Cited by 217

Functional roles of non-coding Y RNAs

Kowalski, Madzia P., Krude, Torsten·2015·The International Journal of Biochemistry & Cell Biology

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.biocel.2015.07.003

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The precise biological function of Rny1 and Rny3 is undefined, although they have been suggested to maintain RNA stability.

    “The precise biological function of Rny1 and Rny3 is so far undefined, although they have been suggested to maintain RNA stability (38).”

    From A mouse tissue atlas of small noncoding RNA (2020) · cites this paper as [38]

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

No references could be resolved yet.

Research works printed but not linked: 104

  1. Aftab M.N. He H. Skogerbo G. Chen R. Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins BMC Genomics 9 2008 278 18547420 PMC2442092
  2. Belisova A. Semrad K. Mayer O. Kocian G. Waigmann E. Schroeder R. Steiner G. RNA chaperone activity of protein components of human Ro RNPs RNA 11 2005 1084 1094 15928345 PMC1370793
  3. Blow J.J. Dilworth S.M. Dingwall C. Mills A.D. Laskey R.A. Chromosome replication in cell-free systems from Xenopus eggs Philos. Trans. R. Soc. Lond. B: Biol. Sci. 317 1987 483 494 2894683
  4. Boria I. Gruber A.R. Tanzer A. Bernhart S.H. Lorenz R. Mueller M.M. Hofacker I.L. Stadler P.F. Nematode sbRNAs: homologs of vertebrate Y RNAs J. Mol. Evol. 70 2010 346 358 20349053
  5. Bouffard P. Barbar E. Briere F. Boire G. Interaction cloning and characterization of RoBPI, a novel protein binding to human Ro ribonucleoproteins RNA 6 2000 66 78 10668799 PMC1369894
  6. Chen C.J. Heard E. Small RNAs derived from structural non-coding RNAs Methods 63 2013 76 84 23684746
  7. Chen X. Liang H. Zhang J. Zen K. Zhang C.Y. Horizontal transfer of microRNAs: molecular mechanisms and clinical applications Protein Cell 3 2012 28 37 22314808 PMC4875218
  8. Chen X. Quinn A.M. Wolin S.L. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation Genes Dev. 14 2000 777 782 10766734 PMC316496
  9. Chen X. Sim S. Wurtmann E.J. Feke A. Wolin S.L. Bacterial noncoding Y RNAs are widespread and mimic tRNAs RNA 20 2014 1715 1724 25232022 PMC4201824
  10. Chen X. Smith J.D. Shi H. Yang D.D. Flavell R.A. Wolin S.L. The Ro autoantigen binds misfolded U2 small nuclear RNAs and assists mammalian cell survival after UV irradiation Curr. Biol. 13 2003 2206 2211 14680639
  11. Chen X. Taylor D.W. Fowler C.C. Galan J.E. Wang H.W. Wolin S.L. An RNA degradation machine sculpted by Ro autoantigen and noncoding RNA Cell 153 2013 166 177 23540697 PMC3646564
  12. Chen X. Wolin S.L. The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity J. Mol. Med. (Berl.) 82 2004 232 239 15168680
  13. Chen X. Wurtmann E.J. Van Batavia J. Zybailov B. Washburn M.P. Wolin S.L. An ortholog of the Ro autoantigen functions in 23S rRNA maturation in D. radiodurans Genes Dev. 21 2007 1328 1339 17510283 PMC1877746
  14. Chiu Y.L. Witkowska H.E. Hall S.C. Santiago M. Soros V.B. Esnault C. Heidmann T. Greene W.C. High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition Proc. Natl. Acad. Sci. U. S. A. 103 2006 15588 15593 17030807 PMC1592537
  15. Christov C.P. Gardiner T.J. Szüts D. Krude T. Functional requirement of noncoding Y RNAs for human chromosomal DNA replication Mol. Cell. Biol. 26 2006 6993 7004 16943439 PMC1592862
  16. Christov C.P. Trivier E. Krude T. Noncoding human Y RNAs are overexpressed in tumours and required for cell proliferation Br. J. Cancer 98 2008 981 988 18283318 PMC2266855
  17. Clark M.B. Amaral P.P. Schlesinger F.J. Dinger M.E. Taft R.J. Rinn J.L. Ponting C.P. Stadler P.F. Morris K.V. Morillon A. Rozowsky J.S. Gerstein M.B. Wahlestedt C. Hayashizaki Y. Carninci P. Gingeras T.R. Mattick J.S. The reality of pervasive transcription PLoS Biol. 9 2011 e1000625 discussion e1001102 21765801 PMC3134446
  18. Collart C. Christov C.P. Smith J.C. Krude T. The midblastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis Mol. Cell. Biol. 31 2011 3857 3870 21791613 PMC3165727
  19. Deng W. Zhu X. Skogerbo G. Zhao Y. Fu Z. Wang Y. He H. Cai L. Sun H. Liu C. Li B. Bai B. Wang J. Jia D. Sun S. He H. Cui Y. Wang Y. Bu D. Chen R. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression Genome Res. 16 2006 20 29 16344563 PMC1356125
  20. Dhahbi J.M. Circulating small noncoding RNAs as biomarkers of aging Ageing Res. Rev. 17 2014 86 98 24607831
  21. Dhahbi J.M. Spindler S.R. Atamna H. Boffelli D. Martin D.I. Deep sequencing of serum small RNAs identifies patterns of 5′ tRNA half and YRNA fragment expression associated with breast cancer Biomark. Cancer 6 2014 37 47 25520563 PMC4260766
  22. Dhahbi J.M. Spindler S.R. Atamna H. Boffelli D. Mote P. Martin D.I. 5′-YRNA fragments derived by processing of transcripts from specific YRNA genes and pseudogenes are abundant in human serum and plasma Physiol. Genomics 45 2013 990 998 24022222
  23. Duarte F.F. Jr. de Lima Neto Q.A. Rando Fdos S. de Freitas D.V. Pattaro Junior J.R. Polizelli L.G. Munhoz R.E. Seixas F.A. Fernandez M.A. Identification and molecular structure analysis of a new noncoding RNA, a sbRNA homolog, in the silkworm Bombyx mori genome Mol. BioSyst. 11 2015 801 808 25521575
  24. Fabini G. Raijmakers R. Hayer S. Fouraux M.A. Pruijn G.J. Steiner G. The heterogeneous nuclear ribonucleoproteins I and K interact with a subset of the Ro ribonucleoprotein-associated Y RNAs in vitro and in vivo J. Biol. Chem. 276 2001 20711 20718 11279198
  25. Fabini G. Rutjes S.A. Zimmermann C. Pruijn G.J. Steiner G. Analysis of the molecular composition of Ro ribonucleoprotein complexes. Identification of novel Y RNA-binding proteins Eur. J. Biochem. 267 2000 2778 2789 10785401
  26. Farris A.D. Gross J.K. Hanas J.S. Harley J.B. Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6 Gene 174 1996 35 42 8863726
  27. Farris A.D. Koelsch G. Pruijn G.J. van Venrooij W.J. Harley J.B. Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis Nucleic Acids Res. 27 1999 1070 1078 9927741 PMC148288
  28. Farris A.D. Puvion-Dutilleul F. Puvion E. Harley J.B. Lee L.A. The ultrastructural localization of 60-kDa Ro protein and human cytoplasmic RNAs: association with novel electron-dense bodies Proc. Natl. Acad. Sci. U. S. A. 94 1997 3040 3045 9096342 PMC20318
  29. Fouraux M.A. Bouvet P. Verkaart S. van Venrooij W.J. Pruijn G.J. Nucleolin associates with a subset of the human Ro ribonucleoprotein complexes J. Mol. Biol. 320 2002 475 488 12096904
  30. Fuchs G. Stein A.J. Fu C. Reinisch K.M. Wolin S.L. Structural and biochemical basis for misfolded RNA recognition by the Ro autoantigen Nat. Struct. Mol. Biol. 13 2006 1002 1009 17041599
  31. Gallois-Montbrun S. Holmes R.K. Swanson C.M. Fernandez-Ocana M. Byers H.L. Ward M.A. Malim M.H. Comparison of cellular ribonucleoprotein complexes associated with the APOBEC3F and APOBEC3G antiviral proteins J. Virol. 82 2008 5636 5642 18367521 PMC2395208
  32. Garcia E.L. Onafuwa-Nuga A. Sim S. King S.R. Wolin S.L. Telesnitsky A. Packaging of host mY RNAs by murine leukemia virus may occur early in Y RNA biogenesis J. Virol. 83 2009 12526 12534 19776129 PMC2786734
  33. Gardiner T.J. Christov C.P. Langley A.R. Krude T. A conserved motif of vertebrate Y RNAs essential for chromosomal DNA replication RNA 15 2009 1375 1385 19474146 PMC2704080
  34. Gendron M. Roberge D. Boire G. Heterogeneity of human Ro ribonucleoproteins (RNPS): nuclear retention of Ro RNPS containing the human hY5 RNA in human and mouse cells Clin. Exp. Immunol. 125 2001 162 168 11472440 PMC1906090
  35. Ginisty H. Sicard H. Roger B. Bouvet P. Structure and functions of nucleolin J. Cell Sci. 112 Pt 6 1999 761 772 10036227
  36. Green C.D. Long K.S. Shi H. Wolin S.L. Binding of the 60-kDa Ro autoantigen to Y RNAs: evidence for recognition in the major groove of a conserved helix RNA 4 1998 750 765 9671049 PMC1369656
  37. Gwizdek C. Bertrand E. Dargemont C. Lefebvre J.C. Blanchard J.M. Singer R.H. Doglio A. Terminal minihelix, a novel RNA motif that directs polymerase III transcripts to the cell cytoplasm. Terminal minihelix and RNA export J. Biol. Chem. 276 2001 25910 25918 11342536
  38. Gwizdek C. Ossareh-Nazari B. Brownawell A.M. Doglio A. Bertrand E. Macara I.G. Dargemont C. Exportin-5 mediates nuclear export of minihelix-containing RNAs J. Biol. Chem. 278 2003 5505 5508 12509441
  39. Hall A.E. Dalmay T. Discovery of novel small RNAs in the quest to unravel genome complexity Biochem. Soc. Trans. 41 2013 866 870 23863146
  40. Hall A.E. Turnbull C. Dalmay T. Y RNAs: recent developments Biomol. Concepts 4 2013 103 110 25436569
  41. Hendrick J.P. Wolin S.L. Rinke J. Lerner M.R. Steitz J.A. Ro small cytoplasmic ribonucleoproteins are a subclass of La ribonucleoproteins: further characterization of the Ro and La small ribonucleoproteins from uninfected mammalian cells Mol. Cell. Biol. 1 1981 1138 1149 6180298 PMC369740
  42. Hogg J.R. Collins K. Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomal RNA quality control Genes Dev. 21 2007 3067 3072 18056422 PMC2081973
  43. Hoy A.M. Buck A.H. Extracellular small RNAs: what, where, why? Biochem. Soc. Trans. 40 2012 886 890 22817753 PMC3433256
  44. Iyer M.K. Niknafs Y.S. Malik R. Singhal U. Sahu A. Hosono Y. Barrette T.R. Prensner J.R. Evans J.R. Zhao S. Poliakov A. Cao X. Dhanasekaran S.M. Wu Y.M. Robinson D.R. Beer D.G. Feng F.Y. Iyer H.K. Chinnaiyan A.M. The landscape of long noncoding RNAs in the human transcriptome Nat. Genet. 47 2015 199 208 25599403 PMC4417758
  45. Köhn M. Pazaitis N. Huttelmaier S. Why YRNAs? About versatile RNAs and their functions Biomolecules 3 2013 143 156 24970161 PMC4030889
  46. Kowalski M.P. Baylis H.A. Krude T. Non-coding stem-bulge RNAs are required for cell proliferation and embryonic development in C. elegans J. Cell Sci. 128 2015 2118 2129 25908866 PMC4450293
  47. Krecic A.M. Swanson M.S. hnRNP complexes: composition, structure, and function Curr. Opin. Cell Biol. 11 1999 363 371 10395553
  48. Krude T. Initiation of human DNA replication in vitro using nuclei from cells arrested at an initiation-competent state J. Biol. Chem. 275 2000 13699 13707 10788489
  49. Krude T. Non-coding RNAs: new players in the field of eukaryotic DNA replication Subcell Biochem. 50 2010 105 118 20012579
  50. Krude T. Christov C.P. Hyrien O. Marheineke K. Y RNA functions at the initiation step of mammalian chromosomal DNA replication J. Cell Sci. 122 2009 2836 2845 19657016
  51. Krude T. Jackman M. Pines J. Laskey R.A. Cyclin/Cdk-dependent initiation of DNA replication in a human cell-free system Cell 88 1997 109 119 9019396
  52. Labbe J.C. Burgess J. Rokeach L.A. Hekimi S. ROP-1, an RNA quality-control pathway component, affects Caenorhabditis elegans dauer formation Proc. Natl. Acad. Sci. U. S. A. 97 2000 13233 13238 11069285 PMC27208
  53. Labbe J.C. Hekimi S. Rokeach L.A. Assessing the function of the Ro ribonucleoprotein complex using Caenorhabditis elegans as a biological tool Biochem. Cell Biol. 77 1999 349 354 10546898
  54. Labbe J.C. Hekimi S. Rokeach L.A. The levels of the RoRNP-associated Y RNA are dependent upon the presence of ROP-1, the Caenorhabditis elegans Ro60 protein Genetics 151 1999 143 150 9872955 PMC1460465
  55. Langenberger D. Cakir M.V. Hoffmann S. Stadler P.F. Dicer-processed small RNAs: rules and exceptions J. Exp. Zool. B: Mol. Dev. Evol. 320 2013 35 46 23165937
  56. Langley A.R. Chambers H. Christov C.P. Krude T. Ribonucleoprotein particles containing non-coding Y RNAs, Ro60, La and nucleolin are not required for Y RNA function in DNA replication PLoS ONE 5 2010 e13673 21060685 PMC2965120
  57. Langley A.R. Smith J.C. Stemple D.L. Harvey S.A. New insights into the maternal to zygotic transition Development 141 2014 3834 3841 25294937
  58. Laskey R.A. Harland R.M. Earnshaw W.C. Dingwall C. Chromatin assembly and the co-ordination of DNA replication in the eukaryotic chromosome Schweiger H.G. International Cell Biology 1980–1981 1981 Springer Verlag Berlin 162 167
  59. Lerner M.R. Boyle J.A. Hardin J.A. Steitz J.A. Two novel classes of small ribonucleoproteins detected by antibodies associated with lupus erythematosus Science 211 1981 400 402 6164096
  60. Maraia R. Sakulich A.L. Brinkmann E. Green E.D. Gene encoding human Ro-associated autoantigen Y5 RNA Nucleic Acids Res. 24 1996 3552 3559 8836182 PMC146121
  61. Maraia R.J. Sasaki-Tozawa N. Driscoll C.T. Green E.D. Darlington G.J. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes Nucleic Acids Res. 22 1994 3045 3052 7520568 PMC310274
  62. Matera A.G. Frey M.R. Margelot K. Wolin S.L. A perinucleolar compartment contains several RNA polymerase III transcripts as well as the polypyrimidine tract-binding protein, hnRNP I J. Cell Biol. 129 1995 1181 1193 7539809 PMC2120477
  63. Meiri E. Levy A. Benjamin H. Ben-David M. Cohen L. Dov A. Dromi N. Elyakim E. Yerushalmi N. Zion O. Lithwick-Yanai G. Sitbon E. Discovery of microRNAs and other small RNAs in solid tumors Nucleic Acids Res. 38 2010 6234 6246 20483914 PMC2952848
  64. Mosig A. Guofeng M. Stadler B.M.R. Stadler P.F. Evolution of the vertebrate Y RNA cluster Theory Biosci. 129 2007 9 14 18087752
  65. Nicolas F.E. Hall A.E. Csorba T. Turnbull C. Dalmay T. Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway FEBS Lett. 586 2012 1226 1230 22575660
  66. Nolte-’t Hoen E.N. Buermans H.P. Waasdorp M. Stoorvogel W. Wauben M.H. ’t Hoen P.A. Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions Nucleic Acids Res. 40 2012 9272 9285 22821563 PMC3467056
  67. O’Brien C.A. Margelot K. Wolin S.L. Xenopus Ro ribonucleoproteins: members of an evolutionarily conserved class of cytoplasmic ribonucleoproteins Proc. Natl. Acad. Sci. U. S. A. 90 1993 7250 7254 7688474 PMC47114
  68. O’Brien C.A. Wolin S.L. A possible role for the 60-kD Ro autoantigen in a discard pathway for defective 5S rRNA precursors Genes Dev. 8 1994 2891 2903 7995526
  69. Page-McCaw P.S. Amonlirdviman K. Sharp P.A. PUF60: a novel U2AF65-related splicing activity RNA 5 1999 1548 1560 10606266 PMC1369877
  70. Peek R. Pruijn G.J. van der Kemp A.J. van Venrooij W.J. Subcellular distribution of Ro ribonucleoprotein complexes and their constituents J. Cell Sci. 106 Pt 3 1993 929 935 7508449
  71. Perreault J. Perreault J.P. Boire G. The Ro associated Y RNAs in metazoans: evolution and diversification Mol. Biol. Evol. 24 2007 1678 1689 17470436
  72. Pruijn G.J. Simons F.H. van Venrooij W.J. Intracellular localization and nucleocytoplasmic transport of Ro RNP components Eur. J. Cell Biol. 74 1997 123 132 9352217
  73. Pruijn G.J. Slobbe R.L. van Venrooij W.J. Analysis of protein–RNA interactions within Ro ribonucleoprotein complexes Nucleic Acids Res. 19 1991 5173 5180 1833722 PMC328872
  74. Rother S. Meister G. Small RNAs derived from longer non-coding RNAs Biochimie 93 2011 1905 1915 21843590
  75. Rutjes S.A. Lund E. van der Heijden A. Grimm C. van Venrooij W.J. Pruijn G.J. Identification of a novel cis-acting RNA element involved in nuclear export of hY RNAs RNA 7 2001 741 752 11350038 PMC1370126
  76. Rutjes S.A. van der Heijden A. Utz P.J. van Venrooij W.J. Pruijn G.J. Rapid nucleolytic degradation of the small cytoplasmic Y RNAs during apoptosis J. Biol. Chem. 274 1999 24799 24807 10455152
  77. Sarkies P. Miska E.A. Small RNAs break out: the molecular cell biology of mobile small RNAs Nat Rev. Mol. Cell Biol. 15 2014 525 535 25053358
  78. Sim S. Weinberg D.E. Fuchs G. Choi K. Chung J. Wolin S.L. The subcellular distribution of an RNA quality control protein, the Ro autoantigen, is regulated by noncoding Y RNA binding Mol. Biol. Cell 20 2009 1555 1564 19116308 PMC2649258
  79. Sim S. Wolin S.L. Emerging roles for the Ro 60-kDa autoantigen in noncoding RNA metabolism Wiley Interdiscip. Rev. RNA 2 2011 686 699 21823229 PMC3154076
  80. Sim S. Yao J. Weinberg D.E. Niessen S. Yates J.R. 3rd Wolin S.L. The zipcode-binding protein ZBP1 influences the subcellular location of the Ro 60-kDa autoantigen and the noncoding Y3 RNA RNA 18 2012 100 110 22114317 PMC3261732
  81. Simons F.H. Pruijn G.J. van Venrooij W.J. Analysis of the intracellular localization and assembly of Ro ribonucleoprotein particles by microinjection into Xenopus laevis oocytes J. Cell Biol. 125 1994 981 988 8195301 PMC2120048
  82. Simons F.H. Rutjes S.A. van Venrooij W.J. Pruijn G.J. The interactions with Ro60 and La differentially affect nuclear export of hY1 RNA RNA 2 1996 264 273 8608450 PMC1369369
  83. Stefano J.E. Purified lupus antigen La recognizes an oligouridylate stretch common to the 3′ termini of RNA polymerase III transcripts Cell 36 1984 145 154 6607117
  84. Stein A.J. Fuchs G. Fu C. Wolin S.L. Reinisch K.M. Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity Cell 121 2005 529 539 15907467 PMC1769319
  85. Steitz J.A. Berg C. Hendrick J.P. La Branche-Chabot H. Metspalu A. Rinke J. Yario T. A 5S rRNA/L5 complex is a precursor to ribosome assembly in mammalian cells J. Cell Biol. 106 1988 545 556 3279045 PMC2115095
  86. Teunissen S.W. Kruithof M.J. Farris A.D. Harley J.B. van Venrooij W.J. Pruijn G.J. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures Nucleic Acids Res. 28 2000 610 619 10606662 PMC102524
  87. Tuck A.C. Tollervey D. RNA in pieces Trends Genet. 27 2011 422 432 21741109
  88. Valadi H. Ekstrom K. Bossios A. Sjostrand M. Lee J.J. Lotvall J.O. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells Nat. Cell Biol. 9 2007 654 659 17486113
  89. van Gelder C.W. Thijssen J.P. Klaassen E.C. Sturchler C. Krol A. van Venrooij W.J. Pruijn G.J. Common structural features of the Ro RNP associated hY1 and hY5 RNAs Nucleic Acids Res. 22 1994 2498 2506 8041611 PMC308201
  90. Van Horn D.J. Eisenberg D. O’Brien C.A. Wolin S.L. Caenorhabditis elegans embryos contain only one major species of Ro RNP RNA 1 1995 293 303 7489501 PMC1369082
  91. Verhagen A.P. Pruijn G.J. Are the Ro RNP-associated Y RNAs concealing microRNAs? Y RNA-derived miRNAs may be involved in autoimmunity Bioessays 33 2011 674 682 21735459
  92. Vojtech L. Woo S. Hughes S. Levy C. Ballweber L. Sauteraud R.P. Strobl J. Westerberg K. Gottardo R. Tewari M. Hladik F. Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions Nucleic Acids Res. 42 2014 7290 7304 24838567 PMC4066774
  93. Wang I. Kowalski M.P. Langley A.R. Rodriguez R. Balasubramanian S. Hsu S.T. Krude T. Nucleotide contributions to the structural integrity and DNA replication initiation activity of noncoding y RNA Biochemistry 53 2014 5848 5863 25151917
  94. Wang T. Tian C. Zhang W. Luo K. Sarkis P.T. Yu L. Liu B. Yu Y. Yu X.F. 7SL RNA mediates virion packaging of the antiviral cytidine deaminase APOBEC3G J. Virol. 81 2007 13112 13124 17881443 PMC2169093
  95. Wolin S.L. Belair C. Boccitto M. Chen X. Sim S. Taylor D.W. Wang H.W. Non-coding Y RNAs as tethers and gates: insights from bacteria RNA Biol. 10 2013 1602 1608 24036917 PMC3866240
  96. Wolin S.L. Cedervall T. The La protein Annu. Rev. Biochem. 71 2002 375 403 12045101
  97. Wolin S.L. Sim S. Chen X. Nuclear noncoding RNA surveillance: is the end in sight? Trends Genet. 28 2012 306 313 22475369 PMC3378728
  98. Wolin S.L. Steitz J.A. Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome Cell 32 1983 735 744 6187471
  99. Wolin S.L. Steitz J.A. The Ro small cytoplasmic ribonucleoproteins: identification of the antigenic protein and its binding site on the Ro RNAs Proc. Natl. Acad. Sci. U. S. A. 81 1984 1996 2000 6201849 PMC345423
  100. Wurtmann E.J. Wolin S.L. A role for a bacterial ortholog of the Ro autoantigen in starvation-induced rRNA degradation Proc. Natl. Acad. Sci. U. S. A. 107 2010 4022 4027 20160119 PMC2840137
  101. Xiao T. Wang Y. Luo H. Liu L. Wei G. Chen X. Sun Y. Chen X. Skogerbo G. Chen R. A differential sequencing-based analysis of the C. elegans noncoding transcriptome RNA 18 2012 626 639 22345127 PMC3312551
  102. Xue D. Shi H. Smith J.D. Chen X. Noe D.A. Cedervall T. Yang D.D. Eynon E. Brash D.E. Kashgarian M. Flavell R.A. Wolin S.L. A lupus-like syndrome develops in mice lacking the Ro 60-kDa protein, a major lupus autoantigen Proc. Natl. Acad. Sci. U. S. A. 100 2003 7503 7508 12788971 PMC164616
  103. Yamazaki F. Kim H.H. Lau P. Hwang C.K. Iuvone P.M. Klein D. Clokie S.J. pY RNA1-s2: a highly retina-enriched small RNA that selectively binds to Matrin 3 (Matr3) PLoS ONE 9 2014 e88217 24558381 PMC3928194
  104. Zhang A.T. Langley A.R. Christov C.P. Kheir E. Shafee T. Gardiner T.J. Krude T. Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication J. Cell Sci. 124 2011 2058 2069 21610089 PMC3104036

Cited by

Sorted by citations

Authors
Kowalski, M. P., & Krude, T.
Venue
The International Journal of Biochemistry & Cell Biology
Publisher
Elsevier BV
Published
2015-09
Volume
66
Pages
20-29
ISSN
1357-2725
Cited by
217
References
0
Language
en
Funders
  • Cancer Research UK (CRUK)
  • Association for International Cancer Research (AICR)
  • Biotechnology and Biological Sciences Research Council (BBSRC)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review