A proteomics approach to identify the ubiquitinated proteins in mouse heart

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A second chance for protein targeting/folding: Ubiquitination and deubiquitination of nascent proteins

Culver, J. A., Li, X., Jordan, M., & Mariappan, M. (2022) · BioEssays · doi:10.1002/bies.202200014 · Cited by 17 · see citing works

The Emerging Role of Proteolysis in Mitochondrial Quality Control and the Etiology of Parkinson’s Disease

Shanbhag, R., Shi, G., Rujiviphat, J., & McQuibban, G. A. (2012) · Parkinson s Disease · doi:10.1155/2012/382175 · Cited by 17 · see citing works

Cytosolic Quality Control of Mitochondrial Protein Precursors—The Early Stages of the Organelle Biogenesis

Lenkiewicz, A. M., Krakowczyk, M., & Brągoszewski, P. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms23010007 · Cited by 16 · see citing works

Purification and mass spectrometric analysis of the κ opioid receptor

Wannemacher, K. M., Terskiy, A., Bian, S., Yadav, P. N., Hong Li, A., & Howells, R. (2008) · Brain Research · doi:10.1016/j.brainres.2008.06.121 · Cited by 16 · see citing works

Targeting Mitochondria during Cold Storage to Maintain Proteasome Function and Improve Renal Outcome after Transplantation

Lo, S., Blaszak, R. T., & Parajuli, N. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21103506 · Cited by 15 · see citing works

Recent advances in defining the ubiquitylome

Porras-Yakushi, T. R., & Hess, S. Y. (2014) · Expert Review of Proteomics · doi:10.1586/14789450.2014.926223 · Cited by 15 · see citing works

Mass Spectrometric Determination of Protein Ubiquitination

Parker, C. E., Warren, M. R. E., Mocanu, V., Greer, S. F., & Borchers, C. H. (2008) · Humana Press eBooks · doi:10.1007/978-1-60327-084-7_8 · Cited by 14 · see citing works

Targeting mitochondrial quality control in muscle aging: Natural dietary products as potential interventions

Chen, Q., Huang, W., Çapanoğlu, E., Amrouche, A. T., & Lu, B. (2023) · Food Frontiers · doi:10.1002/fft2.261 · Cited by 12 · see citing works

The maladaptive effects of HIV protease inhibitors (lopinavir/ritonavir) on the rat heart

Reyskens, K. M. S. E., & Essop, M. F. (2013) · International Journal of Cardiology · doi:10.1016/j.ijcard.2013.04.128 · Cited by 12 · see citing works

Proteomic Survey of Ubiquitin-Linked Nuclear Proteins in Interferon-Stimulated Macrophages

Kim, J. Y., Anderson, D. E., Huynh, W., Dey, A., & Ozato, K. (2011) · Journal of Interferon & Cytokine Research · doi:10.1089/jir.2011.0006 · Cited by 11 · see citing works

Profiling Lysine Ubiquitination by Selective Enrichment of Ubiquitin Remnant-Containing Peptides

Xu, G., Deglincerti, A., Paige, J. S., & Jaffrey, S. R. (2014) · Methods in molecular biology · doi:10.1007/978-1-4939-0944-5_4 · Cited by 10 · see citing works

Proteomics‐based investigations of animal models of disease

Bousette, N., Gramolini, A. O., & Kislinger, T. (2008) · PROTEOMICS - CLINICAL APPLICATIONS · doi:10.1002/prca.200780043 · Cited by 10 · see citing works

Bioinformatics advances in protein ubiquitination

Liang, L. U., Li, D., & He, F. (2013) · Hereditas (Beijing) · doi:10.3724/sp.j.1005.2013.00017 · Cited by 10 · see citing works

Quantitative affinity interaction of ubiquitinated and non-ubiquitinated proteins with proteasome subunit Rpn10

Бунеева, О. А., Gnedenko, O. V., Kopylov, A. T., Medvedeva, M. V., Zgoda, V. G., Ivanov, A. S., & Medvedev, A. E. (2017) · Biochemistry (Moscow) · doi:10.1134/s0006297917090073 · Cited by 7 · see citing works

Use of Biotinylated Ubiquitin for Analysis of Rat Brain Mitochondrial Proteome and Interactome

Бунеева, О. А., Медведева, М. В., Kopylov, A. T., Zgoda, V. G., & Medvedev, A. E. (2012) · International Journal of Molecular Sciences · doi:10.3390/ijms130911593 · Cited by 6 · see citing works

Ubiquitin Subproteome of Brain Mitochondria and Its Changes Induced by Experimental Parkinsonism and Action of Neuroprotectors

Бунеева, О. А., Medvedeva, M. V., Kopylov, A. T., & Medvedev, A. E. (2019) · Biochemistry (Moscow) · doi:10.1134/s0006297919110117 · Cited by 6 · see citing works

Differential Proteomic Screen To Evidence Proteins Ubiquitinated upon Mitotic Exit in Cell-Free Extract of Xenopus laevis Embryos

Bazile, F., Gagné, J., Mercier, G., Lo, K. S., Pascal, A., Vasilescu, J., Figeys, D., Poirier, G. G., Kubiak, J. Z., & Chesnel, F. (2008) · Journal of Proteome Research · doi:10.1021/pr800250x · Cited by 6 · see citing works

Correction: Cardio-Metabolic Effects of HIV Protease Inhibitors (Lopinavir/Ritonavir)

Reyskens, K. M. S. E., Fisher, T.-L., Schisler, J. C., O'Connor, W. G., Rogers, A. B., Willis, M. S., Planesse, C., Boyer, F., Rondeau, P., Bourdon, E., et al. (2013) · PLoS ONE · doi:10.1371/annotation/a1e2a42f-7f10-4654-a042-57d19de50208 · Cited by 6 · see citing works

Mitochondrial proteostasis regulated by CRL5Ozz and Alix modulates skeletal muscle metabolism and fiber type

Campos, Y., Palacios, G., Gomero, E. M., van de Vlekkert, D., Venkataraman, K., John, J., Weesner, J. A., Wakefield, R., Qiu, X., Rodriguez-Enriquez, R., et al. (2025) · Communications Biology · doi:10.1038/s42003-025-09363-3 · Cited by 4 · see citing works

Isolation of the Hepatic Ubiquitome/NEDDylome by Streptavidin Pull-Down Assay in the Biotinylated Ubiquitin (bioUb)/Biotinylated NEDD8 (bioNEDD8) Transgenic Mice

Serrano‐Maciá, M., Delgado, T. C., & Martínez‐Chantar, M. L. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2859-1_11 · Cited by 4 · see citing works

Going Global on Ubiquitin

Grabbe, C., & Đikić, I. (2008) · Science · doi:10.1126/science.1166845 · Cited by 4 · see citing works

Application of Proteomics in Cardiovascular Research

Dekkers, D. H. W., Bezstarosti, K., Kuster, D. W. D., Verhoeven, A. J. M., & Das, D. K. (2010) · Current Proteomics · doi:10.2174/157016410791330534 · Cited by 4 · see citing works

Cellular signaling pathways with reactive oxygen species (ROS)

Madkour, L. H. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-822481-6.00003-7 · Cited by 3 · see citing works

Mass Spectrometric Determination of Protein Ubiquitination

Parker, C. E., Hines, M., Mocanu, V., Greer, S. F., & Borchers, C. H. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9055-9_13 · Cited by 3 · see citing works

Consequences of Oxidative Stress and ROS-Mediated Pathways Cellular Signaling Stress Response

Madkour, L. H. (2020) · Nanomedicine and nanotoxicology · doi:10.1007/978-3-030-37297-2_5 · Cited by 1 · see citing works

Mass Spectrometric Determination of Protein Ubiquitination

Parker, C. E., Hines, M. W., Mocanu, V., Greer, S. F., & Borchers, C. H. (2009) · Springer protocols handbooks/Springer protocols · doi:10.1007/978-1-59745-198-7_157 · Cited by 1 · see citing works

Functional analysis of mammalian m-AAA proteases

Ehses, S. (2008) · Kölner Universitäts PublikationsServer (Universität zu Köln) · Cited by 1 · see citing works

Studies of enzymes in mitochondrial DNA precursor synthesis

Sun, R. (2013) · Epsilon Open Archive (Sveriges lantbruksuniversitet biblioteket (Swedish University of Agricultural Sciences))

Expression and interactions of the ubiquitin receptor ZNF216

Strachan, J. (2012) · Nottingham ePrints (University of Nottingham)

Proteomics of mouse cortex following conditional deletion of Psmc1 proteasomal subunit in neurones

Elkharaz, J. (2013) · Nottingham ePrints (University of Nottingham)

Studies of Enzymes in Mitochondrial DNA Precursor Synthesis Regulatory Mechanisms for Human Thymidine Kinase 2 and Deoxyguanosine Kinase

Sun, R. (2013)

Future Research Directions

Dong, X., Yang, R., Li, Y., & Xu, A. (2016) · Elsevier eBooks · doi:10.1016/b978-0-12-849903-0.00013-0

Proteomic Strategies for Understanding Cardiac Function, Development, and Disease

Himeda, C. L., & Hauschka, S. (2010) · Elsevier eBooks · doi:10.1016/b978-0-12-381332-9.00037-2

Computational Pipelines for Protein Ubiquitylation Analysis and Prediction

Potapenko, A., Henden, L., Azemi, G., Ieva, A. D., Laird, A. S., Chung, R. S., Lee, A., & Davidson, J. M. (2026) · Methods in molecular biology · doi:10.1007/978-1-0716-5166-7_4

Identification of ubiquitin-conjugated proteins from mouse heart expressing tagged ubiquitin

Jeon, H. B., Choi, H. W., Lim, H.-L., Park, Z., & Yoo, Y. J. (2007) · The FASEB Journal

Diggin′ on U(biquitin): A Novel Method for the Identification of Physiological E3 Ubiquitin Ligase Substrates

Rubel, C. E., Schisler, J. C., Hamlett, E. D., DeKroon, R. M., Gautel, M., Álzate, Ó., & Patterson, C. (2013) · Cell Biochemistry and Biophysics · doi:10.1007/s12013-013-9624-6 · Cited by 18 · see citing works

Immunolocalization of ubiquitin conjugates at Z-bands and intercalated discs of rat cardiomyocytes in vitro and in vivo.

Hilenski, L. L., Terracio, L., Haas, A. L., & Borg, T. K. (1992) · Journal of Histochemistry & Cytochemistry · doi:10.1177/40.7.1318894 · Cited by 33 · see citing works

Lysine ubiquitination and acetylation of human cardiac 20S proteasomes

Zong, C., Ping, P., Lau, E., Choi, H. J. H., Ng, D. C. M., Meyer, D., Fang, C., Li, H., Wang, D., Zelaya, I., et al. (2014) · PROTEOMICS - CLINICAL APPLICATIONS · doi:10.1002/prca.201400029 · Cited by 18 · see citing works

A Data Set of Human Endogenous Protein Ubiquitination Sites

Shi, Y., Chan, D. W., Jung, S. Y., Malovannaya, A., Wang, Y., & Qin, J. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m110.002089 · Cited by 90 · see citing works