Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

Ingolia, Nicholas T., Lareau, Liana F., Weissman, Jonathan S.·2011·Cell
DOI 10.1016/j.cell.2011.10.002

Cited by (1,002)

Items 301–400 of 1,002

  1. Ribosome collisions trigger cis-acting feedback inhibition of translation initiation
    Szymon Juszkiewicz, Greg Slodkowicz, Zhewang Lin, Paula Freire-Pritchett, Sew‐Yeu Peak‐Chew, Ramanujan S. Hegde · 2020 · eLife
  2. A Human Short Open Reading Frame (sORF)-encoded Polypeptide That Stimulates DNA End Joining
    Sarah A. Slavoff, Jinho Heo, Bogdan Budnik, Leslyn A. Hanakahi, Alan Saghatelian · 2014 · Journal of Biological Chemistry
  3. PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity
    Je‐Hyun Yoon, Supriyo De, Subramanya Srikantan, Kotb Abdelmohsen, Ioannis Grammatikakis, Jiyoung Kim, Kyoung Mi Kim, Ji Heon Noh, Elizabeth J. White, Jennifer L. Martindale et al. · 2014 · Nature Communications
  4. Proteolytic Post-translational Modification of Proteins: Proteomic Tools and Methodology
    Lindsay D. Rogers, Christopher M. Overall · 2013 · Molecular & Cellular Proteomics
  5. Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements
    Max Ferretti, Homa Ghalei, Ethan A Ward, Elizabeth L Potts, Katrin Karbstein · 2017 · Nature Structural & Molecular Biology
  6. Ribosomal stress-surveillance: three pathways is a magic number
    Anna Vind, Aitana Victoria Genzor, Simon Bekker‐Jensen · 2020 · Nucleic Acids Research
  7. The pathogenic mechanism of the Mycobacterium ulcerans virulence factor, mycolactone, depends on blockade of protein translocation into the ER
    Hall, Belinda S., Hill, Kirsti, McKenna, Michael, Ogbechi, Joy, High, Stephen, Willis, Anne E., Simmonds, Rachel E. · 2014 · PLoS Pathogens
  8. De novo annotation and characterization of the translatome with ribosome profiling data
    Zhengtao Xiao, Rongyao Huang, Xudong Xing, Yuling Chen, Haiteng Deng, Xuerui Yang · 2018 · Nucleic Acids Research
  9. Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames
    Peggy Janich, Alaaddin Bulak Arpat, Violeta Castelo-Szekely, Maykel Lopes, David Gatfield · 2015 · Genome Research
  10. Translational control by 3'-UTR-binding proteins
    E. Szostak, Fátima Gebauer · 2012 · Briefings in Functional Genomics
  11. Global mRNA polarization regulates translation efficiency in the intestinal epithelium
    Andreas E. Moor, Matan Golan, Efi E. Massasa, Doron Lemze, Tomer Weizman, Rom Shenhav, Shaked Baydatch, Orel Mizrahi, Roni Winkler, Ofra Golani et al. · 2017 · Science
  12. Nascent peptides that block protein synthesis in bacteria
    Christopher J. Woolstenhulme, Shankar Prasad Parajuli, David Healey, Diana P. Valverde, Erling N. Petersen, Agata L. Starosta, Nicholas R. Guydosh, William Evan Johnson, Daniel N. Wilson, Allen R. Buskirk · 2013 · Proceedings of the National Academy of Sciences
  13. Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling
    Fuad Mohammad, Christopher J. Woolstenhulme, Rachel Green, Allen R. Buskirk · 2016 · Cell Reports
  14. The regulatory potential of upstream open reading frames in eukaryotic gene expression
    Klaus Wethmar · 2014 · Wiley Interdisciplinary Reviews - RNA
  15. LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property
    Siyu Han, Yanchun Liang, Qin Ma, Yangyi Xu, Yu Zhang, Wei Du, Cankun Wang, Ying Li · 2018 · Briefings in Bioinformatics
  16. Evolution at two levels of gene expression in yeast
    Artieri, Carlo G., Fraser, Hunter B. · 2014 · Genome Research
  17. Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae
    Jenna E. Smith, Juan R. Alvarez‐Dominguez, Nicholas Kline, Nathan J. Huynh, Sarah J. Geisler, Wenqian Hu, Jeff M. Coller, Kristian E. Baker · 2014 · Cell Reports
  18. Codon bias confers stability to human mRNAs
    Fabian Hia, Sheng Fan Yang, Yuichi Shichino, Masanori Yoshinaga, Yasuhiro Murakawa, Alexis Vandenbon, Akira Fukao, Toshinobu Fujiwara, Markus Landthaler, Tohru Natsume et al. · 2019 · EMBO Reports
  19. Statistics requantitates the central dogma
    Jingyi Jessica Li, Mark D. Biggin · 2015 · Science
  20. Origins of De Novo Genes in Human and Chimpanzee
    Ruiz-Orera, Jorge, Hernandez-Rodriguez, Jessica, Chiva, Cristina, Sabidó, Eduard, Kondova, Ivanela, Bontrop, Ronald, Marqués-Bonet, Tomàs, Albà, M.Mar · 2015 · PLOS Genetics
  21. Function and Evolution of Upstream ORFs in Eukaryotes
    Hong Zhang, Yirong Wang, Jian Lü · 2019 · Trends in Biochemical Sciences
  22. Reinitiation and Other Unconventional Posttermination Events during Eukaryotic Translation
    Maxim A. Skabkin, Olga V. Skabkina, Christopher U.T. Hellen, Tatyana V. Pestova · 2013 · Molecular Cell
  23. FNDC5/Irisin – Their Role in the Nervous System and as a Mediator for Beneficial Effects of Exercise on the Brain
    Christiane D. Wrann · 2015 · Brain Plasticity
  24. Autoregulation of Connexin43 Gap Junction Formation by Internally Translated Isoforms
    James W. Smyth, Robin M. Shaw · 2013 · Cell Reports
  25. The unfolded protein response in fission yeast modulates stability of select mRNAs to maintain protein homeostasis
    Philipp Kimmig, Marcy Diaz, Jiashun Zheng, Christopher C. Williams, Alexander B. Lang, Tomás Aragón, Hao Li, Peter Walter · 2012 · eLife
  26. Translation regulation via nascent polypeptide-mediated ribosome stalling
    Daniel N. Wilson, Stefan Arenz, Roland Beckmann · 2016 · Current Opinion in Structural Biology
  27. Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
    Joshua G. Dunn, Jonathan S. Weissman · 2016 · BMC Genomics
  28. Proteome Turnover in the Spotlight: Approaches, Applications, and Perspectives
    Alison B. Ross, Julian D. Langer, Marko Jovanović · 2020 · Molecular & Cellular Proteomics
  29. Genome-wide identification and differential analysis of translational initiation
    Peng Zhang, Dandan He, Yi Xu, Jiakai Hou, Bih-Fang Pan, Yunfei Wang, Tao Liu, Christel M. Davis, Erik A. Ehli, Lin Tan et al. · 2017 · Nature Communications
  30. When Long Noncoding Becomes Protein Coding
    Corrine Corrina R. Hartford, Ashish Lal · 2020 · Molecular and Cellular Biology
  31. Cyclic GMP-AMP synthase promotes the inflammatory and autophagy responses in Huntington disease
    Sharma, Manish, Rajendrarao, Sumitha, Shahani, Neelam, Ramírez-Jarquín, Uri Nimrod, Subramaniam, Srinivasa · 2020 · Proceedings of the National Academy of Sciences
  32. A high-resolution map of human RNA translation
    Sonia Pankaj Chothani, Eleonora Adami, Anissa Anindya Widjaja, Sarah R. Langley, Sivakumar Viswanathan, Chee Jian Pua, Nevin Tham, Nathan Harmston, Giuseppe Alessandro D’Agostino, Nicola Whiffin et al. · 2022 · Molecular Cell
  33. Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs
    Thomas C. Roberts, Kevin V. Morris, Marc S. Weinberg · 2013 · Epigenetics
  34. Comparative ribosome profiling reveals extensive translational complexity in differentTrypanosoma bruceilife cycle stages
    Juan-José Vasquez, Chung-Chau Hon, Jens T. Vanselow, Andreas Schlösser, T. Nicolai Siegel · 2014 · Nucleic Acids Research
  35. Ribonuclease selection for ribosome profiling
    Maxim V. Gerashchenko, Vadim N. Gladyshev · 2016 · Nucleic Acids Research
  36. Dynamics of Chloroplast Translation during Chloroplast Differentiation in Maize
    Prakitchai Chotewutmontri, Alice Barkan · 2016 · PLoS Genetics
  37. The in vivo endothelial cell translatome is highly heterogeneous across vascular beds
    Audrey C. A. Cleuren, Martijn A. van der Ent, Hui Jiang, Kristina L. Hunker, Andrew Yee, David R. Siemieniak, Grietje Molema, William C. Aird, Santhi K. Ganesh, David Ginsburg · 2019 · Proceedings of the National Academy of Sciences
  38. Rare Codons Regulate KRas Oncogenesis
    Benjamin L. Lampson, Nicole L. Pershing, Joseph A. Prinz, Joshua R. Lacsina, William F. Marzluff, Christopher V. Nicchitta, David M. MacAlpine, Christopher M. Counter · 2012 · Current Biology
  39. Regulation of Splicing Factors by Alternative Splicing and NMD Is Conserved between Kingdoms Yet Evolutionarily Flexible
    Liana F. Lareau, Steven E. Brenner · 2015 · Molecular Biology and Evolution
  40. Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum
    Evelien M. Bunnik, Duk-Won Doug Chung, Michael Hamilton, Nadia Ponts, Anita Saraf, Jacques G. Prudhomme, Laurence A. Florens, Karine G. Le Roch · 2013 · Genome biology
  41. Long noncoding RNA expression profiling in cancer: Challenges and opportunities
    Lucía Lorenzi, Francisco Avila Cobos, Anneleen Decock, Celine Everaert, Hetty Hilde Helsmoortel, Steve Lefever, Karen Verboom, Pieter‐Jan Volders, Frank Speleman, Jo Vandesompele et al. · 2018 · Genes Chromosomes and Cancer
  42. Translation of noncoding RNAs and cancer
    Bo Zhou, Huan Yang, Chuan He Yang, Yulu Bao, Shiming Yang, Jiao Liu, Yufeng Xiao · 2020 · Cancer Letters
  43. Reduced autophagy upon C9ORF72 loss synergizes with dipeptide repeat protein toxicity in G4C2 repeat expansion disorders
    Boivin, Manon, Pfister, Véronique, Gaucherot, Angeline, Ruffenach, Frank, Negroni, Luc, Sellier, Chantal, Charlet‐Berguerand, Nicolas · 2020 · The EMBO Journal
  44. Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides
    Jiao Ma, Jolene K. Diedrich, Irwin Jungreis, Cynthia J. Donaldson, Joan M. Vaughan, M Kellis, John R. Yates, Alan Saghatelian · 2016 · Analytical Chemistry
  45. Axonemal Dynein Arms
    Stephen M. King · 2016 · Cold Spring Harbor Perspectives in Biology
  46. Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
    Weingarten-Gabbay, Shira, Klaeger, Susan, Sarkizova, Siranush, Pearlman, Leah R., Chen, Da-Yuan, Gallagher, Kathleen M.E., Bauer, Matthew R., Taylor, Hannah B., Dunn, W. Augustine, Tarr, Christina et al. · 2021 · Cell
  47. Machine Learning Helps Identify CHRONO as a Circadian Clock Component
    Ron C. Anafi, Yool Lee, Trey K. Sato, Anand Venkataraman, Chidambaram Ramanathan, İbrahim Halil Kavaklı, Michael E. Hughes, Julie E. Baggs, Jacqueline Growe, Andrew C. Liu et al. · 2014 · PLoS Biology
  48. Selective 40S Footprinting Reveals Cap-Tethered Ribosome Scanning in Human Cells
    2020
  49. Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi
    Pablo Smircich, Guillermo Eastman, Saloê Bispo Poubel, Marı́a Ana Duhagon, Eloise Pavão Guerra-Slompo, Beatríz Garat, Samuel Goldenberg, David J. Munroe, Bruno Dallagiovanna, Fabíola Holetz et al. · 2015 · BMC Genomics
  50. ROS-induced ribosome impairment underlies ZAKα-mediated metabolic decline in obesity and aging
    Goda Snieckute, Laura Ryder, Anna Constance Vind, Zhenzhen Wu, Frederic Schrøder Arendrup, Mark Stoneley, Sébastien Chamois, Ana Martínez‐Val, Marion Leleu, René Dreos et al. · 2023 · Science
  51. Translational regulation by uORFs and start codon selection stringency
    Thomas E. Dever, Ivaylo P. Ivanov, Alan G. Hinnebusch · 2023 · Genes & Development
  52. Repeat-associated non-ATG (RAN) translation in neurological disease
    J. D. Cleary, Laura P.W. Ranum · 2013 · Human Molecular Genetics
  53. Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
    Anil Raj, Sidney H. Wang, Heejung Shim, Arbel Harpak, Yang Li, Brett W. Engelmann, Matthew Stephens, Yoav Gilad, Jonathan K. Pritchard · 2016 · eLife
  54. Insights into the mechanisms of eukaryotic translation gained with ribosome profiling
    Dmitry E. Andreev, Patrick B. F. O’Connor, Gary Loughran, Sergey E. Dmitriev, Pavel V. Baranov, Ivan N. Shatsky · 2016 · Nucleic Acids Research
  55. Translation initiation by cap‐dependent ribosome recruitment: Recent insights and open questions
    Nikolay E. Shirokikh, Thomas Preiß · 2018 · Wiley Interdisciplinary Reviews - RNA
  56. Large-Scale Discovery of Non-conventional Peptides in Maize and Arabidopsis through an Integrated Peptidogenomic Pipeline
    Shunxi Wang, Lei Tian, Haijun Liu, Xiang Li, Jinghua Zhang, Xueyan Chen, Xingmeng Jia, Xu Zheng, Shu‐Biao Wu, Yanhui Chen et al. · 2020 · Molecular Plant
  57. Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement
    T.V. Budkevich, Jan Giesebrecht, Elmar Behrmann, J. Loerke, David J. F. Ramrath, Thorsten Mielke, Jochen Ismer, Peter Werner Hildebrand, Chang‐Shung Tung, Knud H. Nierhaus et al. · 2014 · Cell
  58. The Long Non-Coding RNA GAS5 Cooperates with the Eukaryotic Translation Initiation Factor 4E to Regulate c-Myc Translation
    Guangzhen Hu, Zhenkun Lou, Mamta Gupta · 2014 · PLoS ONE
  59. A Bicistronic MAVS Transcript Highlights a Class of Truncated Variants in Antiviral Immunity
    Sky W. Brubaker, Anna E. Gauthier, Eric W. Mills, Nicholas T. Ingolia, Jonathan C. Kagan · 2014 · Cell
  60. CUG initiation and frameshifting enable production of dipeptide repeat proteins from ALS/FTD C9ORF72 transcripts
    Ricardos Tabet, Laure Schaeffer, Fernande Freyermuth, Mélanie Jambeau, Michael J. Workman, Chao-Zong Lee, Chun-Chia Lin, Jie Jiang, Karen R. Jansen‐West, Hussein Abou‐Hamdan et al. · 2018 · Nature Communications
  61. PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
    Jeroen Crappé, Elvis Ndah, Alexander Koch, Sandra Steyaert, Daria Fijałkowska, Sarah De Keulenaer, Ellen De Meester, Tim De Meyer, Wim Van Criekinge, Petra Van Damme et al. · 2014 · Nucleic Acids Research
  62. BRCA1185delAG tumors may acquire therapy resistance through expression of RING-less BRCA1
    Rinske Drost, Kiranjit K. Dhillon, Hanneke M.L. van der Gulden, Ingrid van der Heijden, Inger Brandsma, Cristina Cruz, Dafni Chondronasiou, Marta Castroviejo‐Bermejo, Ute Boon, Eva Schut et al. · 2016 · Journal of Clinical Investigation
  63. CPPred: coding potential prediction based on the global description of RNA sequence
    Xiaoxue Tong, Shiyong Liu · 2019 · Nucleic Acids Research
  64. Multiple repressive mechanisms in the hippocampus during memory formation
    Jun Cho, Nam‐Kyung Yu, Jun‐Hyeok Choi, Su-Eon Sim, SukJae Joshua Kang, Chuljung Kwak, Seung‐Woo Lee, Ji‐il Kim, Dong Il Choi, V. Narry Kim et al. · 2015 · Science
  65. The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis
    Betty Chung, Thomas J. Hardcastle, Joshua D. Jones, Nerea Irigoyen, Andrew E. Firth, David C. Baulcombe, Ian Brierley · 2015 · RNA
  66. Polyamine Control of Translation Elongation Regulates Start Site Selection on Antizyme Inhibitor mRNA via Ribosome Queuing
    Ivaylo P. Ivanov, Byung‐Sik Shin, Gary Loughran, Ioanna Tzani, Sara K. Young, Chune Cao, John F. Atkins, Thomas E. Dever · 2018 · Molecular Cell
  67. Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome
    Lorenzo Calviello, Uwe Ohler · 2017 · Trends in Genetics
  68. Structure mapping of dengue and Zika viruses reveals functional long-range interactions
    Roland G. Huber, Xin Ni Lim, Wy Ching Ng, Adelene Y. L. Sim, Hui Xian Poh, Yang Shen, Su Ying Lim, Karin B. Sundstrom, Alfred Xuyang Sun, Jong Ghut Ashley Aw et al. · 2019 · Nature Communications
  69. Profiling and functional characterization of maternal mRNA translation during mouse maternal-to-zygotic transition
    Chunxia Zhang, Meng Wang, Yisi Li, Yi Zhang · 2022 · Science Advances
  70. Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation
    Carlo G. Artieri, Hunter B. Fraser · 2014 · Genome Research
  71. A Rapid Ribosome Profiling Method Elucidates Chloroplast Ribosome Behavior in Vivo
    Reimo Zoschke, Kenneth P. Watkins, Alice Barkan · 2013 · The Plant Cell
  72. A Ribosomal Perspective on Proteostasis and Aging
    Kristan K. Steffen, Andrew G. Dillin · 2016 · Cell Metabolism
  73. Widespread Translational Remodeling during Human Neuronal Differentiation
    John D. Blair, Dirk F. Hockemeyer, Jennifer A. Doudna, Helen S. Bateup, Stephen N. Floor · 2017 · Cell Reports
  74. Translation of neutrally evolving peptides provides a basis for de novo gene evolution
    Jorge Ruiz‐Orera, Pol Verdaguer-Grau, José Luis Villanueva‐Cañas, Xavier Messeguer, M. Mar Albà · 2018 · Nature Ecology & Evolution
  75. Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation
    Jorge Ruiz‐Orera, M. Mar Albà · 2018 · Trends in Genetics
  76. Transcriptome-wide sites of collided ribosomes reveal principles of translational pausing
    Alaaddin Bulak Arpat, Angélica Liechti, Mara De Matos, René Dreos, Peggy Janich, David Gatfield · 2020 · Genome Research
  77. A role for FNDC5/Irisin in the beneficial effects of exercise on the brain and in neurodegenerative diseases
    Michael F. Young, Sophia Valaris, Christiane D. Wrann · 2019 · Progress in Cardiovascular Diseases
  78. Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes
    Zachary Katz, Brian P. English, Timothée Lionnet, Young J. Yoon, Nilah M. Ioannidis, Ben Ovryn, Mark Bathe, Robert H. Singer · 2016 · eLife
  79. Introns in UTRs: why we should stop ignoring them
    Bicknell, Alicia A., Cenik, Can, Chua, Hon N., Roth, Frederick P., Moore, Melissa J. · 2012 · BioEssays
  80. Decoding mechanisms by which silent codon changes influence protein biogenesis and function
    Vedrana Bali, Zsuzsanna M. Bebok · 2015 · The International Journal of Biochemistry & Cell Biology
  81. Modelling the Efficiency of Codon–tRNA Interactions Based on Codon Usage Bias
    Renana Sabi, Tamir Tuller · 2014 · DNA Research
  82. Asc1, Hel2, and Slh1 couple translation arrest to nascent chain degradation
    Cole S. Sitron, Joseph H. Park, Onn Brandman · 2017 · RNA
  83. Long noncoding RNAs: lincs between human health and disease
    Zhi Hao Kwok, Yvonne Tay · 2017 · Biochemical Society Transactions
  84. N-terminal Proteomics and Ribosome Profiling Provide a Comprehensive View of the Alternative Translation Initiation Landscape in Mice and Men
    Petra Van Damme, Daria Fijałkowska, Wim Van Criekinge, Gerben Menschaert · 2014 · Molecular & Cellular Proteomics
  85. Local translation in neuronal processes
    Anne Biever, Paul Donlin-Asp, Erin Margaret Schuman · 2019 · Current Opinion in Neurobiology
  86. Advances in long noncoding RNAs: identification, structure prediction and function annotation
    Xingli Guo, Lin Gao, Yu Wang, David Chiu, Tong Wang, Yue Cheng Deng · 2015 · Briefings in Functional Genomics
  87. Exploring long non-coding RNAs through sequencing
    Sophie R. Atkinson, Samuel Marguerat, Jürg Bähler · 2011 · Seminars in Cell and Developmental Biology
  88. Connections Underlying Translation and mRNA Stability
    Aditya Radhakrishnan, Rachel Green · 2016 · Journal of Molecular Biology
  89. Selective stalling of human translation through small-molecule engagement of the ribosome nascent chain
    Nathanael G. Lintner, Kim F. McClure, Donna N. Petersen, Allyn T. Londregan, David W. Piotrowski, Liuqing Wei, Jun Xiao, Michael W. Bolt, Paula M. Loria, Bruce A. Maguire et al. · 2017 · PLoS Biology
  90. Multifaceted deregulation of gene expression and protein synthesis with age
    Aleksandra S. Anisimova, Mark Meerson, Maxim V. Gerashchenko, Ivan V. Kulakovskiy, Sergey E. Dmitriev, Vadim N. Gladyshev · 2020 · Proceedings of the National Academy of Sciences
  91. Translating DRiPs: MHC class I immunosurveillance of pathogens and tumors
    Luis C. Antón, Jonathan Wilson Yewdell · 2014 · Journal of Leukocyte Biology
  92. Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes
    Annemarie H. Becker, Eugene Oh, Jonathan S. Weissman, Günter Krämer, Bernd Bukau · 2013 · Nature Protocols
  93. Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants
    Cheng‐Yu Hou, Wen‐Chi Lee, Hsiao‐Chun Chou, Aiping Chen, Shu‐Jen Chou, Ho‐Ming Chen · 2016 · The Plant Cell
  94. Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation
    Alex Tuck, Aneliya Rankova, Alaaddin Bulak Arpat, Luz Angélica Liechti, Daniel Heß, Vytautas Iešmantavičius, Violeta Castelo-Szekely, David Gatfield, Marc Bühler · 2020 · Molecular Cell
  95. SmProt: a database of small proteins encoded by annotated coding and non-coding RNA loci
    Yajing Hao, Lili Zhang, Yiwei Niu, Tanxi Cai, Jianjun Luo, Shunmin He, Bao Zhang, Dejiu Zhang, Yan Qin, Fuquan Yang et al. · 2017 · Briefings in Bioinformatics
  96. Translatomics: The Global View of Translation
    Jing Zhao, Bo Qin, Rainer Nikolay, Christian M. T. Spahn, Gong Zhang · 2019 · International Journal of Molecular Sciences
  97. Coding regions affect mRNA stability in human cells
    Ashrut Narula, James Ellis, J. Matthew Taliaferro, Olivia S. Rissland · 2019 · RNA
  98. Translatable circRNAs and lncRNAs: Driving mechanisms and functions of their translation products
    Shan Kong, Mei Tao, Xianjuan Shen, Shaoqing Ju · 2020 · Cancer Letters
  99. The Coding and Noncoding Architecture of the Caulobacter crescentus Genome
    Jared M. Schrader, Bo Zhou, Gene‐Wei Li, Keren Lasker, W. Seth Childers, Brandon Williams, Tao Long, Sean Crosson, Harley H. McAdams, Jonathan S. Weissman et al. · 2014 · PLoS Genetics
  100. Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis
    Teck Yew Low, Sebastiaan van Heesch, Henk van den Toorn, Piero Giansanti, Alba Cristobal, Pim W. Toonen, Sebastian Schäfer, Norbert Hübner, Bas van Breukelen, Shabaz Mohammed et al. · 2013 · Cell Reports