Simultaneously Measuring Carbon Uptake Capacity and Chlorophyll a Fluorescence Dynamics in Algae
Open accessAbstract
Measurements of cellular carbon assimilation and chlorophyll a fluorescence are key tools for assessing the physiological capacity of algae and cyanobacteria. The uptake of CO2 from the immediate environment informs a researcher about photosynthetic rates. Chlorophyll a fluorescence dynamics can be used to infer efficiencies about light energy harvesting efficiencies and loss processes such as the loss of energy as heat through non-photochemical quenching. Here we report the utilization of novel instrument that continuously measures CO2 exchange from an aqueous solution to suspended cells synchronously with chlorophyll fluorescence. We apply the instrument to investigate the response of photosynthesis to increasing light in 3 different productive strains of eukaryotic microalgae. We found that the carbon assimilation rates of Scenedesmus obliquus (UTEX393) did not saturate, even in light fluxes approximating full sunlight. Monoraphidium sp. (26BAM) had a high nonphotochemical quenching capacity in excess light. Both of these strains, and a third, Scendesmus actus (LRBOY07), demonstrated remarkably linear relationships between carbon assimilation rates and relative electron transport estimates at lower light intensities. This work shows the utility of novel instrumentation to quickly assay the photosynthetic capabilities of microalgal strains.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The LI-COR LI-6800 combines measurement of gas exchange with chlorophyll fluorescence analysis, enabling simultaneous monitoring of CO2 uptake, oxygen production, and photosynthetic efficiency of microalgae.
“For more advanced applications, the LI-COR LI-6800 Portable Photosynthesis System (Lincoln, NB, USA) combines the measurement of gas exchange with chlorophyll fluorescence analysis, enabling the simultaneous monitoring of CO2 uptake, oxygen production, and photosynthetic efficiency of microalgae [215].”
From Multi-Sensing Monitoring of the Microalgae Biomass Cultivation Systems for Biofuels and Added Value Products Synthesis—Challenges and Opportunities (2025) · cites this paper as [215]
The Measurement system description (§2.2.2) says the LI-6800 with an aquatic chamber simultaneously measures CO2 exchange and chlorophyll fluorescence in liquid samples. The Introduction says fluorescence can indicate aspects of photosynthetic efficiency, but describes oxygen-production measurements as using other methods; this paper does not support the claim that the LI-6800 simultaneously monitors oxygen production. (LLM, conf=0.90)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Chlorophyll fluorescence—a practical guide
Maxwell, K., & Johnson, G. N. (2000) · Journal of Experimental Botany · doi:10.1093/jexbot/51.345.659 · Cited by 9,347 · see citing works
Primary production of the biosphere: Integrating terrestrial and oceanic components
Field, C. B., Behrenfeld, M. J., Randerson, J. T., & Falkowski, P. (1998) · Science · doi:10.1126/science.281.5374.237 · Cited by 6,371 · see citing works
Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications
Murchie, E. H., & Lawson, T. (2013) · Journal of Experimental Botany · doi:10.1093/jxb/ert208 · Cited by 2,210 · see citing works
New Fluorescence Parameters for the Determination of QA Redox State and Excitation Energy Fluxes
Kramer, D., Johnson, G. N., Kiirats, O., & Edwards, G. E. (2004) · Photosynthesis Research · doi:10.1023/b:pres.0000015391.99477.0d · Cited by 1,798 · see citing works
Rapid light curves: A powerful tool to assess photosynthetic activity
Ralph, P. J., & Gademann, R. (2005) · Aquatic Botany · doi:10.1016/j.aquabot.2005.02.006 · Cited by 1,204 · see citing works
Ruban, A. V. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.15.01935 · Cited by 1,025 · see citing works
Oxborough, K., & Baker, N. R. (1997) · Photosynthesis Research · doi:10.1023/a:1005936823310 · Cited by 879 · see citing works
MacIntyre, H. L., Kana, T. M., Anning, T., & Geider, R. J. (2002) · Journal of Phycology · doi:10.1046/j.1529-8817.2002.00094.x · Cited by 832 · see citing works
Ritchie, R. J. (2008) · Photosynthetica · doi:10.1007/s11099-008-0019-7 · Cited by 684 · see citing works
(2013) · doi:10.1007/978-94-007-5479-9 · Cited by 670 · see citing works
Niyogi, K., & Truong, T. B. (2013) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2013.03.011 · Cited by 501 · see citing works
Kolber, Z., Zehr, J. P., & Falkowski, P. G. (1988) · PLANT PHYSIOLOGY · doi:10.1104/pp.88.3.923 · Cited by 493 · see citing works
Photosynthesis: basics, history and modelling
Stirbet, A. D., Lazár, D., Guo, Y., & Govindjee, G. (2019) · Annals of Botany · doi:10.1093/aob/mcz171 · Cited by 382 · see citing works
Standard Methods for Measuring Growth of Algae and Their Composition
Moheimani, N. R., Borowitzka, M. A., Isdepsky, A., & Fon-Sing, S. (2012) · Springer eBooks · doi:10.1007/978-94-007-5479-9_16 · Cited by 255 · see citing works
Beckmann, J., Lehr, F., Finazzi, G., Hankamer, B. D., Posten, C. H., Wobbe, L., & Kruse, O. (2009) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2009.02.015 · Cited by 212 · see citing works
Maxwell, D. P., Falk, S., & Huner, N. (1995) · PLANT PHYSIOLOGY · doi:10.1104/pp.107.3.687 · Cited by 197 · see citing works
Negi, S., Barry, A. N., Friedland, N., Sudasinghe, N., Subramanian, S., Pieris, S., Holguin, F. O., Dungan, B., Schaub, T., & Sayre, R. (2016) · Journal of Applied Phycology · doi:10.1007/s10811-015-0652-z · Cited by 156 · see citing works
Edmundson, S. J., & Huesemann, M. H. (2015) · Algal Research · doi:10.1016/j.algal.2015.10.012 · Cited by 149 · see citing works
Flavodiiron Proteins Promote Fast and Transient O2 Photoreduction in Chlamydomonas
Chaux, F., Burlacot, A., Mekhalfi, M., Auroy, P., Blangy, S., Richaud, P., & Peltier, G. (2017) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.00421 · Cited by 148 · see citing works
Wohlfahrt, G., & Gu, L. (2015) · Plant Cell & Environment · doi:10.1111/pce.12569 · Cited by 142 · see citing works
Roberty, S., Bailleul, B., Berne, N., Franck, F., & Cardol, P. (2014) · New Phytologist · doi:10.1111/nph.12903 · Cited by 141 · see citing works
Halsey, K. H., Milligan, A. J., & Behrenfeld, M. J. (2010) · Photosynthesis Research · doi:10.1007/s11120-009-9526-z · Cited by 139 · see citing works
Distinctive Photosystem II Photoinactivation and Protein Dynamics in Marine Diatoms
Wu, H., Cockshutt, A. M., McCarthy, A., & Campbell, D. A. (2011) · PLANT PHYSIOLOGY · doi:10.1104/pp.111.178772 · Cited by 114 · see citing works
Milligan, A. J., Berman‐Frank, I., Gerchman, Y., Dismukes, G. C., & Falkowski, P. G. (2007) · Journal of Phycology · doi:10.1111/j.1529-8817.2007.00395.x · Cited by 112 · see citing works
Ware, M. A., Belgio, E., & Ruban, A. V. (2015) · Photosynthesis Research · doi:10.1007/s11120-015-0102-4 · Cited by 109 · see citing works
Physiological responses of a marine planktonic diatom to transitions in growth irradiance
Post, A. F., Dubinsky, Z., Wyman, K. D., & Falkowski, P. G. (1985) · Marine Ecology Progress Series · doi:10.3354/meps025141 · Cited by 109 · see citing works
Masojídek, J., Torzillo, G., Koblížek, M., Kopecký, J., Bernardini, P., Sacchi, A., & Komenda, J. (1999) · Planta · doi:10.1007/s004250050614 · Cited by 107 · see citing works
Grouneva, I., Jakob, T., Wilhelm, C., & Goss, R. (2009) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2009.02.004 · Cited by 103 · see citing works
Palmqvist, K., Yu, J., & Badger, M. R. (1994) · Physiologia Plantarum · doi:10.1111/j.1399-3054.1994.tb08812.x · Cited by 98 · see citing works
Treves, H., Raanan, H., Kedem, I., Murik, O., Keren, N., Zer, H., Berkowicz, S. M., Giordano, M., Norici, A., Shotland, Y., et al. (2016) · New Phytologist · doi:10.1111/nph.13870 · Cited by 97 · see citing works
the photosynthesis: Respiration ratio of some unicellular marine algae
Humphrey, G. F. (1975) · Journal of Experimental Marine Biology and Ecology · doi:10.1016/0022-0981(75)90068-4 · Cited by 86 · see citing works
Halsey, K. H., Milligan, A. J., & Behrenfeld, M. J. (2011) · Journal of Phycology · doi:10.1111/j.1529-8817.2010.00945.x · Cited by 72 · see citing works
Jallet, D., Caballero, M. A., Gallina, A. A., Youngblood, M., & Peers, G. (2016) · Algal Research · doi:10.1016/j.algal.2016.05.014 · Cited by 53 · see citing works
Self-citationBroddrick, J. T., Du, N., Smith, S. R., Tsuji, Y., Jallet, D., Ware, M. A., Peers, G., Matsuda, Y., Dupont, C. L., Mitchell, B. G., et al. (2019) · New Phytologist · doi:10.1111/nph.15685 · Cited by 51 · see citing works
Self-citationThe Fluctuating Cell-Specific Light Environment and Its Effects on Cyanobacterial Physiology
Andersson, B., Shen, C., Cantrell, M., Dandy, D. S., & Peers, G. (2019) · PLANT PHYSIOLOGY · doi:10.1104/pp.19.00480 · Cited by 38 · see citing works
Self-citationCantrell, M., & Peers, G. (2017) · PLoS ONE · doi:10.1371/journal.pone.0179395 · Cited by 29 · see citing works
Self-citationIncreasing algal photosynthetic productivity by integrating ecophysiology with systems biology
Peers, G. (2014) · Trends in biotechnology · doi:10.1016/j.tibtech.2014.09.007 · Cited by 24 · see citing works
Self-citationA Chlorophyte Alga Utilizes Alternative Electron Transport for Primary Photoprotection
Ware, M. A., Hunstiger, D., Cantrell, M., & Peers, G. (2020) · PLANT PHYSIOLOGY · doi:10.1104/pp.20.00373 · Cited by 13 · see citing works
Self-citationOakley, C. A., Hopkinson, B. M., & Schmidt, G. W. (2012) · Limnology and Oceanography Methods · doi:10.4319/lom.2012.10.968 · Cited by 7 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Dębowski, M., Kazimierowicz, J., & Zieliński, M. (2025) · Applied Sciences · doi:10.3390/app15137324 · Cited by 30 · see citing works
Light and carbon limited photosynthesis of Chlorella sorokiniana
Yoshida, H., van Oossanen, S., Barbosa, M. J., & Janssen, M. G. J. (2022) · Algal Research · doi:10.1016/j.algal.2022.102934 · Cited by 15 · see citing works
The carbon-concentrating mechanism of the extremophilic red microalga Cyanidioschyzon merolae
Steensma, A. K., Shachar‐Hill, Y., & Walker, B. J. (2023) · Photosynthesis Research · doi:10.1007/s11120-023-01000-6 · Cited by 11 · see citing works
Zhao, S., Liu, J., Xia, Z., Sun, J., Zhang, J., & He, P. (2025) · Biology · doi:10.3390/biology14060702 · Cited by 7 · see citing works
Long, D.-L., Lin, G., Yan, P., Yang, H., Deng, K., & Guo, J. (2024) · Journal of environmental chemical engineering · doi:10.1016/j.jece.2024.112054 · Cited by 6 · see citing works
Measurements of Carbon Assimilation in Aquatic Systems
Davey, P. A., & Lawson, T. (2024) · Methods in molecular biology · doi:10.1007/978-1-0716-3790-6_6 · Cited by 6 · see citing works
Chen, H., Hua, Y., Gu, R., Liu, T., Tang, J., Zhang, W., & Ge, Z. (2023) · Marine Ecology Progress Series · doi:10.3354/meps14405 · Cited by 4 · see citing works
Weigel, B. L., Castillo, G., Pata, H. K., Young, J. N., & Kodner, R. B. (2025) · New Phytologist · doi:10.1111/nph.70332 · Cited by 2 · see citing works
Rintoul, R. C., Gill, A. R., McAusland, L., Murchie, E. H., Gilliham, M., & Mortimer, J. C. (2026) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiag311 · Cited by 2 · see citing works
Jiao, Y., Liu, Y. Y., Li, B., Xiao, G., Liu, G., Ha, Y., Tian, J., Lu, S., & Mao, Y. (2026) · Bioresource Technology · doi:10.1016/j.biortech.2026.135363 · Cited by 2 · see citing works
Loew-Mendelson, E., Wickell, D., Mrozinski, C., Doan, L. I., Hupp, J., Vath, R. L., Yuan, L., & Heyduk, K. (2026) · Applications in Plant Sciences · doi:10.1002/aps3.70071 · Cited by 2 · see citing works
Self-citationGómez-Espinoza, O., Murillo-Vega, F., Guillén-Watson, R., Villalta-Romero, F., Villanueva-Ilama, M., Hernández-Castro, J. D., Maroto, J. V., Araya, F., & Núñez-Montero, K. (2025) · Photochemical & Photobiological Sciences · doi:10.1007/s43630-025-00796-7 · Cited by 1 · see citing works
Tang, Y., Qin, H., Wu, S., Wang, Z., Jin, Z., Li, G., & Li, D. (2026) · Environmental Research · doi:10.1016/j.envres.2026.123907 · Cited by 1 · see citing works
Rillema, R., Steensma, A. K., Walker, B. J., & Ducat, D. C. (2026) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiag221 · Cited by 1 · see citing works
Palma, A. D., Pallozzi, E., González, A. G., Сергеевич, П. О., Ralf Reski, A., Glime, J. M., Capozzi, F., Kávási, N., & Calfapietra, C. (2026) · New Phytologist · doi:10.1111/nph.71447 · Cited by 1 · see citing works
Anderson, A. J., Wersal, R. M., & Ruhland, C. T. (2025) · Aquatic Botany · doi:10.1016/j.aquabot.2025.103953
Exploring the biology of cyanobacteria in life support systems on Mars
Rodrigues, D., & McCormick, A. J. (2026) · Frontiers in Astronomy and Space Sciences · doi:10.3389/fspas.2026.1853934
Extreme heat drives photosynthesis–transpiration decoupling in a dominant C4 desert shrub
Jianganlike, S., Zhu, Y., Wang, X., Li, C., & Liu, R. X. (2026) · Flora · doi:10.1016/j.flora.2026.153047
Monitoring of Plankton and the Symbiosis in Maintaining Fertility in Tropical Water
Sari, L. A., Panhar, F. S. P. S., Falatehan, N., Firdaus, F. A., Sari, O. K., Abdullah, N. A., Ottoni, F. P., Arsad, S., Hasan, V., & Samara, S. H. (2026) · Baghdad Science Journal · doi:10.21123/2411-7986.5378
- Authors
- Hupp, J., McCoy, J. I. E., Millgan, A. J., & Peers, G.
- Affiliations
- LI-COR Biosciences (United States) (US)
- Oregon State University (US)
- Colorado State University (US)
- Corresponding author
- Peers, Graham
- Venue
- Algal Research
- Publisher
- Elsevier BV
- Published
- 2021-10
- Volume
- 58
- Pages
- 102399
- ISSN
- 2211-9264 (ISSN-L)
- OpenAlex
- W3180701306
- Cited by
- 20
- References
- 39
- Citations by year
- 2026: 7 · 2025: 8 · 2024: 2 · 2023: 2 · 2022: 1
- FWCI
- 0.39
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Algal Research (publishedVersion, cc-by)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Algal biology and biofuel production
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine and coastal ecosystems
- Keywords
- carbon assimilation, chlorophyll a fluorescence, microalgae, photosynthesis, CO2 flux, non-photochemical quenching, electron transport, Scenedesmus obliquus, Monoraphidium, light intensity response, photosynthetic capacity
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review