Cited by 203Protein Kinase Regulation and GTPase SignalingCellular transport and secretionPI3K/AKT/mTOR signaling in cancer

Novel roles of phosphoinositides in signaling, lipid transport, and disease

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Hammond, Gerald R.V., Burke, John E.·2020·Current Opinion in Cell Biology

Abstract

Phosphoinositides (PPIns) are lipid signaling molecules that act as master regulators of cellular signaling. Recent studies have revealed novel roles of PPIns in myriad cellular processes and multiple human diseases mediated by misregulation of PPIn signaling. This review will present a timely summary of recent discoveries in PPIn biology, specifically their role in regulating unexpected signaling pathways, modification of signaling outcomes downstream of integral membrane proteins, and novel roles in lipid transport. This has revealed new roles of PPIns in regulating membrane trafficking, immunity, cell polarity, and response to extracellular signals. A specific focus will be on novel opportunities to target PPIn metabolism for treatment of human diseases, including cancer, pathogen infection, developmental disorders, and immune disorders.

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Crossref · 10.1016/j.ceb.2019.12.007

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  • PI(4,5)P2 is a substrate for PLC and PI3K.

    “PI(4,5)P2 is a substrate for two signalling pathways.”

    From Phosphatidylinositol(4,5)bisphosphate: diverse functions at the plasma membrane (2020) · cites this paper as [15]

    The Introduction’s lipid-transfer-proteins section says PI(4,5)P2 is presented to PLCβ3 for hydrolysis, supporting the PLC part. The passages on PI3K discuss its role in disease but do not say that PI(4,5)P2 is its substrate, so the second pathway is not established by our copy. No page numbers are provided. (LLM, conf=0.84)

    Experimental — accuracy not yet measured
  • PLC hydrolysis of PI(4,5)P2 generates IP3 and DAG.

    “Phospholipase C (PLC) leads to the generation of two second messengers, inositol(1,4,5)trisphosphate (I(1,4,5)P3), known trigger for mobilising Ca2+ from endoplasmic reticulum (ER) stores and diacylglycerol (DAG), an activator for protein kinase C (PKC).”

    From Phosphatidylinositol(4,5)bisphosphate: diverse functions at the plasma membrane (2020) · cites this paper as [15]

    The Introduction’s lipid-transfer-proteins section says that PLCβ3 hydrolyzes PI(4,5)P2, supporting the substrate-and-enzyme part of the claim. Our copy does not state that this produces IP3 and DAG, or describe the cited sentence’s downstream calcium and PKC effects; the relevant passages have no page numbers. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • PI3K generates PI(3,4,5)P3, a lipid with wide-ranging functions.

    “The second pathway is phosphoinositide-3-kinase (PI3K) to make PI(3,4,5)P3, a lipid with wide-ranging functions.”

    From Phosphatidylinositol(4,5)bisphosphate: diverse functions at the plasma membrane (2020) · cites this paper as [15]

    The Introduction’s section on pathological phosphoinositide metabolism describes PI3K signaling in cancer, immunodeficiencies, growth disorders, and insulin signaling, supporting the broad point that the pathway has wide-ranging roles. However, the passages in our copy do not state that PI3K generates PI(3,4,5)P3 or specifically attribute those functions to that lipid (page unavailable). (LLM, conf=0.77)

    Experimental — accuracy not yet measured
  • PIP2 plays a crucial role in regulating actin polymerisation, endocytosis, exocytosis, ion channels and G-protein-coupled receptors.

    “PIP2 plays a crucial role in regulating a number of cellular processes or molecules, including actin polymerisation, endocytosis, exocytosis, ion channels and G-protein-coupled receptors [78, 79].”

    From TREM2/PLCγ2 signalling in immune cells: function, structural insight, and potential therapeutic modulation (2021) · cites this paper as [78]

    The Introduction section on integral membrane protein signaling identifies PI(4,5)P2 as a key regulator of ion-channel opening and describes its effects on GPCR signaling. It also says GPCR endocytosis is proposed to require phosphoinositide binding, but does not specifically establish a PIP2 role there. Searches of our copy for actin and exocytosis found no support for those parts of the list; page numbers were not available in the indexed passages. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • IP3 mobilises Ca2+ from ER stores.

    “Phospholipase C (PLC) leads to the generation of two second messengers, inositol(1,4,5)trisphosphate (I(1,4,5)P3), known trigger for mobilising Ca2+ from endoplasmic reticulum (ER) stores and diacylglycerol (DAG), an activator for protein kinase C (PKC).”

    From Phosphatidylinositol(4,5)bisphosphate: diverse functions at the plasma membrane (2020) · cites this paper as [15]

    The Introduction section on integral membrane protein signaling says that GPCRs activate PLC and deplete PI(4,5)P2, but it does not say that IP3 mobilizes Ca2+ from ER stores. Searches for IP3, inositol trisphosphate, and ER calcium release found no passage addressing that claim in our copy. (LLM, conf=0.74)

    Experimental — accuracy not yet measured

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  1. [1]Balla T: Phosphoinositides: tiny lipids with giant impact on cell regulation. Physiol. Rev. 2013, 93: 1019– 1137. 23899561 PMC3962547
  2. [2]Goncalves MD, Cantley LC: Phosphatidylinositol 3-Kinase, Growth Disorders, and Cancer. N. Engl. J. Med. 2018, 379: 2052– 2062. 30462943 * An excellent review on the involvement of PI3Ks in pathological conditions, and novel therapeutic strategies to target them in disease,
  3. [4]Behjati S, Tarpey PS, Sheldon H, Martincorena I, Van Loo P, Gundem G, Wedge DC, Ramakrishna M, Cooke SL, Pillay N,: Recurrent PTPRB and PLCG1 mutations in angiosarcoma. Nat. Genet. 2014, 46: 376– 379. 24633157 PMC4032873
  4. [5]Ketel K, Krauss M, Nicot A-S, Puchkov D, Wieffer M, Müller R, Subramanian D, Schultz C, Laporte J, Haucke V: A phosphoinositide conversion mechanism for exit from endosomes. Nature 2016, 529: 408– 412. 26760201
  5. [6]Rahajeng J, Kuna RS, Makowski SL, Tran TTT, Buschman MD, Li S, Cheng N, Ng MM, Field SJ: Efficient Golgi Forward Trafficking Requires GOLPH3-Driven, PI4PDependent Membrane Curvature. Developmental Cell 2019, 50: 573– 585. e5. 31231041 PMC7583631
  6. [7]Dickson EJ, Hille B: Understanding phosphoinositides: rare, dynamic, and essential membrane phospholipids. Biochem. J. 2019, 476: 1– 23. 30617162 PMC6342281
  7. [8]Fiume R, Faenza I, Sheth B, Poli A, Vidalle MC, Mazzetti C, Abdul SH, Campagnoli F, Fabbrini M, Kimber ST,: Nuclear Phosphoinositides: Their Regulation and Roles in Nuclear Functions. Int J Mol Sci 2019, 20: 2991. PMC6627530 31248120
  8. [9]Pemberton JG, Balla T: Polyphosphoinositide-Binding Domains: Insights from Peripheral Membrane and Lipid-Transfer Proteins. Adv. Exp. Med. Biol. 2018, 287: 733– 61.
  9. [10]Lemmon M: Membrane recognition by phospholipid-binding domains. Nat. Rev. Mol. Cell Biol. 2008, 9: 99– 111. 18216767
  10. [11]Amatya N, Wales TE, Kwon A, Yeung W, Joseph RE, Fulton DB, Kannan N, Engen JR, Andreotti AH: Lipid-targeting pleckstrin homology domain turns its autoinhibitory face toward the TEC kinases. Proc. Natl. Acad. Sci. U.S.A. 2019, 116: 21539– 21544. 31591208 PMC6815127
  11. [12]Joseph RE, Wales TE, Fulton DB, Engen JR, Andreotti AH: Achieving a Graded Immune Response: BTK Adopts a Range of Active/Inactive Conformations Dictated by Multiple Interdomain Contacts. Structure 2017, 25: 1481– 1494. e4. 28867612 PMC5629114
  12. [13]Lučić I, Rathinaswamy MK, Truebestein L, Hamelin DJ, Burke JE, Leonard TA: Conformational sampling of membranes by Akt controls its activation and inactivation. Proc. Natl. Acad. Sci. U.S.A. 2018, 115: E3940– E3949. 29632185 PMC5924885
  13. [14]Chandra M, Chin YK-Y, Mas C, Feathers JR, Paul B, Datta S, Chen K-E, Jia X, Yang Z, Norwood SJ,: Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities. Nat Commun 2019, 10: 1528. 30948714 PMC6449406 ** This manuscript provides an excellent blueprint to understand how putative lipid binding domains interact with PPIn containing membranes. Using a combined biochemical, biophysical, and cellular approach they classified the interaction of 39 of the 49 PX domains in the human genome, revealing a diversity of membrane binding patterns.
  14. [15]Lenoir M, Ustunel C, Rajesh S, Kaur J, Moreau D, Gruenberg J, Overduin M: Phosphorylation of conserved phosphoinositide binding pocket regulates sorting nexin membrane targeting. Nat Commun 2018, 9: 993. 29520003 PMC5843628
  15. [16]Li X, Edwards M, Swaney KF, Singh N, Bhattacharya S, Borleis J, Long Y, Iglesias PA, Chen J, Devreotes PN: Mutually inhibitory Ras-PI(3,4)P2 feedback loops mediate cell migration. Proc. Natl. Acad. Sci. U.S.A. 2018, 115: E9125– E9134. 30194235 PMC6166812
  16. [17]Chen J, Chen ZJ: PtdIns4P on dispersed trans-Golgi network mediates NLRP3 inflammasome activation. Nature 2018, 564: 71– 76. 30487600 PMC9402428 * This study intriguingly finds a novel role of PI4P in mediating NLRP3 inflammasome activation. Importantly this study not only showed binding to PI4P in vitro, but showed that decreasing Golgi PI4P using a Rapamycin inducible system decreases inflammasome localization and activation" xlink:type="simple">* This study intriguingly finds a novel role of PI4P in mediating NLRP3 inflammasome activation. Importantly this study not only showed binding to PI4P in vitro, but showed that decreasing Golgi PI4P using a Rapamycin inducible system decreases inflammasome localization and activation.
  17. [18]Barnett KC, Coronas-Serna JM, Zhou W, Ernandes MJ, Cao A, Kranzusch PJ, Kagan JC: Phosphoinositide Interactions Position cGAS at the Plasma Membrane to Ensure Efficient Distinction between Self- and Viral DNA. Cell 2019, 176: 1432– 1446. e11. 30827685 PMC6697112
  18. [19]Dudley LJ, Cabodevilla AG, Makar AN, Sztacho M, Michelberger T, Marsh JA, Houston DR, Martens S, Jiang X, Gammoh N: Intrinsic lipid binding activity of ATG16L1 supports efficient membrane anchoring and autophagy. EMBO J. 2019, 38: e100554. PMC6484409 30936093
  19. [20]Hilgemann DW, Ball R: Regulation of cardiac Na+,Ca2+ exchange and KATP potassium channels by PIP2. Science 1996, 273: 956– 959. 8688080
  20. [21]Huang CL, Feng S, Hilgemann DW: Direct activation of inward rectifier potassium channels by PIP2 and its stabilization by Gbetagamma. Nature 1998, 391: 803– 806. 9486652
  21. [22]Hansen SB, Tao X, MacKinnon R: Structural basis of PIP2 activation of the classical inward rectifier K+ channel Kir2.2. Nature 2011, 477: 495– 498. 21874019 PMC3324908
  22. [23]Fine M, Schmiege P, Li X: Structural basis for PtdInsP2-mediated human TRPML1 regulation. Nat Commun 2018, 9: 4192. 30305615 PMC6180102
  23. [24]Harraz OF, Longden TA, Dabertrand F, Hill-Eubanks D, Nelson MT: Endothelial GqPCR activity controls capillary electrical signaling and brain blood flow through PIP2 depletion. Proc. Natl. Acad. Sci. U.S.A. 2018, 115: E3569– E3577. 29581272 PMC5899484
  24. [25]Harraz OF, Longden TA, Hill-Eubanks D, Nelson MT: PIP2 depletion promotes TRPV4 channel activity in mouse brain capillary endothelial cells. Elife 2018, 7: 351. PMC6117155 30084828
  25. [26]Liu Y, LoCaste CE, Liu W, Poltash ML, Russell DH, Laganowsky A: Selective binding of a toxin and phosphatidylinositides to a mammalian potassium channel. Nat Commun 2019, 10: 1352. 30902995 PMC6430785
  26. [27]Yen H-Y, Hoi KK, Liko I, Hedger G, Horrell MR, Song W, Wu D, Heine P, Warne T, Lee Y,: PtdIns(4,5)P2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling. Nature 2018, 559: 423– 427. 29995853 PMC6059376 ** This study shows the critical tole of PI(4,5)P2 in regulating the active conformational state of GPCRs, and promotes coupling to G-proteins. Importantly this study demonstrated that binding of PS did not promote G-protein coupling, and highlights the importance of specific PPIn binding in GPCR regulation.
  27. [28]Garcia-Alai MM, Heidemann J, Skruzny M, Gieras A, Mertens HDT, Svergun DI, Kaksonen M, Uetrecht C, Meijers R: Epsin and Sla2 form assemblies through phospholipid interfaces. Nat Commun 2018, 9: 328. 29362354 PMC5780493
  28. [29]Timcenko M, Lyons JA, Januliene D, Ulstrup JJ, Dieudonné T, Montigny C, Ash M-R, Karlsen JL, Boesen T, Kühlbrandt W,: Structure and autoregulation of a P4ATPase lipid flippase. Nature 2019, 571: 366– 370. 31243363 ** This study provides the first molecular insight into how PI4P binding can regulate the activity of a lipid flippase. By comparing inactive apo states, and a fully activated form where the inhibitory c-terminus is removed with PI4P present, the authors can map the full molecular details of how the flippase can be activated.
  29. [30]Laverty D, Desai R, Uchański T, Masiulis S, Stec WJ, Malinauskas T, Zivanov J, Pardon E, Steyaert J, Miller KW,: Cryo-EM structure of the human α1β3γ2 GABAA receptor in a lipid bilayer. Nature 2019, 565: 516– 520. 30602789 PMC6364807
  30. [31]Yan R, Qian H, Lukmantara I, Gao M, Du X, Yan N, Yang H: Human SEIPIN Binds Anionic Phospholipids. Developmental Cell 2018, 47: 248– 256. e4. 30293840
  31. [32]She J, Guo J, Chen Q, Zeng W, Jiang Y, Bai X-C: Structural insights into the voltage and phospholipid activation of the mammalian TPC1 channel. Nature 2018, 556: 130– 134. 29562233 PMC5886804
  32. [33]Hirschi M, Herzik MA, Wie J, Suo Y, Borschel WF, Ren D, Lander GC, Lee S-Y: Cryoelectron microscopy structure of the lysosomal calcium-permeable channel TRPML3. Nature 2017, 550: 411– 414. 29019979 PMC5762132
  33. [34]Chen Q, She J, Zeng W, Guo J, Xu H, Bai X-C, Jiang Y: Structure of mammalian endolysosomal TRPML1 channel in nanodiscs. Nature 2017, 550: 415– 418. 29019981 PMC5901962
  34. [35]She J, Zeng W, Guo J, Chen Q, Bai X-C, Jiang Y: Structural mechanisms of phospholipid activation of the human TPC2 channel. Elife 2019, 8: 814. PMC6424560 30860481 * This study reveals the molecular basis for how TPC2 ion channels can be allosterically modulated by PI(3,5)P2 binding to mediate channel opening. Comparison to the apo state reveals the specific reorientation of amino acids by PI3,5P2 binding to mediate channel opening.
  35. [36]Hughes TET, Pumroy RA, Yazici AT, Kasimova MA, Fluck EC, Huynh KW, Samanta A, Molugu SK, Zhou ZH, Carnevale V,: Structural insights on TRPV5 gating by endogenous modulators. Nat Commun 2018, 9: 4198. 30305626 PMC6179994
  36. [37]Chavent M, Karia D, Kalli AC, Domański J, Duncan AL, Hedger G, Stansfeld PJ, Seiradake E, Jones EY, Sansom MSP: Interactions of the EphA2 Kinase Domain with PIPs in Membranes: Implications for Receptor Function. 2018, 26: 1025– 1034. e2. PMC6039763 29887500
  37. [38]Yu K, Jiang T, Cui Y, Tajkhorshid E, Hartzell HC: A network of phosphatidylinositol 4,5-bisphosphate binding sites regulates gating of the Ca2+-activated Cl- channel ANO1 (TMEM16A). Proc. Natl. Acad. Sci. U.S.A. 2019, 116: 19952– 19962. 31515451 PMC6778221
  38. [39]Le SC, Jia Z, Chen J, Yang H: Molecular basis of PIP2-dependent regulation of the Ca2+-activated chloride channel TMEM16A. Nat Commun 2019, 10: 3769– 12. 31434906 PMC6704070
  39. [40]Song W, Yen H-Y, Robinson CV, Sansom MSP: State-dependent Lipid Interactions with the A2a Receptor Revealed by MD Simulations Using In Vivo-Mimetic Membranes. Structure 2019, 27: 392– 403. e3. 30581046 PMC7031699
  40. [41]Robinson CV, Rohacs T, Hansen SB: Tools for Understanding Nanoscale Lipid Regulation of Ion Channels. Trends in Biochemical Sciences 2019, doi: 10.1016/j.tibs.2019.04.001. PMC6729126 31060927 · DOI · Paper page
  41. [42]Hammond GRV, Takasuga S, Sasaki T, Balla T: The ML1Nx2 Phosphatidylinositol 3,5-Bisphosphate Probe Shows Poor Selectivity in Cells. PLoS ONE 2015, 10: e0139957. PMC4604148 26460749
  42. [43]Dawaliby R, Trubbia C, Delporte C, Masureel M, Van Antwerpen P, Kobilka BK, Govaerts C: Allosteric regulation of G protein-coupled receptor activity by phospholipids. Nature Chemical Biology 2016, 12: 35– 39. 26571351 PMC4718399
  43. [44]Gupta K, Donlan JAC, Hopper JTS, Uzdavinys P, Landreh M, Struwe WB, Drew D, Baldwin AJ, Stansfeld PJ, Robinson CV: The role of interfacial lipids in stabilizing membrane protein oligomers. Nature 2017, 541: 421– 424. 28077870 PMC5501331
  44. [46]Komolov KE, Du Y, Duc NM, Betz RM, Rodrigues JPGLM, Leib RD, Patra D, Skiniotis G, Adams CM, Dror RO,: Structural and Functional Analysis of a β2-Adrenergic Receptor Complex with GRK5. Cell 2017, 169: 407– 421. e16. 28431242 PMC5526774 * This study using an integrative structural biology approach provides molecular insight into how GRKs interact with and phosphorylate GPCRs. Intriguingly, there is a very strong dependence for GRK interaction driven by PI(4,5)P2, which together with ref. 25 reveals important insight into how PPin may play a key role in regulating multiple aspects of GPCR regulation.
  45. [47]Gaidarov I, Krupnick JG, Falck JR, Benovic JL, Keen JH: Arrestin function in G protein-coupled receptor endocytosis requires phosphoinositide binding. EMBO J. 1999, 18: 871– 881. 10022830 PMC1171180
  46. [48]Eichel K, Jullié D, Barsi-Rhyne B, Latorraca NR, Masureel M, Sibarita J-B, Dror RO, Zastrow von M: Catalytic activation of β-arrestin by GPCRs. Nature 2018, 557: 381– 386. 29720660 PMC6058965
  47. [49]Vivas O, Tiscione SA, Dixon RE, Ory DS, Dickson EJ: Niemann-Pick Type C Disease Reveals a Link between Lysosomal Cholesterol and PtdIns(4,5)P2 That Regulates Neuronal Excitability. Cell Rep 2019, 27: 2636– 2648. e4. 31141688 PMC6553496
  48. [50]Traynor-Kaplan A, Kruse M, Dickson EJ, Dai G, Vivas O, Yu H, Whittington D, Hille B: Fatty-acyl chain profiles of cellular phosphoinositides. Biochim Biophys Acta Mol Cell Biol Lipids 2017, 1862: 513– 522. 28189644 PMC5392126
  49. [51]Rohács T, Chen J, Prestwich GD, Logothetis DE: Distinct specificities of inwardly rectifying K(+) channels for phosphoinositides. J. Biol. Chem. 1999, 274: 36065– 36072. 10593888
  50. [52]Chung J, Torta F, Masai K, Lucast L, Czapla H, Tanner LB, Narayanaswamy P, Wenk MR, Nakatsu F, De Camilli P: INTRACELLULAR TRANSPORT. PI4P/phosphatidylserine countertransport at ORP5- and ORP8-mediated ERplasma membrane contacts. Science 2015, 349: 428– 432. 26206935 PMC4638224
  51. [53]Mesmin B, Bigay J, Moser von Filseck J, Lacas-Gervais S, Drin G, Antonny B: A fourstep cycle driven by PI(4)P hydrolysis directs sterol/PI(4)P exchange by the ERGolgi tether OSBP. Cell 2013, 155: 830– 843. 24209621
  52. [54]Mesmin B, Bigay J, Polidori J, Jamecna D, Lacas-Gervais S, Antonny B: Sterol transfer, PI4P consumption, and control of membrane lipid order by endogenous OSBP. EMBO J. 2017, 36: 3156– 3174. 28978670 PMC5666618
  53. [55]Sohn M, Korzeniowski M, Zewe JP, Wills RC, Hammond GRV, Humpolickova J, Vrzal L, Chalupská D, Veverka V, Fairn GD,: PI(4,5)P2 controls plasma membrane PI4P and PS levels via ORP5/8 recruitment to ER-PM contact sites. J. Cell Biol. 2018, 217: 1797– 1813. 29472386 PMC5940310 ** This paper demonstrates a homeostatic mechanism to prioritize essential PI(4,5)P2 functions above PI4P-driven lipid transport. Essentially, PI4P-driven PS transfer to the PM only occurs when sufficient PI(4,5)P2 is present to localize the transfer proteins.
  54. [56]Ghai R, Du X, Wang H, Dong J, Ferguson C, Brown AJ, Parton RG, Wu J-W, Yang H: ORP5 and ORP8 bind phosphatidylinositol-4, 5-biphosphate (PtdIns(4,5)P 2) and regulate its level at the plasma membrane. Nat Commun 2017, 8: 757– 14. 28970484 PMC5624964
  55. [57]Wang H, Ma Q, Qi Y, Dong J, Du X, Rae J, Wang J, Wu W-F, Brown AJ, Parton RG,: ORP2 Delivers Cholesterol to the Plasma Membrane in Exchange for Phosphatidylinositol 4, 5-Bisphosphate (PI(4,5)P2). Mol. Cell 2019, 73: 458– 473. e7. 30581148
  56. [58]Sandhu J, Li S, Fairall L, Pfisterer SG, Gurnett JE, Xiao X, Weston TA, Vashi D, Ferrari A, Orozco JL,: Aster Proteins Facilitate Nonvesicular Plasma Membrane to ER Cholesterol Transport in Mammalian Cells. Cell 2018, 175: 514– 529. e20. 30220461 PMC6469685
  57. [59]Besprozvannaya M, Dickson E, Li H, Ginburg KS, Bers DM, Auwerx J, Nunnari J: GRAM domain proteins specialize functionally distinct ER-PM contact sites in human cells. Elife 2018, 7: 1391. PMC5823543 29469807
  58. [60]de Saint-Jean M, Delfosse V, Douguet D, Chicanne G, Payrastre B, Bourguet W, Antonny B, Drin G: Osh4p exchanges sterols for phosphatidylinositol 4-phosphate between lipid bilayers. J. Cell Biol. 2011, 195: 965– 978. 22162133 PMC3241724
  59. [61]Wang Y, Mousley CJ, Lete MG, Bankaitis VA: An equal opportunity collaboration between lipid metabolism and proteins in the control of membrane trafficking in the trans-Golgi and endosomal systems. Curr. Opin. Cell Biol. 2019, 59: 58– 72. 31039522 PMC7198063
  60. [62]Zhong W, Xu M, Li C, Zhu B, Cao X, Li D, Chen H, Hu C, Li R, Luo C,: ORP4L Extracts and Presents PIP2 from Plasma Membrane for PLCβ3 Catalysis: Targeting It Eradicates Leukemia Stem Cells. Cell Rep 2019, 26: 2166– 2177. e9. 30784597 ** An evocative paper suggesting that rather than transporting lipids, this lipid transfer protein in cells presents its PPIn ligand to phospholipases C, thus facilitating signaling as opposed to non-vesciular lipid transport.
  61. [63]Nishimura T, Gecht M, Covino R, Hummer G, Surma MA, Klose C, Arai H, Kono N, Stefan CJ: Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P2 Synthesis. Mol. Cell 2019, 75: 1043– 1057. e8. 31402097 PMC6739424
  62. [64]Hansen SD, Huang WYC, Lee YK, Bieling P, Christensen SM, Groves JT: Stochastic geometry sensing and polarization in a lipid kinase-phosphatase competitive reaction. Proc. Natl. Acad. Sci. U.S.A. 2019, 116: 15013– 15022. 31278151 PMC6660746
  63. [65]Zewe JP, Wills RC, Sangappa S, Goulden BD, Hammond GR: SAC1 degrades its lipid substrate PtdIns4P in the endoplasmic reticulum to maintain a steep chemical gradient with donor membranes. Elife 2018, 7: 1019. PMC5829913 29461204 * This paper presents evidence that PI4P dephosphorylation occurs mainly in the ER where the major PI4P phosphatase, SAC1, is present. Furthermore, it is demonstrated that in cells, the enzyme cannot “reach” across the gap between ER and PM at contact sites to be active. This implies PI4P breakdown occurs exclusively in the realm of lipid transport.
  64. [66]Venditti R, Masone MC, Rega LR, Di Tullio G, Santoro M, Polishchuk E, Serrano IC, Olkkonen VM, Harada A, Medina DL,: The activity of Sac1 across ER-TGN contact sites requires the four-phosphate-adaptor-protein-1. J. Cell Biol. 2019, 218: 783– 797. 30659099 PMC6400556 * However, this paper suggests that at ER-TGN contact sites, the ER protein VAPA/B and TGN protein FAPP1 may orientate ER-localized SAC1 to degrade PI4P in TGN membranes. This reveals that specific membrane contact sites may allow for trans activity of lipid phosphatases.
  65. [67]Dong R, Zhu T, Benedetti L, Gowrishankar S, Deng H, Cai Y, Wang X, Shen K, De Camilli P: The inositol 5-phosphatase INPP5K participates in the fine control of ER organization. J. Cell Biol. 2018, 217: 3577– 3592. 30087126 PMC6168264
  66. [68]Osborn DPS, Pond HL, Mazaheri N, Dejardin J, Munn CJ, Mushref K, Cauley ES, Moroni I, Pasanisi MB, Sellars EA,: Mutations in INPP5K Cause a Form of Congenital Muscular Dystrophy Overlapping Marinesco-Sjögren Syndrome and Dystroglycanopathy. Am. J. Hum. Genet. 2017, 100: 537– 545. 28190459 PMC5339112
  67. [69]Wiessner M, Roos A, Munn CJ, Viswanathan R, Whyte T, Cox D, Schoser B, Sewry C, Roper H, Phadke R,: Mutations in INPP5K, Encoding a Phosphoinositide 5Phosphatase, Cause Congenital Muscular Dystrophy with Cataracts and Mild Cognitive Impairment. Am. J. Hum. Genet. 2017, 100: 523– 536. 28190456 PMC5339217
  68. [70]André F, Ciruelos E, Rubovszky G, Campone M, Loibl S, Rugo HS, Iwata H, Conte P, Mayer IA, Kaufman B,: Alpelisib for PIK3CA-Mutated, Hormone ReceptorPositive Advanced Breast Cancer. N. Engl. J. Med. 2019, 380: 1929– 1940. 31091374 * This study describes the first successful clinical application of a PI3K inhibitor towards a solid tumor.
  69. [71]Flinn IW, O’Brien S, Kahl B, Patel M, Oki Y, Foss FF, Porcu P, Jones J, Burger JA, Jain N,: Duvelisib, a novel oral dual inhibitor of PI3K-δ,γ, is clinically active in advanced hematologic malignancies. Blood 2018, 131: 877– 887. 29191916 PMC6033052
  70. [72]Gopal AK, Kahl BS, de Vos S, Wagner-Johnston ND, Schuster SJ, Jurczak WJ, Flinn IW, Flowers CR, Martin P, Viardot A,: PI3Kδ inhibition by idelalisib in patients with relapsed indolent lymphoma. N. Engl. J. Med. 2014, 370: 1008– 1018. 24450858 PMC4039496
  71. [73]Dreyling M, Santoro A, Mollica L, Leppä S, Follows GA, Lenz G, Kim WS, Nagler A, Panayiotidis P, Demeter J,: Phosphatidylinositol 3-Kinase Inhibition by Copanlisib in Relapsed or Refractory Indolent Lymphoma. J. Clin. Oncol. 2017, 35: 3898– 3905. 28976790
  72. [75]Vasan N, Razavi P, Johnson JL, Shao H, Shah H, Antoine A, Ladewig E, Gorelick A, Lin T-Y, Toska E,: Double PIK3CA mutations in cis increase oncogenicity and sensitivity to PI3Kα inhibitors. Science 2019, 366: 714– 723. 31699932 PMC7173400 ** This manuscript describes the occurrence of double mutations on a single allele of PIK3CA in cancer, leading to increased kinase activity and PI3K inhibitor sensitivity. This supports the hypothesis of ref. 76, which showed that different mutations in PIK3CA lead to activation by unique mechanisms, suggesting that they could act synergistically.
  73. [77]Venot Q, Blanc T, Rabia SH, Berteloot L, Ladraa S, Duong J-P, Blanc E, Johnson SC, Hoguin C, Boccara O,: Targeted therapy in patients with PIK3CA-related overgrowth syndrome. Nature 2018, 13: 195. PMC7610773 29899452 * Along with their role in cancer progression, PI3K mutations also mediate PI3K related overgrowth syndromes (PROS), with this study showing clear efficacy of using of PIK3CA specific inhibitor in patients.
  74. [78]Lucas CL, Chandra A, Nejentsev S, Condliffe AM, Okkenhaug K: PI3Kδ and primary immunodeficiencies. Nat. Rev. Immunol. 2016, 16: 702– 714. 27616589 PMC5291318
  75. [79]Rao VK, Webster S, Dalm VASH, Sediva A, van Hagen, Holland S, Rosenzweig SD, Christ AD, Sloth B, Cabanski M,: Effective “Activated PI3Kδ Syndrome”targeted therapy with the PI3Kδ inhibitor leniolisib. Blood 2017, doi: 10.1182/blood2017-08-801191. PMC5701526 28972011 * Mutation of PIK3CD is a driver of primary immunodeficiencies. This paper shows that targeted therapy using PIK3CD specific inhibitors are showing excellent clinical response in APDS patients. · DOI
  76. [80]Lee Y-R, Chen M, Lee JD, Lin S-Y, Fu T-M, Chen H, Ishikawa T, Chiang S-Y, Katon J, Zhang Y,: Reactivation of PTEN tumor suppressor for cancer treatment through inhibition of a MYC-WWP1 inhibitory pathway. Science 2019, 364: eaau0159. PMC7081834 31097636 * This study identified a novel regulatory mechanism controlling the activity of the lipid phosphatase PTEN, where inhibiting a WWP1 E3 ligase that downregulates PTEN, it is possible to increase the tumor suppressor activity of PTEN. Small molecules found in cruciferous vegetables inhibit WWP1 activity, and provide a new basis for drug design.
  77. [81]Laporte J, Hu LJ, Kretz C, Mandel JL, Kioschis P, Coy JF, Klauck SM, Poustka A, Dahl N: A gene mutated in X-linked myotubular myopathy defines a new putative tyrosine phosphatase family conserved in yeast. Nat. Genet. 1996, 13: 175– 182. 8640223
  78. [82]Sabha N, Volpatti JR, Gonorazky H, Reifler A, Davidson AE, Li X, Eltayeb NM, Dall’Armi C, Di Paolo G, Brooks SV,: PIK3C2B inhibition improves function and prolongs survival in myotubular myopathy animal models. J. Clin. Invest. 2016, 126: 3613– 3625. 27548528 PMC5004942
  79. [83]Maani N, Sabha N, Rezai K, Ramani A, Groom L, Eltayeb N, Mavandadnejad F, Pang A, Russo G, Brudno M,: Tamoxifen therapy in a murine model of myotubular myopathy. Nat Commun 2018, 9: 4849– 16. 30451841 PMC6242823 * This paper describes the exciting and unexpected discovery that the clinically approved estrogen receptor modulator tamoxifen improves symptoms of myotubular myopathy in a mouse model of disease, and reveals a novel therapeutic strategy for MTM patients.
  80. [84]Kato N, Comer E, Sakata-Kato T, Sharma A, Sharma M, Maetani M, Bastien J, Brancucci NM, Bittker JA, Corey V,: Diversity-oriented synthesis yields novel multistage antimalarial inhibitors. Nature 2016, 538: 344– 349. 27602946 PMC5515376
  81. [85]McNamara CW, Lee MCS, Lim CS, Lim SH, Roland J, Nagle A, Simon O, Yeung BKS, Chatterjee AK, McCormack SL,: Targeting Plasmodium PI(4)K to eliminate malaria. Nature 2013, 504: 248– 253. 24284631 PMC3940870
  82. [86]Manjunatha UH, Vinayak S, Zambriski JA, Chao AT, Sy T, Noble CG, Bonamy GMC, Kondreddi RR, Zou B, Gedeck P,: A Cryptosporidium PI(4)K inhibitor is a drug candidate for cryptosporidiosis. Nature 2017, 546: 376– 380. 28562588 PMC5473467
  83. [87]Paquet T, Le Manach C, Cabrera DG, Younis Y, Henrich PP, Abraham TS, Lee MCS, Basak R, Ghidelli-Disse S, Lafuente-Monasterio MJ,: Antimalarial efficacy of MMV390048, an inhibitor of Plasmodium phosphatidylinositol 4-kinase. Sci Transl Med 2017, 9: eaad9735. PMC5731459 28446690
  84. [88]Willett R, Martina JA, Zewe JP, Wills R, Hammond GRV, Puertollano R: TFEB regulates lysosomal positioning by modulating TMEM55B expression and JIP4 recruitment to lysosomes. Nat Commun 2017, 8: 1580– 17. 29146937 PMC5691037
  85. [90]Wang H, Lo W-T, Haucke V: Phosphoinositide switches in endocytosis and in the endolysosomal system. Curr. Opin. Cell Biol. 2019, 59: 50– 57. 31029845
  86. [91]Bai L, Kovach A, You Q, Hsu H-C, Zhao G, Li H: Autoinhibition and activation mechanisms of the eukaryotic lipid flippase Drs2p-Cdc50p. Nat Commun 2019, 10: 4142– 10. 31515475 PMC6742660

Cited by

Sorted by citations

Authors
Hammond, G. R. V., & Burke, J. E.
Affiliations
  • University of Pittsburgh (US)
  • University of Victoria (CA)
Corresponding author
  • Hammond, Gerald R.V.
  • Burke, John E.
Venue
Current Opinion in Cell Biology
Publisher
Elsevier BV
Published
2020-04
Volume
63
Pages
57-67
ISSN
0955-0674 (ISSN-L)
OpenAlex
W3001602420
Cited by
203
References
6
Citations by year
2026: 22 · 2025: 39 · 2024: 38 · 2023: 37 · 2022: 34 · 2021: 19 · 2020: 12 · 2019: 2
FWCI
2.46
Type
journal article
Language
en
Open access
Locations
  • Current Opinion in Cell Biology (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
  • National Institutes of Health (1R35GM119412-01)
  • Natural Sciences and Engineering Research Council of Canada (2014-05218)
  • Canadian Institutes of Health Research (CRN-142393)
  • Michael Smith Foundation for Health Research (17686)
  • Cancer Research Society (CRS 24368)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
Keywords
phosphoinositides, lipid signaling, lipid transport, membrane trafficking, cell polarity, immunity, cancer, pathogen infection, developmental disorders, immune disorders, therapeutic target
MeSH terms
Biological Transport, Humans, Phosphatidylinositols, Signal Transduction

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