intellectual disability
Ropers, H. H. (2008) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2008.07.008 · Cited by 199 · see citing works
Yu, T. W., Lim, E. T., Stevens, C. R., Gabriel, S., Chahrour, M. H., Ataman, B., Coulter, M. E., Hill, R. S., Schubert, C. R., Greenberg, M. E., et al. (2012) · Digital Access to Scholarship at Harvard (DASH) (Harvard University) · Cited by 179 · see citing works
Mochida, G. H., Mahajnah, M. M., Hill, A. D., Basel‐Vanagaite, L., Gleason, D., Hill, R. S., Bodell, A., Crosier, M., Straussberg, R., & Walsh, C. A. (2009) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2009.10.027 · Cited by 141 · see citing works
Mir, A., Kaufman, L., Noor, A., Motazacker, M. M., Jamil, T., Azam, M., Kahrizi, K., Rafiq, M., Weksberg, R., Nasr, T., et al. (2009) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2009.11.009 · Cited by 128 · see citing works
Chahrour, M. H., Yu, T. W., Lim, E. T., Ataman, B., Coulter, M. E., Hill, R. S., Stevens, C. R., Schubert, C. R., ARRA Autism Sequencing Collaboration, Greenberg, M. E., et al. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002635 · Cited by 125 · see citing works
Genomic Copy Number Variation in Disorders of Cognitive Development
Morrow, E. M. (2010) · Journal of the American Academy of Child & Adolescent Psychiatry · doi:10.1016/j.jaac.2010.08.009 · Cited by 120 · see citing works
Self-citationPhilippe, O., Rio, M., Carioux, A., Plaza, J.-M., Guigue, P., Molinari, F., Boddaert, N., Bôle‐Feysot, C., Nitschké, P., Smahi, A., et al. (2009) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2009.11.007 · Cited by 97 · see citing works
Genomic Copy Number Variation in Disorders of Cognitive Development
Morrow, E. M. (2010) · Journal of the American Academy of Child & Adolescent Psychiatry · doi:10.1097/00004583-201011000-00003 · Cited by 63 · see citing works
Self-citationGenetics of autosomal recessive non‐syndromic mental retardation: recent advances
Basel‐Vanagaite, L. (2007) · Clinical Genetics · doi:10.1111/j.1399-0004.2007.00881.x · Cited by 30 · see citing works
Wang, L., Hranilović, D., Wang, K., Lindquist, I. E., Yurcaba, L., Petković, Z. B., Gidaya, N. B., Jernej, B., Hakonarson, H. H., & Bućan, M. (2010) · BMC Medical Genetics · doi:10.1186/1471-2350-11-134 · Cited by 24 · see citing works
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Ceballos, F. C., Joshi, P. K., Clark, D. W., Ramsay, M., & Wilson, J. F. (2018) · Nature Reviews Genetics · doi:10.1038/nrg.2017.109 · Cited by 1,006 · see citing works
Getting to the cores of autism
Iakoucheva, L. M., Muotri, A. R., & Sebat, J. (2019) · Cell · doi:10.1016/j.cell.2019.07.037 · Cited by 260 · see citing works
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Hill, W. D., Arslan, R. C., Xia, C., Luciano, M., Amador, C., Navarro, P., Hayward, C., Nagy, R., Porteous, D. J., McIntosh, A. M., et al. (2018) · Molecular Psychiatry · doi:10.1038/s41380-017-0005-1 · Cited by 158 · see citing works
Harrison, A. J., Gamsiz, E. D., Berkowitz, I. C., Nagpal, S., & Jerskey, B. A. (2015) · American Journal of Medical Genetics Part B: Neuropsychiatric Genetics · doi:10.1002/ajmg.b.32377 · Cited by 26 · see citing works
Self-citation
- Authors
- Gamsiz, E. D., Viscidi, E. W., Frederick, A. M., Nagpal, S., Sanders, S. J., Murtha, M. T., Schmidt, M., Triche, E. W., Geschwind, D. H., State, M. W., Istrail, S., Cook, E. H., Devlin, B., & Morrow, E. M.
- Affiliations
- Brown University (US)
- Yale University (US)
- University of California, Los Angeles (US)
- University of Illinois Chicago (US)
- University of Pittsburgh (US)
- Corresponding author
- Morrow, Eric M.
- ORCID
- Venue
- The American Journal of Human Genetics
- Publisher
- Elsevier BV
- Published
- 2013-07
- Volume
- 93
- Issue
- 1
- Pages
- 103-109
- ISSN
- 0002-9297 (ISSN-L)
- PMC
- PMC3710760
- OpenAlex
- W1973211018
- Cited by
- 79
- References
- 25
- Citations by year
- 2026: 1 · 2025: 1 · 2024: 13 · 2023: 4 · 2022: 6 · 2020: 3 · 2019: 7 · 2018: 10 · 2017: 6 · 2016: 8 · 2015: 10 · 2014: 9 · 2013: 1
- FWCI
- 5.12
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- The American Journal of Human Genetics (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Institute of Mental Health (K23MH080954)
- National Institute of General Medical Sciences (P30GM103410, T32GM007601)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (P50HD055782)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Autism Spectrum Disorder Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
- Keywords
- intellectual disability, autism spectrum disorder, runs of homozygosity, recessive inheritance, autism candidate genes, sex differences in autism, genetic architecture
- MeSH terms
- Child, Child Development Disorders, Pervasive, Chromosomes, Human, Female, Genetics, Population, Homozygote, Humans, Intelligence Tests, Male, Intellectual Disability, Pedigree, Phenotype, Sex Factors, Genetic Predisposition to Disease, Genetic Diseases, Inborn, Genetic Association Studies
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