Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

Ingolia, Nicholas T., Lareau, Liana F., Weissman, Jonathan S.·2011·Cell

DOI 10.1016/j.cell.2011.10.002

Cited by (1,003)

Items 201–300 of 1,003

LncRNA-encoded polypeptide ASRPS inhibits triple-negative breast cancer angiogenesis
Wang, Yirong, Wu, Siqi, Zhu, Xun, Zhang, Liyuan, Deng, Jieqiong, Li, Fang, Guo, Binbin, Zhang, Shenghua, Wu, Rui, Zhang, Zheng et al. · 2020 · Journal of Experimental Medicine
Characterizing 5-methylcytosine in the mammalian epitranscriptome
Shobbir Hussain, Jelena Aleksic, Sandra Blanco, Sabine Dietmann, Michaela Frye · 2013 · Genome biology
Strong Purifying Selection at Synonymous Sites in D. melanogaster
David S. Lawrie, Philipp W. Messer, Ruth Hershberg, Dmitri A. Petrov · 2013 · PLoS Genetics
CRNDE: A Long Non-Coding RNA Involved in CanceR, Neurobiology, and DEvelopment
Blake C. Ellis, Peter L. Molloy, Lloyd D. Graham · 2012 · Frontiers in Genetics
Purification of cross-linked RNA-protein complexes by phenol-toluol extraction
Erika C. Urdaneta, Carlos H. Vieira-Vieira, Timon Hick, Hans-Herrmann Wessels, Davide Figini, Rebecca Moschall, Jan Medenbach, Uwe Ohler, Sander Granneman, Matthias Selbach et al. · 2019 · Nature Communications
Stop codon context influences genome-wide stimulation of termination codon readthrough by aminoglycosides
Jamie R Wangen, Rachel Green · 2020 · eLife
Extensive identification and analysis of conserved small ORFs in animals
Mackowiak, Sebastian D., Zauber, Henrik, Bielow, Chris, Thiel, Denise, Kutz, Kamila, Calviello, Lorenzo, Mastrobuoni, Guido, Rajewsky, Nikolaus, Kempa, Stefan, Selbach, Matthias et al. · 2015 · Genome Biology
Leucine-tRNA Initiates at CUG Start Codons for Protein Synthesis and Presentation by MHC Class I
Shelley R. Starck, Vivian Jiang, Mariana Pavon-Eternod, Sharanya Prasad, Brian McCarthy, Tao Pan, Nilabh Shastri · 2012 · Science
Primate-Specific ORF0 Contributes to Retrotransposon-Mediated Diversity
Ahmet M. Denli, Iñigo Narvaiza, Bilal E. Kerman, Monique Pena, Christopher W. Benner, Maria Carolina Marchetto, Jolene K. Diedrich, Aaron Aslanian, Jiao Ma, James J. Moresco et al. · 2015 · Cell
LIN28A Is a Suppressor of ER-Associated Translation in Embryonic Stem Cells
Jun Cho, Hyeshik Chang, S. Chul Kwon, Baekgyu Kim, Yoosik Kim, Junho Choe, Minju Ha, Yoon Ki Kim, V. Narry Kim · 2012 · Cell
Long non-coding RNAs as regulators of the endocrine system
Marko Knoll, Harvey F. Lodish, Lei Sun · 2015 · Nature Reviews Endocrinology
Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
Jeremy E. Wilusz · 2015 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Stochastic mechano-chemical kinetics of molecular motors: A multidisciplinary enterprise from a physicist’s perspective
Debashish Chowdhury · 2013 · Physics Reports
A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells
Ailone Tichon, Noa Gil, Yoav Lubelsky, Tal Havkin-Solomon, Doron Lemze, Shalev Itzkovitz, Noam Stern‐Ginossar, Igor Ulitsky · 2016 · Nature Communications
RAN translation at C9orf72-associated repeat expansions is selectively enhanced by the integrated stress response
Katelyn M. Green, M. Rebecca Glineburg, Michael G. Kearse, Brittany N. Flores, Alexander E. Linsalata, Stephen Fedak, Aaron C. Goldstrohm, Sami J. Barmada, Peter K. Todd · 2017 · Nature Communications
Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast
Jeffrey A. Hussmann, Stephanie Patchett, Alan M. Johnson, Sara L. Sawyer, William H. Press · 2015 · PLoS Genetics
High-Precision Analysis of Translational Pausing by Ribosome Profiling in Bacteria Lacking EFP
Christopher J. Woolstenhulme, Nicholas R. Guydosh, Rachel Green, Allen R. Buskirk · 2015 · Cell Reports
Cellular Differences in Protein Synthesis Regulate Tissue Homeostasis
Michael Buszczak, Robert A. J. Signer, Sean J. Morrison · 2014 · Cell
Heterogeneity and specialized functions of translation machinery: from genes to organisms
Naomi R. Genuth, Maria Barna · 2018 · Nature Reviews Genetics
The tRNA methyltransferase Dnmt2 is required for accurate polypeptide synthesis during haematopoiesis
Francesca Tuorto, Friederike Herbst, Nader Alerasool, Sebastian Bender, Oliver Popp, Giuseppina Federico, Sonja Reitter, Reinhard Liebers, Georg Stoecklin, Hermann‐Josef Gröne et al. · 2015 · The EMBO Journal
Long noncoding RNAs in innate and adaptive immunity
Katherine A. Fitzgerald, Daniel R. Caffrey · 2013 · Current Opinion in Immunology
The complexity of the translation ability of circRNAs
Javier Tadeo Granados-Riveron, Guillermo Aquino‐Jarquín · 2016 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Biosynthesis, structure, and folding of the insulin precursor protein
Ming Rong Liu, Michael Aaron Weiss, Anoop Arunagiri, Jing Yong, Nischay K. Rege, Jinhong Sun, Leena Haataja, Randal J. Kaufman, Peter Arvan · 2018 · Diabetes Obesity and Metabolism
Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways
Martino Colombo, Evangelos D. Karousis, Joël Bourquin, Rémy Bruggmann, Oliver Mühlemann · 2016 · RNA
A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
Alexander P. Fields, Edwin H. Rodriguez, Marko Jovanović, Noam Stern‐Ginossar, Brian J. Haas, Philipp Mertins, Raktima Raychowdhury, Nir Hacohen, Steven A. Carr, Nicholas T. Ingolia et al. · 2015 · Molecular Cell
Improved Ribo-seq enables identification of cryptic translation events
Florian Erhard, Anne Halenius, Cosima Zimmermann, Anne L’Hernault, Daniel Johannes Kowalewski, Michael P. Weekes, Stefan Stevanović, Ralf Zimmer, Lars Dölken · 2018 · Nature Methods
The Functions and Unique Features of LncRNAs in Cancer Development and Tumorigenesis
Kenzui Taniue, Nobuyoshi Akimitsu · 2021 · International Journal of Molecular Sciences
Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3′UTRs In Vivo
David J. Young, Nicholas R. Guydosh, Fan Zhang, Alan G. Hinnebusch, Rachel Green · 2015 · Cell
High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling
Nerea Irigoyen, Andrew E. Firth, Joshua D. Jones, Betty Chung, Stuart G. Siddell, Ian Brierley · 2016 · PLoS Pathogens
Down-Regulation of m6A mRNA Methylation Is Involved in Dopaminergic Neuronal Death
Xuechai Chen, Chunyu Yu, Minjun Guo, Xiaotong Zheng, Sakhawat Ali, Hua Huang, Lihua Zhang, Shensen Wang, Yinghui Huang, Shuyan Qie et al. · 2019 · ACS Chemical Neuroscience
Long noncoding RNAs in C. elegans
Jin‐Wu Nam, David P. Bartel · 2012 · Genome Research
Multiple roles of the coding sequence 5′ end in gene expression regulation
Tuller, Tamir, Zur, Hadas · 2015 · Nucleic Acids Research
Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome
Benoît Vanderperre, Jean-François Lucier, Cyntia Bissonnette, J. Motard, Guillaume Tremblay, Solene Vanderperre, Maxence Wisztorski, M. Salzet, F. Boisvert, X. Roucou · 2013 · PLoS ONE
Mechanisms and implications of programmed translational frameshifting
Jonathan D. Dinman · 2012 · Wiley Interdisciplinary Reviews - RNA
Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes
Søren Lykke‐Andersen, Yun Chen, Britt Kidmose Ardal, Berit Lilje, Johannes Waage, Albin Sandelin, Torben Heick Jensen · 2014 · Genes & Development
Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome
Meydan, Sezen, Marks, James, Klepacki, Dorota, Sharma, Virag, Baranov, Pavel V., Firth, Andrew E., Margus, Tōnu, Kefi, Amira, Vázquez-Laslop, Nora, Mankin, Alexander S. · 2019 · Molecular Cell
Measurement of average decoding rates of the 61 sense codons in vivo
Justin Gardin, Rukhsana Yeasmin, Alisa Yurovsky, Ying Cai, Steven Skiena, Bruce Futcher · 2014 · eLife
Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting
Claudia Fritsch, Alexander Herrmann, Michael Nothnagel, Karol Szafranski, Klaus Huse, Frank H. Schumann, Stefan Schreiber, Matthias Platzer, Michael Krawczak, Jochen Hampe et al. · 2012 · Genome Research
Translational Control in Virus-Infected Cells
Noam Stern‐Ginossar, Sunnie R. Thompson, Michael B. Mathews, Ian Mohr · 2018 · Cold Spring Harbor Perspectives in Biology
The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease
Thomas C. Roberts, Kevin V. Morris, Matthew J. A. Wood · 2014 · Philosophical Transactions of the Royal Society B Biological Sciences
Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome
Kaori Kashi, Lindsey Henderson, Alessandro Bonetti, Piero Carninci · 2015 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish
Guo-Liang Chew, Andrea Pauli, Alexander F. Schier · 2016 · Nature Communications
mRNA transport & local translation in neurons
Caspar Glock, Maximilian Heumüller, Erin Margaret Schuman · 2017 · Current Opinion in Neurobiology
Translating the genome in time and space: Specialized ribosomes, RNA regulons, and RNA-binding proteins
Shi, Zhen, Barna, Maria · 2015 · Annual Review of Cell and Developmental Biology
Loss of a Conserved tRNA Anticodon Modification Perturbs Cellular Signaling
Boris Zinshteyn, Wendy V. Gilbert · 2013 · PLoS Genetics
Ribosomal Stalling During Translation: Providing Substrates for Ribosome-Associated Protein Quality Control
Claudio A.P. Joazeiro · 2017 · Annual Review of Cell and Developmental Biology
Most non-canonical proteins uniquely populate the proteome or immunopeptidome
Maria Virginia Ruiz Cuevas, Marie‐Pierre Hardy, Jaroslav Hollý, Éric Bonneil, Chantal Durette, Mathieu Courcelles, Joël Lanoix, Caroline Côté, Louis M. Staudt, Sébastien Lemieux et al. · 2021 · Cell Reports
Coding or Noncoding, the Converging Concepts of RNAs
Jing Li, Changning Liu · 2019 · Frontiers in Genetics
Crosstalk between metabolic reprogramming and epigenetics in cancer: updates on mechanisms and therapeutic opportunities
Tongxin Ge, Xiang Gu, Renbing Jia, Shengfang Ge, Peiwei Chai, Ai Zhuang, Xianqun Fan · 2022 · 癌症：英文版
Listerin-Dependent Nascent Protein Ubiquitination Relies on Ribosome Subunit Dissociation
Sichen Shao, Karina von der Malsburg, Ramanujan S. Hegde · 2013 · Molecular Cell
Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells
Xavier Pichon, Amandine Bastide, Adham Safieddine, Racha Chouaib, Aubin Samacoïts, Eugenia I. Basyuk, Marion Peter, Florian Mueller, Édouard Bertrand · 2016 · The Journal of Cell Biology
Queuosine‐modified tRNAs confer nutritional control of protein translation
Francesca Tuorto, Carine Legrand, Cansu Cirzi, Giuseppina Federico, Reinhard Liebers, Martin Müller, Ann E. Ehrenhofer‐Murray, Gunnar A. G. Dittmar, Hermann‐Josef Gröne, Frank Lyko · 2018 · The EMBO Journal
Regulation of mRNA translation during mitosis
Marvin E. Tanenbaum, Noam Stern‐Ginossar, Jonathan S. Weissman, Ronald D. Vale · 2015 · eLife
Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation
Rubio, Claudia A, Weisburd, Benjamin, Holderfield, Matthew, Arias, Carolina, Fang, Eric, DeRisi, Joseph L, Fanidi, Abdallah · 2014 · Genome Biology
A perspective on mammalian upstream open reading frame function
Joanna Somers, Tuija A. A. Pöyry, Anne E. Willis · 2013 · The International Journal of Biochemistry & Cell Biology
Translation of cytoplasmic UBA1 contributes to VEXAS syndrome pathogenesis
Marcela A. Ferrada, Sinisa Savic, Daniela Ospina Cardona, Jason C. Collins, Hugh D. Alessi, Fernanda Gutierrez‐Rodrigues, Dinesh Babu Uthaya Kumar, Lorena Wilson, Wendy J. Goodspeed, James S. Topilow et al. · 2022 · Blood
Observation of dually decoded regions of the human genome using ribosome profiling data
Audrey M. Michel, Kingshuk Roy Choudhury, Andrew E. Firth, Nicholas T. Ingolia, John F. Atkins, Pavel V. Baranov · 2012 · Genome Research
Measurements of translation initiation from all 64 codons in E. coli
Ariel Hecht, Jeff E. Glasgow, Paul R. Jaschke, Lukmaan A. Bawazer, Matthew S. Munson, Jennifer R. Cochran, Drew Endy, Marc Salit · 2017 · Nucleic Acids Research
Spatially resolved single-cell translatomics at molecular resolution
2023
Control of gene expression through the nonsense-mediated RNA decay pathway
Andrew Nickless, Julie M. Bailis, Zhongsheng You · 2017 · Cell & Bioscience
Multi-Color Single-Molecule Imaging Uncovers Extensive Heterogeneity in mRNA Decoding
Sanne Boersma, Deepak Khuperkar, Bram M P Verhagen, Stijn Sonneveld, Jonathan B. Grimm, Luke D. Lavis, Marvin E. Tanenbaum · 2019 · Cell
SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism
Lise Lotte Christensen, Kirsten True, Mark P. Hamilton, Morten Milek Nielsen, Nkerorema Djodji Damas, Christian Kroun Damgaard, Halit Ongen, Emmanouil T. Dermitzakis, Jesper B. Bramsen, Jakob Skou Pedersen et al. · 2016 · Molecular Oncology
An update on sORFs.org: a repository of small ORFs identified by ribosome profiling
Volodimir Olexiouk, Wim Van Criekinge, Gerben Menschaert · 2017 · Nucleic Acids Research
Identifying Small Proteins by Ribosome Profiling with Stalled Initiation Complexes
Jeremy Weaver, Fuad Mohammad, Allen R. Buskirk, Gisela Storz · 2019 · mBio
Translational control of stem cell function
James A. Saba, Kifayathullah Liakath‐Ali, Rachel Green, Fiona M. Watt · 2021 · Nature Reviews Molecular Cell Biology
Discovery of Human sORF-Encoded Polypeptides (SEPs) in Cell Lines and Tissue
Jiao Ma, Carl Ward, Irwin Jungreis, Sarah A. Slavoff, Adam G. Schwaid, John M. Neveu, Bogdan Budnik, M Kellis, Alan Saghatelian · 2014 · Journal of Proteome Research
Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings
Fu‐Yuan Zhu, Mo‐Xian Chen, Nenghui Ye, Lu Shi, Kailong Ma, Jing‐Fang Yang, Yunying Cao, Youjun Zhang, Takuya Yoshida, Alisdair Robert Fernie et al. · 2017 · The Plant Journal
Translational Landscape of Photomorphogenic Arabidopsis
Ming‐Jung Liu, Szu-Hsien Wu, Jing-Fen Wu, Wen‐Dar Lin, Yichen Wu, Tsung-Ying Tsai, Huang-Lung Tsai, Shu‐Hsing Wu · 2013 · The Plant Cell
Discovery of a Small Non-AUG-Initiated ORF in Poleroviruses and Luteoviruses That Is Required for Long-Distance Movement
Ekaterina Smirnova, Andrew E. Firth, Wyatt Allen Miller, Danièle Scheidecker, Véronique Brault, Catherine Reinbold, Aurélie M. Rakotondrafara, Betty Chung, Véronique Ziegler‐Graff · 2015 · PLoS Pathogens
Long Noncoding RNA in Hematopoiesis and Immunity
Ansuman T. Satpathy, Howard Y. Chang · 2015 · Immunity
The long non-coding RNA Fendrr links epigenetic control mechanisms to gene regulatory networks in mammalian embryogenesis
Phillip Grote, Bernhard G. Herrmann · 2013 · RNA Biology
The translatome of neuronal cell bodies, dendrites, and axons
Caspar Glock, Anne Biever, Georgi Tushev, Belquis Nassim-Assir, Allison H. Kao, Ina Bartnik, Susanne tom Dieck, Erin Margaret Schuman · 2021 · Proceedings of the National Academy of Sciences
Translation elongation can control translation initiation on eukaryotic mRNAs
Dominique Chu, Eleanna Kazana, Noémie Bellanger, Tarun Singh, Mick F. Tuite, Tobias von der Haar · 2013 · The EMBO Journal
Ribosome pausing, arrest and rescue in bacteria and eukaryotes
Allen R. Buskirk, Rachel Green · 2017 · Philosophical Transactions of the Royal Society B Biological Sciences
Disome and Trisome Profiling Reveal Genome-wide Targets of Ribosome Quality Control
Sezen Meydan, Nicholas R. Guydosh · 2020 · Molecular Cell
Quantitative analysis of mammalian translation initiation sites by FACS‐seq
Noderer, William L, Flockhart, Ross J, Bhaduri, Aparna, Diaz de Arce, Alexander J, Zhang, Jiajing, Khavari, Paul A, Wang, Clifford L · 2014 · Molecular Systems Biology
Genome-wide Survey of Ribosome Collision
Peixun Han, Yuichi Shichino, Tilman Schneider‐Poetsch, Mari Mito, Satoshi Hashimoto, Tsuyoshi Udagawa, Kenji Kohno, Minoru Yoshida, Yuichiro Mishima, Toshifumi Inada et al. · 2020 · Cell Reports
Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P
Lauri Peil, Agata L. Starosta, Jürgen Lassak, Gemma Catherine Atkinson, Kai Virumäe, Michaela Spitzer, Tanel Tenson, Kirsten Jung, Jaanus Rèmme, Daniel N. Wilson · 2013 · Proceedings of the National Academy of Sciences
Peroxisomal lactate dehydrogenase is generated by translational readthrough in mammals
Schueren, Fabian, Lingner, Thomas, George, Rosemol, Hofhuis, Julia, Dickel, Corinna, Gärtner, Jutta, Thoms, Sven · 2014 · eLife
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
義夫田中, Theofanis Karaletsos, Philipp Drewe, Vipin T. Sreedharan, David C. Kuo, Kamini Singh, Hans‐Guido Wendel, Gunnar Rätsch · 2016 · Bioinformatics
UFMylation of RPL26 links translocation-associated quality control to endoplasmic reticulum protein homeostasis
Lihui Wang, Yue Xu, Heather Marie Rogers, Layla F. Saidi, Constance Tom Noguchi, Honglin Li, Jonathan Wilson Yewdell, Nicholas R. Guydosh, Yihong Ye · 2019 · Cell Research
lncRNAs in development and disease: from functions to mechanisms
M. Joaquina Delàs, Gregory J. Hannon · 2017 · Open Biology
Noncoding RNAs in neurodegeneration
Salta, Evgenia, De Strooper, Bart · 2017 · Nature Reviews Neuroscience
Long noncoding RNAs in cancer cells
Duc‐Hiep Bach, Sang Kook Lee · 2018 · Cancer Letters
Reactivation of stalled polyribosomes in synaptic plasticity
Tyson Ernst Graber, Sarah Hébert-Seropian, Arkady Khoutorsky, Alexandre David, Jonathan Wilson Yewdell, Jean‐Claude Lacaille, Wayne S. Sossin · 2013 · Proceedings of the National Academy of Sciences
The translation factor eIF5A and human cancer
Michael B. Mathews, John W.B. Hershey · 2015 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Cotranslational signal-independent SRP preloading during membrane targeting
Justin William Chartron, Katherine C. L. Hunt, Judith Frydman · 2016 · Nature
Small RNAs in development – insights from plants
Xuemei Chen · 2012 · Current Opinion in Genetics & Development
Protein Folding Drives Disulfide Formation
Pallav Kosuri, Jorge Alegre‐Cebollada, Jason Feng, Anna R. Kaplan, Álvaro Inglés‐Prieto, Carmen L. Badilla, Brent R. Stockwell, José M. Sánchez‐Ruiz, Arne Holmgren, Julio M. Fernández · 2012 · Cell
Translational Control through Differential Ribosome Pausing during Amino Acid Limitation in Mammalian Cells
Alicia M. Darnell, Arvind Rasi Subramaniam, Erin K. O’Shea · 2018 · Molecular Cell
Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs
Jenny Chen, Alexander A. Shishkin, Xiaopeng Zhu, Sabah Kadri, Itay Maza, Mitchell Guttman, Jacob H. Hanna, Aviv Regev, Manuel G. Garber · 2016 · Genome biology
Alternative splicing: decoding an expansive regulatory layer
Irimia, Manuel, Blencowe, Benjamin J · 2012 · Current Opinion in Cell Biology
CGG Repeat-Associated Non-AUG Translation Utilizes a Cap-Dependent Scanning Mechanism of Initiation to Produce Toxic Proteins
Michael G. Kearse, Katelyn M. Green, Amy Krans, Caitlin M. Rodriguez, Alexander E. Linsalata, Aaron C. Goldstrohm, Peter K. Todd · 2016 · Molecular Cell
Deep Proteome Coverage Based on Ribosome Profiling Aids Mass Spectrometry-based Protein and Peptide Discovery and Provides Evidence of Alternative Translation Products and Near-cognate Translation Initiation Events*
Menschaert, Gerben, Van Criekinge, Wim, Notelaers, Tineke, Koch, Alexander, Crappé, Jeroen, Gevaert, Kris, Van Damme, Petra · 2013 · Molecular & Cellular Proteomics
Creating reference gene annotation for the mouse C57BL6/J genome assembly
Jonathan M. Mudge, Jennifer Harrow · 2015 · Mammalian Genome
DENR–MCT-1 promotes translation re-initiation downstream of uORFs to control tissue growth
Sibylle Schleich, Katrin Straßburger, Philipp Christoph Janiesch, Tatyana Koledachkina, Katharine K. Miller, Katharina Haneke, Yong-Sheng Cheng, Katrin Küchler, Georg Stoecklin, Kent E. Duncan et al. · 2014 · Nature
Primary Role for Endoplasmic Reticulum-bound Ribosomes in Cellular Translation Identified by Ribosome Profiling
Reid, David W., Nicchitta, Christopher V. · 2012 · Journal of Biological Chemistry
The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation
Maria Polycarpou‐Schwarz, Matthias Groß, Pieter Mestdagh, Johanna Schott, Stefanie E. Grund, Catherina Hildenbrand, Joachim Rom, Sebastian Aulmann, Hans‐Peter Sinn, Jo Vandesompele et al. · 2018 · Oncogene
The ribosome-engaged landscape of alternative splicing
Weatheritt, Robert J, Sterne-Weiler, Timothy, Blencowe, Benjamin J · 2016 · Nature Structural & Molecular Biology
Mod-seq: high-throughput sequencing for chemical probing of RNA structure
Jason Talkish, Gemma E. May, Yizhu Lin, John L. Woolford, C. Joel McManus · 2014 · RNA