The DOI matches its Crossref record; 90 of the 90 references it cites were found in a registry or an index.
A new view of the fish gut microbiome: Advances from next-generation sequencing
Abstract
The fish gut microbiota contributes to digestion and can affect the nutrition, growth, reproduction, overall population dynamics and vulnerability of the host fish to disease; therefore, this microbial community is highly relevant for aquaculture practice. Recent advances in DNA sequencing technologies and bioinformatic analysis have allowed us to develop a broader understanding of the complex microbial communities associated with various habitats, including the fish gut microbiota. These recent advances have substantially improved our knowledge of bacterial community profiles in the fish intestinal microbiota in response to a variety of factors affecting the host, including variations in temperature, salinity, developmental stage, digestive physiology and feeding strategy. The goal of this review is to highlight the potential of next-generation sequencing platforms for analysing fish gut microbiota. Recent and promising results in this field are presented along with a focus on new perspectives and future research directions of fish gut microbial ecology.
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“When a fish consumes algal cells, the microbiome in the intestine digests the algal cell, releasing probiotic materials that inhibit pathogens (Austin, 2006;Ghanbari et al., 2015;Nayak, 2010).”
From Potential of microalgae as a sustainable feed ingredient for aquaculture (2021) · cites this paper as Ghanbari et al., 2015
In the citing paper
“Microalgae are known to have probiotic effects on fishes.”
From Potential of microalgae as a sustainable feed ingredient for aquaculture (2021) · cites this paper as Ghanbari et al., 2015
Citations
Cites
A human gut microbial gene catalogue established by metagenomic sequencing
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A core gut microbiome in obese and lean twins
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Sequencing technologies – the next generation
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Evolution of mammals and their gut microbes
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Next-Generation DNA Sequencing Methods
Mardis, E. R. (2008) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.9.081307.164359 · Cited by 2,469
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Removing Noise From Pyrosequenced Amplicons
Quince, C., Lanzén, A., Davenport, R. J., & Turnbaugh, P. J. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-38 · Cited by 1,634
Comparison of Next-Generation Sequencing Systems
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Cited by
Sorted by citations
The Gut Microbiota of Marine Fish
Egerton, S., Culloty, S. C., Whooley, J., Stanton, C., & Ross, R. P. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00873 · Cited by 1,016
“Since then, anaerobic bacterial species, frequently of the phylum Firmicutes and class Clostridia, have been repeatedly identified in the digestive tracts of herbivorous fish (Mouchet et al., 2012).”
InfluentialProgress in fish gastrointestinal microbiota research
Wang, A. R., Ran, C., Ringø, E., & Zhou, Z. G. (2017) · Reviews in Aquaculture · doi:10.1111/raq.12191 · Cited by 741
Gut Microbiota and Energy Homeostasis in Fish
Butt, R. L., & Volkoff, H. (2019) · Frontiers in Endocrinology · doi:10.3389/fendo.2019.00009 · Cited by 637
The sponge holobiont in a changing ocean: from microbes to ecosystems
Pita, L., Rix, L., Slaby, B. M., Franke, A., & Hentschel, U. (2018) · Microbiome · doi:10.1186/s40168-018-0428-1 · Cited by 603
Colston, T. J., & Jackson, C. R. (2016) · Molecular Ecology · doi:10.1111/mec.13730 · Cited by 519
“This supports the hypothesis that while the gut microbiomes of fish are more similar to the microbiome of their environments than those of mammals, both phylogenetic factors and host ecology interact to structure the fish endogenous microbial community (Ghanbari et al. 2015).”
Background
Metadata
- Authors
- Ghanbari, M., Kneifel, W., & Domig, K. J.
- Affiliations
- Zabol University (IR)
- BOKU University (AT)
- Corresponding author
- Ghanbari, Mahdi
- Venue
- Aquaculture
- Publisher
- Elsevier BV
- Published
- 2015-11
- Volume
- 448
- Pages
- 464-475
- ISSN
- 0044-8486 (ISSN-L)
- OpenAlex
- W1004644096
- Cited by
- 669
- References
- 90
- Citations by year
- 2026: 45 · 2025: 69 · 2024: 82 · 2023: 88 · 2022: 88 · 2021: 93 · 2020: 68 · 2019: 52 · 2018: 37 · 2017: 24 · 2016: 19 · 2015: 2
- FWCI
- 13.45
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Aquaculture (publishedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Aquaculture disease management and microbiota
- Life Sciences › Agricultural and Biological Sciences › Aquatic Science › Aquaculture Nutrition and Growth
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- fish gut microbiota, gut microbiota, microbial ecology, host factors, temperature, salinity, developmental stages, digestive physiology, feeding strategies
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