Protein metalation in biology
Open accessAbstract
Inorganic metals supplement the chemical repertoire of organic molecules, especially proteins. This requires the correct metals to associate with proteins at metalation. Protein mismetalation typically occurs when excesses of unbound metals compete for a binding site ex vivo. However, in biology, excesses of metal-binding sites typically compete for limiting amounts of exchangeable metals. Here, we summarise mechanisms of metal homeostasis that sustain optimal metal availabilities in biology. We describe recent progress to understand metalation by comparing the strength of metal binding to a protein versus the strength of binding to competing sites inside cells.
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Zn2+ and Cu+ have a high affinity for ligands, with small labile pools and no free, fully hydrated ions at equilibrium.
“Zn2+ and Cu+ have a high affinity for ligands, with small labile pools and no free, fully hydrated ions at equilibrium.3,12”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
The Mismetalation section says Cu+ forms exceptionally tight complexes, and the Associative metalation and available metal section describes extensive Zn2+ binding and a negligible source of unbound Zn2+. The paper does not establish that both metals have small labile pools or that neither has any fully hydrated ions at equilibrium; it discusses an extremely low, rather than strictly zero, availability of hydrated Zn2+. (LLM, conf=0.82)
Experimental — accuracy not yet measuredThe metal ions relevant to biology span from highly available, with substantial pools of free ions (K+ and Mg2+), to those that have an average of less than one free ion per bacterial cell (Zn2+ and Cu+).
“The metal ions relevant to biology have properties that span the range from highly available, with substantial pools of free ions (K+ and Mg2+), to those that have an average of less than one free ion per bacterial cell (Zn2+ and Cu+).3,20”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
The section “Intracellular metal availability follows the inverse of the Irving–Williams series” describes a range of free-metal concentrations, and “Associative metalation and available metal” says free Zn²⁺ is so scarce that it is fleetingly available in roughly one cell in a million. Our copy does not establish substantial free K⁺ and Mg²⁺ pools or quantify free Cu⁺ as averaging less than one ion per bacterial cell. No page numbers are available in the indexed copy. (LLM, conf=0.87)
Experimental — accuracy not yet measuredFor Zn2+ and Cu+, the notional free metal pool is less than one atom per cell at equilibrium, and metal mobility relies on ligand exchange chemistry.
“For Zn2+ and Cu+, however, the notional free metal pool is less than one atom per cell at equilibrium, and the mobility of metals relies on ligand exchange chemistry.3,31,32”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
In “Associative metalation and available metal” (page unavailable), the paper says that femtomolar Zn2+ availability corresponds to far less than one atom per E. coli cell volume, and it describes Cu+ transfer by ligand exchange. It does not give a corresponding per-cell calculation for free Cu+, and it presents ligand exchange as a route for metalation rather than establishing that all metal mobility relies on it. (LLM, conf=0.84)
Experimental — accuracy not yet measuredMetalloregulator or riboswitch sensitivity corresponds to a nominal concentration of free aquated ions calculated from the free energy change for the metal binding affinity needed to effect changes in gene expression.
“Their sensitivity corresponds to a nominal concentration of free (aquated) ions (right axis) as calculated from the free energy change (ΔG, left axis) for the metal binding affinity needed to effect changes in gene expression.3”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
Labile cation pools are sensed by metalloregulatory systems and serve to metalate nascent metalloproteins.
“The labile cation pools are sensed by metalloregulatory systems1,219 and serve to metalate nascent metalloproteins.3”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
Metal homeostasis relies on the regulation of import and export processes that help sustain a pool of kinetically labile metal complexes that can be accessed by nascent metalloproteins and to support metal-dependent processes.
“Metal homeostasis relies on the regulation of import and export processes that help sustain a pool of kinetically labile metal complexes that can be accessed by nascent metalloproteins and to support metal-dependent processes.3”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
Metal binding to metalloregulators often affects DNA affinity, and the converse is also true; these effects need to be considered when assessing sensitivity.
“Further, since metal binding to metalloregulators often affects DNA affinity, the converse is also true,26 and these effects need to be considered when assessing sensitivity.3,4”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
Within the complex milieu of the cytosol, the biochemically determined metal sensitivity of metalloregulatory proteins and metal-sensing riboswitches provides a useful proxy for free metal concentrations and defines the biological set-point for specific genetic changes.
“Within the more complex milieu of the cytosol, the biochemically determined metal sensitivity of metalloregulatory proteins and metal-sensing riboswitches provides a useful proxy3,4 and defines the biological set-point for specific genetic changes (Figure 2).4,24”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
Most manganese and iron is bound, but a small free pool is present and contributes to metal acquisition by nascent metalloproteins.
“Most manganese and iron is bound, but a small free pool is present and contributes to metal acquisition by nascent metalloproteins.3”
From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [3]
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Cites
Femtomolar Sensitivity of Metalloregulatory Proteins Controlling Zinc Homeostasis
Outten, C. E., & O'Halloran, A. T. V. (2001) · Science · doi:10.1126/science.1060331 · Cited by 1,489 · see citing works
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Dann, C. E., Wakeman, C. A., Sieling, C. L., Baker, S. C., Irnov, I., & Winkler, W. C. (2007) · Cell · doi:10.1016/j.cell.2007.06.051 · Cited by 386 · see citing works
Copper tolerance in bacteria requires the activation of multiple accessory pathways
Giachino, A., & Waldron, K. J. (2020) · Molecular Microbiology · doi:10.1111/mmi.14522 · Cited by 223 · see citing works
The Atx1-Ccc2 complex is a metal-mediated protein-protein interaction.
Banci, L., Bertini, I., Cantini, F., Felli, I. C., Gonnelli, L., Hadjiliadis, N., Pierattelli, R., Rosato, A., & Voulgaris, P. (2006) · Nature Chemical Biology · doi:10.1038/nchembio797 · Cited by 219 · see citing works
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Lonergan, Z. R., & Skaar, E. P. (2019) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2019.06.010 · Cited by 129 · see citing works
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Metals in Motion: Understanding Labile Metal Pools in Bacteria
Helmann, J. D. (2025) · Biochemistry · doi:10.1021/acs.biochem.4c00726 · Cited by 49 · see citing works
- Authors
- Foster, A. W., Young, T. R., Chivers, P. T., & Robinson, N. J.
- Affiliations
- Durham University (GB)
- Corresponding author
- Robinson, Nigel J.
- Venue
- Current Opinion in Chemical Biology
- Publisher
- Elsevier BV
- Published
- 2022-02
- Volume
- 66
- Pages
- 102095
- ISSN
- 1367-5931 (ISSN-L)
- PMC
- PMC8867077
- OpenAlex
- W3211677758
- Cited by
- 90
- References
- 6
- Citations by year
- 2026: 17 · 2025: 14 · 2024: 25 · 2023: 17 · 2022: 16
- FWCI
- 1.89
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Current Opinion in Chemical Biology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Durham Research Online (Durham University) (acceptedVersion, other-oa)
- Durham Research Online (Durham University) (submittedVersion, cc-by)
- Funders
- Biotechnology and Biological Sciences Research Council (BB/V006002/1, BB/S009787/1, BB/R002118/1)
- Topics
- Health Sciences › Nursing › Nutrition and Dietetics › Trace Elements in Health
- Physical Sciences › Environmental Science › Health, Toxicology and Mutagenesis › Heavy Metal Exposure and Toxicity
- Health Sciences › Medicine › Hematology › Iron Metabolism and Disorders
- Keywords
- metal homeostasis, metal binding affinity, metal binding sites, metal competition, exchangeable metals, metalloproteins
- MeSH terms
- Biology, Cobalt, Copper, Manganese, Metals, Zinc
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