Cited by 971Genomics and Chromatin DynamicsPlant Molecular Biology ResearchNuclear Structure and Function

H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis

Open access
Kumar, S. Vinod, Wigge, Philip A.·2010·Cell

Abstract

Plants are highly sensitive to temperature and can perceive a difference of as little as 1 degrees C. How temperature is sensed and integrated in development is unknown. In a forward genetic screen in Arabidopsis, we have found that nucleosomes containing the alternative histone H2A.Z are essential to perceiving ambient temperature correctly. Genotypes deficient in incorporating H2A.Z into nucleosomes phenocopy warm grown plants, and show a striking constitutive warm temperature transcriptome. We show that nucleosomes containing H2A.Z display distinct responses to temperature in vivo, independently of transcription. Using purified nucleosomes, we are able to show that H2A.Z confers distinct DNA-unwrapping properties on nucleosomes, indicating a direct mechanism for the perception of temperature through DNA-nucleosome fluctuations. Our results show that H2A.Z-containing nucleosomes provide thermosensory information that is used to coordinate the ambient temperature transcriptome. We observe the same effect in budding yeast, indicating that this is an evolutionarily conserved mechanism.

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  • Arabidopsis thaliana demonstrates that a general mechanism involving the variant histone H2AZ88 mediates part of the short-term adaptation of plants to temperature changes.

    “The plant Arabidopsis thaliana demonstrates that a general mechanism involving the variant histone H2AZ88 mediates part of the short-term adaptation of plants to temperature changes [97].”

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Research works printed but not linked: 24

  1. [1]1. Ausin, I. ∙ Alonso-Blanco, C. ∙ Jarillo, J.A. ... Regulation of flowering time by FVE, a retinoblastoma-associated protein Nat. Genet. 2004; 36:162-166 Crossref Scopus (315) PubMed Google Scholar
  2. [2]2. Balasubramanian, S. ∙ Sureshkumar, S. ∙ Lempe, J. ... Potent induction of Arabidopsis thaliana flowering by elevated growth temperature PLoS Genet. 2006; 2:e106 Crossref Scopus (471) PubMed Google Scholar
  3. [3]3. Blazquez, M.A. ∙ Ahn, J.H. ∙ Weigel, D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana Nat. Genet. 2003; 33:168-171 Crossref Scopus (389) PubMed Google Scholar
  4. [4]4. Boeger, H. ∙ Griesenbeck, J. ∙ Strattan, J.S. ... Nucleosomes unfold completely at a transcriptionally active promoter Mol. Cell. 2003; 11:1587-1598 Full Text Full Text (PDF) Scopus (342) PubMed Google Scholar
  5. [5]5. Boeger, H. ∙ Griesenbeck, J. ∙ Kornberg, R.D. Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription Cell. 2008; 133:716-726 Full Text Full Text (PDF) Scopus (140) PubMed Google Scholar
  6. [6]6. Brand, M. ∙ Rampalli, S. ∙ Chaturvedi, C.P. ... Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography Nat. Protoc. 2008; 3:398-409 Crossref Scopus (79) PubMed Google Scholar
  7. [7]7. Cerdan, P.D. ∙ Chory, J. Regulation of flowering time by light quality Nature. 2003; 423:881-885 Crossref Scopus (422) PubMed Google Scholar
  8. [8]8. Choi, K. ∙ Kim, S. ∙ Kim, S.Y. ... SUPPRESSOR OF FRIGIDA 3 encodes a nuclear ACTIN-RELATED PROTEIN 6 required for floral repression in Arabidopsis Plant Cell. 2005; 17:2647-2660 Crossref Scopus (115) PubMed Google Scholar
  9. [9]9. Creyghton, M.P. ∙ Markoulaki, S. ∙ Levine, S.S. ... H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment Cell. 2008; 135:649-661 Full Text Full Text (PDF) Scopus (270) PubMed Google Scholar
  10. [10]10. Deal, R.B. ∙ Kandasamy, M.K. ∙ McKinney, E.C. ... The nuclear actin-related protein ARP6 is a pleiotropic developmental regulator required for the maintenance of FLOWERING LOCUS C expression and repression of flowering in Arabidopsis Plant Cell. 2005; 17:2633-2646 Crossref Scopus (149) PubMed Google Scholar
  11. [11]11. Deal, R.B. ∙ Topp, C.N. ∙ McKinney, E.C. ... Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z Plant Cell. 2007; 19:74-83 Crossref Scopus (266) PubMed Google Scholar
  12. [12]12. Fan, J.Y. ∙ Gordon, F. ∙ Luger, K. ... The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states Nat. Struct. Biol. 2002; 9:172-176 Crossref Scopus (5) PubMed Google Scholar
  13. [13]13. Fitter, A.H. ∙ Fitter, R.S. Rapid changes in flowering time in British plants Science. 2002; 296:1689-1691 Crossref Scopus (1179) PubMed Google Scholar
  14. [15]15. Gendrel, A.V. ∙ Lippman, Z. ∙ Yordan, C. ... Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1 Science. 2002; 297:1871-1873 Crossref Scopus (373) PubMed Google Scholar
  15. [16]16. Gould, P.D. ∙ Locke, J.C. ∙ Larue, C. ... The molecular basis of temperature compensation in the Arabidopsis circadian clock Plant Cell. 2006; 18:1177-1187 Crossref Scopus (294) PubMed Google Scholar
  16. [17]17. Gray, W.M. ∙ Ostin, A. ∙ Sandberg, G. ... High temperature promotes auxin-mediated hypocotyl elongation in Arabidopsis Proc. Natl. Acad. Sci. USA. 1998; 95:7197-7202 Crossref Scopus (525) PubMed Google Scholar
  17. [18]18. Halliday, K.J. ∙ Salter, M.G. ∙ Thingnaes, E. ... Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integrator FT Plant J. 2003; 33:875-885 Crossref Scopus (267) PubMed Google Scholar
  18. [19]19. Heggie, L. ∙ Halliday, K.J. The highs and lows of plant life: temperature and light interactions in development Int. J. Dev. Biol. 2005; 49:675-687 Crossref Scopus (53) PubMed Google Scholar
  19. [20]20. Hodges, C. ∙ Bintu, L. ∙ Lubkowska, L. ... Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II Science. 2009; 325:626-628 Crossref Scopus (301) PubMed Google Scholar
  20. [21]21. Ishibashi, T. ∙ Dryhurst, D. ∙ Rose, K.L. ... Acetylation of vertebrate H2A.Z and its effect on the structure of the nucleosome Biochemistry. 2009; 48:5007-5017 Crossref Scopus (78) PubMed Google Scholar
  21. [22]22. Kaplan, N. ∙ Moore, I.K. ∙ Fondufe-Mittendorf, Y. ... The DNA-encoded nucleosome organization of a eukaryotic genome Nature. 2009; 458:362-366 Crossref Scopus (954) PubMed Google Scholar
  22. [23]23. Kelly, A.E. ∙ Goulden, M.L. Rapid shifts in plant distribution with recent climate change Proc. Natl. Acad. Sci. USA. 2008; 105:11823-11826 Crossref Scopus (929) PubMed Google Scholar
  23. [24]24. Kim, H.J. ∙ Hyun, Y. ∙ Park, J.Y. ... A genetic link between cold responses and flowering time through FVE in Arabidopsis thaliana Nat. Genet. 2004; 36:167-171 Crossref Scopus (230) PubMed Google Scholar
  24. [25]25. Knezetic, J.A. ∙ Luse, D.S. The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro Cell. 1986; 45:95-104

Cited by

Sorted by citations

Authors
Kumar, S. V., & Wigge, P. A.
Affiliations
John Innes Centre (GB)
Corresponding author
Wigge, Philip A.
Venue
Cell
Publisher
Elsevier BV
Published
2010-01
Volume
140
Issue
1
Pages
136-147
ISSN
0092-8674 (ISSN-L)
OpenAlex
W2152105724
Cited by
971
References
1
Citations by year
2026: 40 · 2025: 53 · 2024: 58 · 2023: 60 · 2022: 60 · 2021: 71 · 2020: 77 · 2019: 64 · 2018: 58 · 2017: 49 · 2016: 62 · 2015: 61 · 2014: 62 · 2013: 59 · 2012: 45
FWCI
18.27
Type
journal article
Language
en
Open access
Locations
  • Cell (publishedVersion)
  • PubMed (publishedVersion)
Funders
Biotechnology and Biological Sciences Research Council (BBS/E/J/00000610)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
Keywords
H2A.Z, nucleosome, thermosensation, thermal sensation, Arabidopsis thaliana, DNA unwrapping, chromatin dynamics, forward genetic screen, Saccharomyces cerevisiae, temperature sensitivity
MeSH terms
Histones, Microfilament Proteins, Nucleosomes, Temperature, Arabidopsis, DNA, Plant, HSP70 Heat-Shock Proteins, Gene Expression Profiling, Arabidopsis Proteins

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