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Proteomics analysis of lipid droplets indicates involvement of membrane trafficking proteins in lipid droplet breakdown in the oleaginous diatom Fistulifera solaris
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Nonoyama et al. reported the detection of membrane trafficking-related proteins from the proteome involved in TAG hydrolysis in oleaginous diatoms.
“Nonoyama et al. [237] reported the detection of membrane trafficking-related proteins from the proteome involved in TAG hydrolysis in oleaginous diatoms.”
From Microalgae biofuels: illuminating the path to a sustainable future amidst challenges and opportunities (2024) · cites this paper as Nonoyama et al. [237]
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Hsp70 stabilizes lysosomes and reverts Niemann–Pick disease-associated lysosomal pathology
Kirkegaard, T., Roth, A. G., Petersen, N. H. T., Mahalka, A. K., Olsen, O. D., Moilanen, I., Zylicz, A., Knudsen, J., Sandhoff, K., Arenz, C., et al. (2010) · Nature · doi:10.1038/nature08710 · Cited by 519
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Research works printed but not linked: 76
- Murphy, 2001, The biogenesis and functions of lipid bodies in animals, plants and microorganisms, Prog. Lipid Res., 40, 325, 10.1016/S0163-7827(01)00013-3 · DOI
- Davidi, 2012, Characterization of major lipid droplet proteins from Dunaliella, Planta, 236, 19, 10.1007/s00425-011-1585-7 · DOI
- Lin, 2002, Steroleosin, a sterol-binding dehydrogenase in seed oil bodies, Plant Physiol., 128, 1200, 10.1104/pp.010982 · DOI
- Moellering, 2010, RNA interference silencing of a major lipid droplet protein affects lipid droplet size in Chlamydomonas reinhardtii, Eukaryot. Cell, 9, 97, 10.1128/EC.00203-09 · DOI
- Nojima, 2013, Proteomics analysis of oil body-associated proteins in the oleaginous diatom, J. Proteome Res., 12, 5293, 10.1021/pr4004085 · DOI
- Peled, 2011, Isolation of a novel oil globule protein from the green alga Haematococcus pluvialis (Chlorophyceae), Lipids, 46, 851, 10.1007/s11745-011-3579-4 · DOI
- Shi, 2015, Proteomic analysis of lipid body from the alkenone-producing marine haptophyte alga Tisochrysis lutea, Proteomics, 15, 4145, 10.1002/pmic.201500010 · DOI
- Tsai, 2015, Dynamics of protein and polar lipid recruitment during lipid droplet assembly in Chlamydomonas reinhardtii, Plant J., 83, 650, 10.1111/tpj.12917 · DOI
- Vieler, 2012, A lipid droplet protein of Nannochloropsis with functions partially analogous to plant oleosins, Plant Physiol., 158, 1562, 10.1104/pp.111.193029 · DOI
- Yoneda, 2016, Identification of a major lipid droplet protein in a marine diatom Phaeodactylum tricornutum, Plant Cell Physiol, 57, 397, 10.1093/pcp/pcv204 · DOI
- Nojima, 2017, Lipid droplet-associated proteins in diverse microalgae revealed by proteomic analysis, Perspect Phycol, 4, 25
- Sato, 2014, Seasonal variation of biomass and oil production of the oleaginous diatom Fistulifera sp. in outdoor vertical bubble column and raceway-type bioreactors, J. Biosci. Bioeng., 117, 720, 10.1016/j.jbiosc.2013.11.017 · DOI
- Matsumoto, 2017, Outdoor cultivation of marine diatoms for year-round production of biofuels, Mar Drugs, 15, 10.3390/md15040094 · DOI
- Tanaka, 2015, Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed by the genome and transcriptome, Plant Cell, 27, 162, 10.1105/tpc.114.135194 · DOI
- Muto, 2013, Establishment of a genetic transformation system for the marine pennate diatom Fistulifera sp. strain JPCC DA0580–a high triglyceride producer, Mar. Biotechnol., 15, 48, 10.1007/s10126-012-9457-0 · DOI
- Muto, 2015, Enhancement of glycerol metabolism in the oleaginous marine diatom Fistulifera solaris JPCC DA0580 to improve triacylglycerol productivity, Biotechnol Biofuels, 8, 4, 10.1186/s13068-014-0184-9 · DOI
- Maeda, 2016, Peptide-mediated microalgae harvesting method for efficient biofuel production, Biotechnol Biofuels, 9, 10, 10.1186/s13068-015-0406-9 · DOI
- Osada, 2017, Enhanced NADPH production in the pentose phosphate pathway accelerates lipid accumulation in the oleaginous diatom Fistulifera solaris, Algal Res., 23, 126, 10.1016/j.algal.2017.01.015 · DOI
- Guillard, 1962, Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt, and Detonula confervacea (cleve) Gran, Can. J. Microbiol., 8, 229, 10.1139/m62-029 · DOI
- Tzen, 1993, Lipids, proteins, and structure of seed oil bodies from diverse species, Plant Physiol., 101, 267, 10.1104/pp.101.1.267 · DOI
- Jeffrey, 1975, New spectrophotometric equations for determining chlorophylls a, b, c1 and c2 in higher plants, algae and natural phytoplankton, Biochem. Physiol. Pflanz., 167, 191, 10.1016/S0015-3796(17)30778-3 · DOI
- Shevchenko, 1996, Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels, Anal. Chem., 68, 850, 10.1021/ac950914h · DOI
- Sunaga, 2015, Chloroplast-targeting protein expression in the oleaginous diatom Fistulifera solaris JPCC DA0580 toward metabolic engineering, J. Biosci. Bioeng., 119, 28, 10.1016/j.jbiosc.2014.06.008 · DOI
- Liang, 2015, Dynamic oil body generation in the marine oleaginous diatom Fistulifera solaris in response to nutrient limitation as revealed by morphological and lipidomic analysis, Algal Res., 12, 359, 10.1016/j.algal.2015.09.017 · DOI
- Nguyen, 2011, Proteomic profiling of oil bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: with focus on proteins involved in lipid metabolism, Proteomics, 11, 4266, 10.1002/pmic.201100114 · DOI
- Davidi, 2015, Proteome analysis of cytoplasmatic and plastidic β-carotene lipid droplets in Dunaliella bardawil, Plant Physiol., 167, 60, 10.1104/pp.114.248450 · DOI
- Rong, 2012, Clathrin and phosphatidylinositol-4,5-bisphosphate regulate autophagic lysosome reformation, Nat. Cell Biol., 14, 924, 10.1038/ncb2557 · DOI · Paper page
- Barouch, 1994, ATPase activity associated with the uncoating of clathrin baskets by Hsp70, J. Biol. Chem., 269, 28563, 10.1016/S0021-9258(19)61942-3 · DOI
- Nomaguchi, 2018, Comprehensive analysis of triacylglycerol lipases in the oleaginous diatom Fistulifera solaris JPCC DA0580 with transcriptomics under lipid degradation, J. Biosci. Bioeng., 126, 258, 10.1016/j.jbiosc.2018.03.003 · DOI
- Valenzuela, 2013, Nutrient resupplementation arrests bio-oil accumulation in Phaeodactylum tricornutum, Appl. Microbiol. Biotechnol., 97, 7049, 10.1007/s00253-013-5010-y · DOI
- Zeeh, 2006, Dual specificity of the interfacial inhibitor brefeldin a for arf proteins and sec7 domains, J. Biol. Chem., 281, 11805, 10.1074/jbc.M600149200 · DOI
- Lay, 2005, Binding and functions of ADP-ribosylation factor on mammalian and yeast peroxisomes, J. Biol. Chem., 280, 34489, 10.1074/jbc.M503497200 · DOI
- McCartney, 2005, Localization of the tomato bushy stunt virus replication protein p33 reveals a peroxisome-to-endoplasmic reticulum sorting pathway, Plant Cell, 17, 3513, 10.1105/tpc.105.036350 · DOI
- Kato, 2013, Triacylglycerol mobilization is suppressed by brefeldin A in Chlamydomonas reinhardtii, Plant Cell Physiol, 54, 1585, 10.1093/pcp/pct103 · DOI
- Lupette, 2019, The architecture of lipid droplets in the diatom Phaeodactylum tricornutum, Algal Res., 38, 10.1016/j.algal.2019.101415 · DOI
- Maeda, 2014, Oleosome-associated protein of the oleaginous diatom Fistulifera solaris contains an endoplasmic reticulum-targeting signal sequence, Mar Drugs, 12, 3892, 10.3390/md12073892 · DOI
- Flori, 2017, Plastid thylakoid architecture optimizes photosynthesis in diatoms, Nat. Commun., 8, 10.1038/ncomms15885 · DOI
- Bailleul, 2015, Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms, Nature, 524, 366, 10.1038/nature14599 · DOI
- Yoneda, 2018, Homologous expression of lipid droplet protein-enhanced neutral lipid accumulation in the marine diatom Phaeodactylum tricornutum, J. Appl. Phycol., 30, 2793, 10.1007/s10811-018-1402-9 · DOI
- Siloto, 2006, The accumulation of oleosins determines the size of seed oil bodies in Arabidopsis, Plant Cell, 18, 1961, 10.1105/tpc.106.041269 · DOI
- Maeda, 2017, Structure and properties of oil bodies in diatoms, Philos. Trans. R. Soc. Lond. Ser. B Biol. Sci., 372
- Ross, 1993, Differential presence of oleosins in oleogenic seed and mesocarp tissues in olive (Olea europaea) and avocado (Persea americana), Plant Sci., 93, 203, 10.1016/0168-9452(93)90050-A · DOI
- Siegler, 2017, Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa, BMC Plant Biol., 17, 98, 10.1186/s12870-017-1042-2 · DOI
- Goloubinoff, 2017, Editorial: the HSP70 molecular chaperone machines, Front. Mol. Biosci., 4, 1, 10.3389/fmolb.2017.00001 · DOI
- Calamini, 2012, Protein homeostasis as a therapeutic target for diseases of protein conformation, Curr. Top. Med. Chem., 12, 2623, 10.2174/1568026611212220014 · DOI
- Finka, 2016, Experimental milestones in the discovery of molecular chaperones as polypeptide unfolding enzymes, Annu. Rev. Biochem., 85, 715, 10.1146/annurev-biochem-060815-014124 · DOI
- Sousa, 2006, Keep the traffic moving: mechanism of the Hsp70 motor, Traffic, 7, 1596, 10.1111/j.1600-0854.2006.00497.x · DOI
- Fotin, 2004, Structure of an auxilin-bound clathrin coat and its implications for the mechanism of uncoating, Nature, 432, 649, 10.1038/nature03078 · DOI
- Cuervo, 2014, Chaperone-mediated autophagy: roles in disease and aging, Cell Res., 24, 92, 10.1038/cr.2013.153 · DOI
- Kaushik, 2015, Degradation of lipid droplet-associated proteins by chaperone-mediated autophagy facilitates lipolysis, Nat. Cell Biol., 17, 759, 10.1038/ncb3166 · DOI
- Rodriguez, 2008, Molecular basis for regulation of the heat shock transcription factor sigma32 by the DnaK and DnaJ chaperones, Mol. Cell, 32, 347, 10.1016/j.molcel.2008.09.016 · DOI
- VanPelt, 2017, Unraveling the CHIP:Hsp70 complex as an information processor for protein quality control, Biochim. Biophys. Acta, 1865, 133, 10.1016/j.bbapap.2016.11.005 · DOI
- Rapoport, 2008, A motif in the clathrin heavy chain required for the Hsc70/auxilin uncoating reaction, Mol. Biol. Cell, 19, 405, 10.1091/mbc.e07-09-0870 · DOI
- Michaeli, 2016, Autophagy in plants–what's new on the menu?, Trends Plant Sci., 21, 134, 10.1016/j.tplants.2015.10.008 · DOI
- van Zutphen, 2014, Lipid droplet autophagy in the yeast Saccharomyces cerevisiae, Mol. Biol. Cell, 25, 290, 10.1091/mbc.e13-08-0448 · DOI
- Vrieling, 2002, Immunocytochemical evidence for acidic thylakoids in intact diatom cells, Phycologia, 41, 636, 10.2216/i0031-8884-41-6-636.1 · DOI
- Schreiber, 2017, The central vacuole of the diatom Phaeodactylum tricornutum: identification of new vacuolar membrane proteins and of a functional di-leucine-based targeting motif, Protist, 168, 271, 10.1016/j.protis.2017.03.001 · DOI
- Liu, 2016, Addressing various compartments of the diatom model organism Phaeodactylum tricornutum via sub-cellular marker proteins, Algal Res., 20, 249, 10.1016/j.algal.2016.10.018 · DOI
- Takei, 2001, Clathrin-mediated endocytosis: membrane factors pull the trigger, Trends Cell Biol., 11, 385, 10.1016/S0962-8924(01)02082-7 · DOI · Paper page
- Costaguta, 2001, Yeast Gga coat proteins function with clathrin in Golgi to endosome transport, Mol. Biol. Cell, 12, 1885, 10.1091/mbc.12.6.1885 · DOI
- Singh, 2009, Autophagy regulates lipid metabolism, Nature, 458, 1131, 10.1038/nature07976 · DOI · Paper page
- Kim, 2013, Rapid induction of lipid droplets in Chlamydomonas reinhardtii and Chlorella vulgaris by brefeldin A, PLoS One, 8, 10.1371/journal.pone.0081978 · DOI
- Guo, 2008, Functional genomic screen reveals genes involved in lipid-droplet formation and utilization, Nature, 453, 657, 10.1038/nature06928 · DOI
- Schwarz, 2017, Carbon starvation induces lipid degradation via autophagy in the model alga Micrasterias, J. Plant Physiol., 208, 115, 10.1016/j.jplph.2016.11.008 · DOI
- Zhao, 2014, Autophagy-like processes are involved in lipid droplet degradation in Auxenochlorella protothecoides during the heterotrophy-autotrophy transition, Front. Plant Sci., 5, 400, 10.3389/fpls.2014.00400 · DOI
- Kajikawa, 2019, Isolation and characterization of Chlamydomonas autophagy-related mutants in nutrient-deficient conditions, Plant Cell Physiol, 60, 126, 10.1093/pcp/pcy193 · DOI
- von Kleist, 2011, Role of the clathrin terminal domain in regulating coated pit dynamics revealed by small molecule inhibition, Cell, 146, 471, 10.1016/j.cell.2011.06.025 · DOI
- Williamson, 2009, Novel adenosine-derived inhibitors of 70kDa heat shock protein, discovered through structure-based design, J. Med. Chem., 52, 1510, 10.1021/jm801627a · DOI
- Kawai, 2007, Autophagosome-lysosome fusion depends on the pH in acidic compartments in CHO cells, Autophagy, 3, 154, 10.4161/auto.3634 · DOI
- Ohkuma, 1978, Fluorescence probe measurement of the intralysosomal pH in living cells and the perturbation of pH by various agents, Proc. Natl. Acad. Sci. U. S. A., 75, 3327, 10.1073/pnas.75.7.3327 · DOI
- Bouchez, 2015, Regulation of lipid droplet dynamics in Saccharomyces cerevisiae depends on the Rab7-like Ypt7p, HOPS complex and V1-ATPase, Biol Open, 4, 764, 10.1242/bio.20148615 · DOI
- Hyttinen, 2013, Maturation of autophagosomes and endosomes: a key role for Rab7, Biochim. Biophys. Acta, 1833, 503, 10.1016/j.bbamcr.2012.11.018 · DOI
- Schroeder, 2015, The small GTPase Rab7 as a central regulator of hepatocellular lipophagy, Hepatology, 61, 1896, 10.1002/hep.27667 · DOI
- Massey, 2010, A novel, small molecule inhibitor of Hsc70/Hsp70 potentiates Hsp90 inhibitor induced apoptosis in HCT116 colon carcinoma cells, Can Chemother Pharmacol, 66, 535, 10.1007/s00280-009-1194-3 · DOI
- Barka, 2016, Identification of a triacylglycerol lipase in the diatom Phaeodactylum tricornutum, Biochim. Biophys. Acta, 1861, 239, 10.1016/j.bbalip.2015.12.023 · DOI
- Trentacoste, 2013, Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth, Proc. Natl. Acad. Sci. U. S. A., 110, 19748, 10.1073/pnas.1309299110 · DOI
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Wang, M., Ye, X., Bi, H., & Shen, Z. (2024) · Biotechnology for Biofuels and Bioproducts · doi:10.1186/s13068-024-02461-0 · Cited by 201
Metadata
- Authors
- Nonoyama, T., Nojima, D., Maeda, Y., Noda, M., Yoshino, T., Matsumoto, M., Bowler, C., & Tanaka, T.
- Affiliations
- Tokyo University of Agriculture and Technology (JP)
- J-Power (Japan) (JP)
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Tanaka, Tsuyoshi
- Venue
- Algal Research
- Publisher
- Elsevier BV
- Published
- 2019-12
- Volume
- 44
- Pages
- 101660
- ISSN
- 2211-9264 (ISSN-L)
- OpenAlex
- W2982499731
- Cited by
- 29
- References
- 1
- Citations by year
- 2026: 3 · 2025: 3 · 2024: 4 · 2023: 5 · 2022: 6 · 2021: 3 · 2020: 5
- FWCI
- 1.47
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Algal Research (acceptedVersion)
- Funders
- Japan Science and Technology Agency
- Core Research for Evolutional Science and Technology (09154495)
- Japan Society for the Promotion of Science (17H03465)
- European Research Council (294823, ANR–12–BIME–0005)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Algal biology and biofuel production
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Autophagy in Disease and Therapy
- Keywords
- lipid droplets, lipophagy, lipolysis, vesicle coat proteins, heat shock proteins, autophagy, lipid droplet proteins, Fistulifera solaris, Phaeodactylum tricornutum, lipid metabolism, microalgal oil production, biofuels
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