Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes

Renier, Nicolas, Adams, Eliza L., Kirst, Christoph, Wu, Zhuhao, Azevedo, Ricardo, Kohl, Johannes, Autry, Anita E., Kadiri, Lolahon, Umadevi Venkataraju, Kannan, Zhou, Yu, Wang, Victoria X., Tang, Cheuk Y., Olsen, Olav, Dulac, Catherine, Osten, Pavel, Tessier-Lavigne, Marc·2016·Cell
DOI 10.1016/j.cell.2016.05.007

Cited by (921)

Items 401–500 of 921

  1. Three-dimensional identification of microvascular pathology and neurovascular inflammation in severe white matter hyperintensity: a case report
    Gemma Sole Guardia, Matthijs Luijten, Bram Geenen, Jurgen A.H.R. Claassen, Geert J. S. Litjens, Frank‐Erik de Leeuw, Maximilian Wiesmann, Amanda J. Kiliaan · 2024 · Scientific Reports
  2. Whole‐Brain Image Analysis and Anatomical Atlas 3D Generation Using MagellanMapper
    David Matthew Young, Clif Duhn, Michael C. Gilson, Mai Nojima, Deniz Yuruk, Aparna Kumar, Weimiao Yu, Stephan Sanders · 2020 · Current Protocols in Neuroscience
  3. Comparative Analyses of Clearing Efficacies of Tissue Clearing Protocols by Using a Punching Assisted Clarity Analysis
    Jiwon Woo, Eunice Yoojin Lee, Mirae Lee, Seockmo Ku, Jeong Yoon Park, Yong Eun Cho · 2022 · Frontiers in Bioengineering and Biotechnology
  4. Parenting as a model for behavioural switches
    Shanice Bailey, Yoh Isogai · 2022 · Current Opinion in Neurobiology
  5. mBrainAligner-Web: a web server for cross-modal coherent registration of whole mouse brains
    Yuanyuan Li, Jun Wu, Donghuan Lu, Chao Xu, Yefeng Zheng, Hanchuan Peng, Lei Qu · 2022 · Bioinformatics
  6. High‐throughput morphometric and transcriptomic profiling uncovers composition of naïve and sensory‐deprived cortical cholinergic VIP/CHAT neurons
    Nadav Yayon, Oren Amsalem, Tamara Zorbaz, Or Yakov, Serafima Dubnov, Katarzyna Winek, Amir Dudai, Gil Adam, Anna K. Schmidtner, Marc Tessier‐Lavigne et al. · 2022 · The EMBO Journal
  7. Cortical pain induced by optogenetic cortical spreading depression: from whole brain activity mapping
    Chenghui Pi, Wenjing Tang, Zhishuai Li, Yang Liu, Jing Qi, Wei Dai, Tao Wang, Chunxiao Yang, Shengyuan Yu · 2022 · Molecular Brain
  8. Sexual coordination in a whole-brain map of prairie vole pair bonding
    Morgan L. Gustison, Rodrigo Muñoz-Castañeda, Pavel Osten, Steven M. Phelps · 2023 · eLife
  9. Preclinical characterization of ACH-000029, a novel anxiolytic compound acting on serotonergic and alpha-adrenergic receptors
    Hatylas F. Z de Azevedo, Marcos Antonio Ferreira, Renata Watanabe Costa, Valter Russo, Elisa Russo, Alessandra Mascarello, Cristiano R. W. Guimarães · 2019 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
  10. A simple method for implanting free-floating microdevices into the nervous tissue
    Adam Khalifa, Adebayo A. Eisape, Brian F. Coughlin, Sydney S. Cash · 2021 · Journal of Neural Engineering
  11. Accelerating iterative deconvolution and multiview fusion by orders of magnitude
    Min Yi Guo, Yue Li, Yijun P. Su, Talley J. Lambert, Damian Dalle Nogare, Mark W. Moyle, Leighton H. Duncan, Richard Ikegami, Anthony Santella, Ivan Rey‐Suarez et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  12. Isotropic, aberration-corrected light sheet microscopy for rapid high-resolution imaging of cleared tissue
    Mostafa Aakhte, G.A. Müller, Lennart Roos, Joe Li, Torben Göpel, Kurt R. Weiss, Aleyna M. Diniz, Jan Wenzel, Markus Schwaninger, Tobias Moser et al. · 2025 · Nature Biotechnology
  13. High-Throughput Strategy for Profiling Sequential Section With Multiplex Staining of Mouse Brain
    Siqi Chen, Zhixiang Liu, Anan Li, Hui Gong, Ben Long, Xiangning Li · 2021 · Frontiers in Neuroanatomy
  14. NEATmap: a high-efficiency deep learning approach for whole mouse brain neuronal activity trace mapping
    Weijie Zheng, Huawei Mu, Zhiyi Chen, Jiajun Liu, Debin Xia, Yuxiao Cheng, Qi Jing, Pak-Ming Lau, Jin Tang, Guo‐Qiang Bi et al. · 2024 · National Science Review
  15. Blood flows from the SCN toward the OVLT within a new brain vascular portal pathway
    Ranjan K. Roy, Yifan Yao, Isabella K. Green, Andrew Vieira Aitken, Vinicia C. Biancardi, Rae Silver, Javier Eduardo Stern · 2024 · Science Advances
  16. Unlocking the potential of large-scale 3D imaging with tissue clearing techniques
    Etsuo A. Susaki · 2024 · Microscopy
  17. Enhancing cardiovascular research with whole-organ imaging
    Pamela E. Rios Coronado, Kristy Red‐Horse · 2021 · Current Opinion in Hematology
  18. Of form and function: Early cardiac morphogenesis across classical and emerging model systems
    Bhavana Shewale, Nicole C. Dubois · 2021 · Seminars in Cell and Developmental Biology
  19. Whole‐brain microscopy reveals distinct temporal and spatial efficacy of anti‐Aβ therapies
    Daniel Kirschenbaum, Ehsan Dadgar‐Kiani, Francesca Catto, Fabian F. Voigt, Chiara Trevisan, Oliver Bichsel, Hamid Shirani, K. Peter R. Nilsson, Karl Frontzek, Paolo Paganetti et al. · 2022 · EMBO Molecular Medicine
  20. The serotonergic and alpha-1 adrenergic receptor modulator ACH-000029 ameliorates anxiety-like behavior in a post-traumatic stress disorder model
    Hatylas F. Z de Azevedo, Marcos Antonio Ferreira, Alessandra Mascarello, Pavel Osten, Cristiano R. W. Guimarães · 2019 · Neuropharmacology
  21. Whole-brain signatures of functional connectivity after bidirectional modulation of the dopaminergic system in mice
    Hugo Cruces-Solís, Wiebke Nissen, Boris Ferger, Roberto Arban · 2020 · Neuropharmacology
  22. Enhanced and Unified Anatomical Labeling for a Common Mouse Brain Atlas
    Uree Chon, Daniel J. Vanselow, Keith C. Cheng, Yongsoo Kim · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  23. TGFβ signaling mediates microglial resilience to spatiotemporally restricted myelin degeneration
    Zhu, Keying, Liu, Yun, Min, Jin-Hong, Joshua, Vijay, Lin, Jianing, Li, Yue, Kreutzmann, Judith C., Guo, Yuxi, Xia, Wenlong, Mohammadi, Elyas et al. · 2026 · Nature Neuroscience
  24. Three-Dimensional Imaging of the Vertebral Lymphatic Vasculature and Drainage using iDISCO+ and Light Sheet Fluorescence Microscopy
    Laurent Jacob, José M. Brito, Jean‐Léon Thomas · 2020 · Journal of Visualized Experiments
  25. A 3D atlas of the human developing pancreas to explore progenitor proliferation and differentiation
    Adrian Villalba, Yorick Gitton, Megumi Inoue, Virginie Aïello, Raphaël Blain, Maryne Toupin, Séverine Mazaud‐Guittot, Latif Rachdi, Henrik Semb, Alain Chédotal et al. · 2024 · Diabetologia
  26. 3D light-sheet fluorescence microscopy in preclinical and clinical drug discovery
    Urmas Roostalu, Henrik H. Hansen, Jacob Hecksher‐Sørensen · 2024 · Drug Discovery Today
  27. The Duke Mouse Brain Atlas: MRI and light sheet microscopy stereotaxic atlas of the mouse brain
    Mansour, Harrison, Azrak, Ryan, Cook, James J., Hornburg, Kathryn J., Qi, Yi, Tian, Yuqi, Williams, Robert W., Yeh, Fang-Cheng, White, Leonard E., Johnson, G. Allan · 2025 · Science Advances
  28. The Internal Conduit System of the Swine Inverted Lymph Node
    Laurence Dubreil, Mireille Ledevin, Caroline Hervet, Déborah Ménard, Claire Philippe, François J. Michel, Thibaut Larcher, François Meurens, Nicolas Bertho · 2022 · Frontiers in Immunology
  29. Tissue Clearing and Its Application in the Musculoskeletal System
    Yanjing Zhan, Shiwen Zhang, Songsong Zhu, Nan Jiang · 2023 · ACS Omega
  30. Synaptic proteome changes in the hypothalamus of mother rats
    Edina Brigitta Udvari, Katalin Völgyi, Péter Gulyássy, Diána Dimén, Viktor Kis, János Barna, Éva Rebeka Szabó, Gert Lübec, Gábor D. Juhász, Katalin Adrienna Kékesi et al. · 2017 · Journal of Proteomics
  31. Hippocampal brain‐derived neurotrophic factor determines recruitment of anatomically connected networks after stress in diabetic mice
    Marlena Wosiski‐Kuhn, Mihail Bota, Christina A. Snider, Steven P. Wilson, Kannan Umadevi Venkataraju, Pavel Osten, Alexis M. Stranahan · 2018 · Hippocampus
  32. Deep learning reveals 3D atherosclerotic plaque distribution and composition
    Vanessa Isabell Jurtz, Grethe Skovbjerg, Casper Gravesen Salinas, Urmas Roostalu, Louise Pedersen, Jacob Hecksher‐Sørensen, Bidda Rolin, Michael Nyberg, Martijn van de Bunt, Camilla Ingvorsen · 2020 · Scientific Reports
  33. New Look at RSV Infection: Tissue Clearing and 3D Imaging of the Entire Mouse Lung at Cellular Resolution
    Maxence Frétaud, Delphyne Descamps, Daphné Laubreton, Marie‐Anne Rameix‐Welti, Jean‐François Eléouët, Thibaut Larcher, Marie Galloux, Christelle Langevin · 2021 · Viruses
  34. Host interneurons mediate plasticity reactivated by embryonic inhibitory cell transplantation in mouse visual cortex
    Xiaoting Zheng, Kirstie J. Salinas, Dario X. Figueroa Velez, Taylor Nakayama, Xiaoxiao Lin, Dhruba Banerjee, Xiangmin Xu, Sunil Gandhi · 2021 · Nature Communications
  35. 3D Whole-Brain Imaging Approaches to Study Brain Tumors
    Julián Taranda, Şevin Turcan · 2021 · Cancers
  36. Oxytocin Modulation of Maternal Behavior and Its Association With Immunological Activity in Rats With Cesarean Delivery
    Tong Li, Shuwei Jia, Dan Hou, Xiaoran Wang, Dongyang Li, Yang Liu, Dan Cui, Xiaoyu Liu, Chun-Mei Hou, Ping Wang et al. · 2021 · ASN NEURO
  37. Homologous organization of cerebellar pathways to sensory, motor, and associative forebrain
    Thomas John Pisano, Zahra M. Dhanerawala, Mikhail Kislin, Dariya E Bakshinskaya, Esteban A. Engel, Ethan J. Hansen, Hoag, Austin T, Junuk Lee, Nina L. de Oude, Kannan Umadevi Venkataraju et al. · 2021 · Utrecht University Repository (Utrecht University)
  38. 3D Reconstruction of the Clarified Rat Hindbrain Choroid Plexus
    Paola Perin, Riccardo Rossetti, Carolina Ricci, Daniele Cossellu, Simone Lazzarini, Philipp Bethge, Fabian F. Voigt, Fritjof Helmchen, Laura Batti, Ivana Gantar et al. · 2021 · Frontiers in Cell and Developmental Biology
  39. Tissue clearing and 3D imaging – putting immune cells into context
    Julian I. Hofmann, Selina Jessica Keppler · 2021 · Journal of Cell Science
  40. Insulin-like growth factor I and its binding protein-3 are regulators of lactation and maternal responsiveness
    András H. Lékó, Melinda Cservenák, Éva Rebeka Szabó, János Hanics, Alán Alpár, Árpád Dobolyi · 2017 · Scientific Reports
  41. Cardiac autonomic neuropathy (CAN) in type-1 diabetes mellitus patients and its association with the duration of disease and glycemic control.
    Haji Khan Khoharo, Shuaib Ansari, Imran Shaikh, Fatima Qureshi · 2009 · PubMed
  42. Three-dimensional visualization of intramuscular innervation in intact adult skeletal muscle by a modified iDISCO method
    Yusha Li, Jianyi Xu, Jingtan Zhu, Tingting Yu, Dan Yan Zhu · 2020 · Neurophotonics
  43. An optimized tissue clearing protocol for rat brain labeling, imaging, and high throughput analysis
    Audrey Branch, Daniel Jacob Tward, Anna C. Kolstad, Vyash Pulyadi, Joshua T Vogelstein, Zhuhao Wu, Michela Gallagher · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  44. StereoMate: 3D Stereological Automated Analysis of Biological Structures
    Steven Jon West, Damien Bonboire, David Bennett · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  45. Transient nicotine exposure in early adolescent male mice freezes their dopamine circuits in an immature state
    Reynolds, Lauren M., Gulmez, Aylin, Fayad, Sophie L., Campos, Renan Costa, Rigoni, Daiana, Nguyen, Claire, Le Borgne, Tinaïg, Topilko, Thomas, Rajot, Domitille, Franco, Clara et al. · 2024 · Nature Communications
  46. Whole‐Tumor Clearing and Imaging of Intratumor Microbiota in Three Dimensions with miCDaL Strategy
    Yuezhou Wang, Zile Jiang, Kai Zhang, Huimin Tang, Guimei Wang, Jinshan Gao, Guanghui He, Baoyue Liang, Li Li, Chaoyong James Yang et al. · 2024 · Advanced Science
  47. Suppression of binge alcohol drinking by an inhibitory neuronal ensemble in the mouse medial orbitofrontal cortex
    Pablo Giménez‐Gómez, Timmy Le, Max Zinter, P Githure M'angale, Violeta Durán‐Laforet, Timothy G. Freels, Rebecca G. Pavchinskiy, Susanna Molas, Dorothy P. Schafer, Andrew R. Tapper et al. · 2025 · Nature Neuroscience
  48. Neural function of Netrin-1 in precancerous lesions of the pancreas
    Hiba Haidar, Anaïs Bellon, Karen Sleiman, Mélanie Hocine, Nicolas Rama, Nicolas Gadot, Darren R. Carpizo, Patrick Mehlen, Fanny Mann · 2025 · Nature Communications
  49. A neuronal architecture underlying autonomic dysreflexia
    Jan Elaine Soriano, Rémi Hudelle, Loïs Mahe, Matthieu Gautier, Alan Yue Yang Teo, Michael A. Skinnider, Achilleas Laskaratos, Steven Ceto, Claudia Kathe, Thomas Haynes Hutson et al. · 2025 · Nature
  50. Voxel-Based Statistical Analysis of 3D Immunostained Tissue Imaging
    Michel Erminio Vandenberghe, Nicolas Souedet, Anne‐Sophie Hérard, Anne‐Marie Ayral, Florent Letronne, Yaël Balbastre, Elmahdi Sadouni, Philippe Hantraye, Marc Dhénain, Frédérique Frouin et al. · 2018 · Frontiers in Neuroscience
  51. Neurotransmission through dopamine D1 receptors is required for aversive memory formation and Arc activation in the cerebral cortex
    Nae Saito, Kazuki Tainaka, Tom Macpherson, Takatoshi Hikida, Shun Yamaguchi, Toshikuni Sasaoka · 2020 · Neuroscience Research
  52. Unbiased analysis of obesity related, fat depot specific changes of adipocyte volumes and numbers using light sheet fluorescence microscopy
    Natalie Theobalt, Isabel Hofmann, Sonja Fiedler, Simone Renner, Georg Dhom, Annette Feuchtinger, Axel Karl Walch, Martin Hrabě de Angelis, Eckhard Wolf, Rüdiger Wanke et al. · 2021 · PLoS ONE
  53. An arginine-rich nuclear localization signal (ArgiNLS) strategy for streamlined image segmentation of single cells
    Eric R. Szelenyi, J. Navarrete, Alexandria D. Murry, Yizhe Y. Zhang, Kasey S. Girven, Lauren Kuo, Marcella M. Cline, Mollie X. Bernstein, Mariia Burdyniuk, Bryce Bowler et al. · 2024 · Proceedings of the National Academy of Sciences of the United States of America
  54. Progressive tau aggregation does not alter functional brain network connectivity in seeded hTau.P301L mice
    Jan R. Detrez, Inès R. H. Ben-Nejma, Kristof Van Kolen, Debby Van Dam, Peter Paul De Deyn, Erik Fransén, Marleen Verhoye, Jean‐Pierre Timmermans, Rony Nuydens, Annemie Van der Linden et al. · 2020 · Neurobiology of Disease
  55. C-ECi: a CUBIC-ECi combined clearing method for three-dimensional follicular content analysis in the fish ovary†
    Manon Lesage, Manon Thomas, Jérôme Bugeon, Adèle Branthonne, Stéphanie Gay, Emilie Cardona, Marie Haghebaert, Fabrice Mahé, Julien Bobe, Violette Thermes · 2020 · Biology of Reproduction
  56. Light Sheet Microscopy Using FITC-Albumin Followed by Immunohistochemistry of the Same Rehydrated Brains Reveals Ischemic Brain Injury and Early Microvascular Remodeling
    Ayan Mohamud Yusuf, Nina Hagemann, Sarah Schulten, Olessja Rausch, Kristina Wagner, Tanja Hussner, Yachao Qi, Matthias Totzeck, Christoph Kleinschnitz, Anthony Squire et al. · 2021 · Frontiers in Cellular Neuroscience
  57. Regional Targeting of Bladder and Urethra Afferents in the Lumbosacral Spinal Cord of Male and Female Rats: A Multiscale Analysis
    J. P. Fuller-Jackson, Peregrine B. Osborne, Janet R. Keast · 2021 · eNeuro
  58. Rethinking the Approach to Preclinical Models of Anorexia Nervosa
    Marie François, Lori M. Zeltser · 2022 · Current Psychiatry Reports
  59. Translational rapid ultraviolet-excited sectioning tomography for whole-organ multicolor imaging with real-time molecular staining
    Wentao Yu, Lei Kang, Victor T. C. Tsang, Yan Zhang, Ivy H. M. Wong, Terence T. W. Wong · 2022 · eLife
  60. Functional Neuronal Topography: A Statistical Approach to Micro Mapping Neuronal Location
    Angela Jacques, Alison Wright, Nicholas Chaaya, Anne Overell, Hadley Creighton Bergstrom, Craig G. McDonald, Andrew R. Battle, Luke R. Johnson · 2018 · Frontiers in Neural Circuits
  61. Serial Multiphoton Tomography and Analysis of Volumetric Images of the Mouse Brain
    Denise M. O. Ramirez, Apoorva D. Ajay, Mark P. Goldberg, Julian P. Meeks · 2019 · Neuromethods
  62. An orthogonal differentiation platform for genomically programming stem cells, organoids, and bioprinted tissues
    Mark A. Skylar‐Scott, Jeremy Y. Huang, Aric Lu, Alex H. M. Ng, Tomoya Duenki, Lucy L. Nam, Sarita Damaraju, George McDonald Church, Jennifer A. Lewis · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  63. Neuroinvasion and anosmia are independent phenomena upon infection with SARS-CoV-2 and its variants
    Guilherme Dias de Melo, Victoire Perraud, Flavio Alvarez, Alba Vieites Prado, Seonhee Kim, Lauriane Kergoat, Anthony Coléon, Bettina Salome Trüeb, Magali Tichit, Aurèle Piazza et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  64. Hydrophobic and Hydrogel-Based Methods for Passive Tissue Clearing
    Frank L. Jalufka, Sun Min, Madison E. Platt, Anna L. Pritchard, Theodore E. Margo, Alexandra O. Vernino, Megan A. Kirchhoff, Ryan T. Massopust, Dylan A. McCreedy · 2022 · Methods in molecular biology
  65. Anatomy of the complete mouse eye vasculature explored by light-sheet fluorescence microscopy exposes subvascular-specific remodeling in development and pathology
    Luc Krimpenfort, Maria Garcia-Collado, Tom Van Leeuwen, Filippo Locri, Anna‐Liisa Luik, Antonio Queiro-Palou, Shigeaki Kanatani, Helder André, Per Uhlén, Lars Jakobsson · 2023 · Experimental Eye Research
  66. Forebrain Eml1 depletion reveals early centrosomal dysfunction causing subcortical heterotopia
    Donia Zaidi, Kaviya Chinnappa, Berfu Nur Yiğit, Valeria Viola, Carmen Cifuentes-Díaz, Ammar Jabali, Ana Uzquiano, Emilie Lemesre, Franck Perez, Julia Ladewig et al. · 2024 · The Journal of Cell Biology
  67. Target inhibition of NAT10-mediated ac4C modification prevents seizure behavior in mice
    Aomei Zhang, Jingwen Yang, Meng Wang, Yujia Li, Tao Hu, Jialin Xie, Yang Xu, Wenyu Cao · 2025 · Neuropharmacology
  68. A SMARTTR workflow for multi-ensemble atlas mapping and brain-wide network analysis
    Michelle Jin, Simon Ogundare, Marcos Lanio, Sophia Sorid, Alicia Whye, Sofia Leal Santos, Alessandra Franceschini, Christine Ann Denny · 2024 · eLife
  69. In vivo transcriptomic, functional, circuit-based, and translational analyses of enteric neurons
    Claire J Millett, James J. Shaver, Bernadette Bracken, Sunny J. Jones, Robert J. Lovelett, Dave A Rubinow, R Singhal, Celia Charlton, Nadine Piazza, Quinn Hauck et al. · 2025 · Cell
  70. Protocol for tissue clearing and 3D analysis of dopamine neurons in the developing mouse midbrain
    Youri Adolfs, Divya D. A. Raj, Sara Brignani, R. Jeroen Pasterkamp · 2021 · STAR Protocols
  71. Age, sex, and apolipoprotein E isoform alter contextual fear learning, neuronal activation, and baseline DNA damage in the hippocampus
    Sydney Weber Boutros, Benjamin Zimmerman, Sydney C. Nagy, Vivek K. Unni, Jacob Raber · 2023 · Molecular Psychiatry
  72. Constitutive and conditional deletion reveals distinct phenotypes driven by developmental versus neurotransmitter actions of the neuropeptide PACAP
    Dana Bakalar, Oksana Gavrilova, Sunny Zhihong Jiang, Hai‐ying Zhang, Snehashis Roy, Sarah K. Williams, Naili Liu, Stephen Wisser, Ted Björn Usdin, Lee E. Eiden · 2023 · Journal of Neuroendocrinology
  73. Neuroanatomy of lymphoid organs: Lessons learned from whole‐tissue imaging studies
    Ying Cao, Hongjie Chen, Jing Hui Yang · 2023 · European Journal of Immunology
  74. A rapid workflow for neuron counting in combined light sheet microscopy and magnetic resonance histology
    Tian, Yuqi, Johnson, G. Allan, Williams, Robert W., White, Leonard E. · 2023 · Frontiers in Neuroscience
  75. Factor H’s Control of Complement Activation Emerges as a Significant and Promising Therapeutic Target for Alzheimer’s Disease Treatment
    Iris Hasantari, Nabil Nicolas, Philippe Alzieu, Léa Leval, Andree Shalabi, Sylvain Grolleau, Virginie Dinet · 2024 · International Journal of Molecular Sciences
  76. A prenatal window for enhancing spatial resolution of cortical barrel maps
    Mar Aníbal-Martínez, Lorenzo Puche-Aroca, Elena Pérez-Montoyo, Gabriele Pumo, M. Pilar Madrigal, Luis Miguel Rodríguez-Malmierca, Francisco J. Martini, Filippo M. Rijli, Guillermina López‐Bendito · 2025 · Nature Communications
  77. Non-imaged based method for matching brains in a common anatomical space for cellular imagery
    Maëllie Midroit, Marc Thévenet, Arnaud Fournel, Joëlle Sacquet, Moustafa Bensafi, Marine Breton, Laura Chalençon, Matthias Cavelius, Anne Didier, Nathalie Mandairon · 2018 · Journal of Neuroscience Methods
  78. Tyrosine-hydroxylase immunoreactivity in the mouse transparent brain and adrenal glands
    David Godefroy, William H. Rostène, Youssef Anouar, Annabelle Reaux-Le Goazigo · 2018 · Journal of Neural Transmission
  79. Immature mDA neurons ameliorate motor deficits in a 6-OHDA Parkinson's disease mouse model and are functional after cryopreservation
    Dominique Leitner, Mahesh Ramamoorthy, Marion Déjosez, Thomas P. Zwaka · 2019 · Stem Cell Research
  80. Clearing techniques for visualizing the nervous system in development, injury, and disease
    Demisha D.L. Porter, Paul D. Morton · 2020 · Journal of Neuroscience Methods
  81. Leveraging Neural Networks in Preclinical Alcohol Research
    Lauren C. Smith, Adam Kimbrough · 2020 · Brain Sciences
  82. COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains
    Yuheng Cai, Xuying Zhang, Chen Li, H. Troy Ghashghaei, Alon Greenbaum · 2023 · Cell Reports Methods
  83. Parallel Organization of Cerebellar Pathways to Sensory, Motor, and Associative Forebrain
    Thomas John Pisano, Zahra M. Dhanerawala, Mikhail Kislin, Dariya E Bakshinskaya, Esteban A. Engel, Junuk Lee, Nina L. de Oude, Ethan J. Hansen, Kannan Umadevi Venkataraju, Freek E. Hoebeek et al. · 2021 · SSRN Electronic Journal
  84. Volumetric ultrasound localization microscopy of the whole brain microvasculature
    Baptiste Heiles, Arthur Chavignon, Antoine Bergel, Vincent Hingot, Hicham Serroune, David Maresca, Sophie Pezet, Mathieu Pernot, Mickaël Tanter, Olivier Couture · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  85. Brain-wide mapping of oligodendrocyte organization and oligodendrogenesis across the murine lifespan
    Yu Kang T. Xu, Abigail Bush, Ephraim Musheyev, Anya A. Kim, Sen Zhang, Jaime Eugenin von Bernhardi, Jeremias Sulam, Dwight E. Bergles · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  86. Whole-brain in situ mapping of neuronal activation in Drosophila during social behaviors and optogenetic stimulation
    Kiichi Watanabe, Hui Chiu, David J. Anderson · 2023 · eLife
  87. Aggression experience and observation promote shared behavioral and neural changes
    Jorge Iravedra, Eartha Mae Guthman, Lenca Cuturela, Edgar J. Ocasio-Arce, Jonathan W. Pillow, Annegret L. Falkner · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  88. Molecular diversity and migration of GABAergic neurons in the developing ventral midbrain
    Özge Düdükcü, Divya D. A. Raj, Lieke L. van de Haar, Laurens M. Grossouw, Louisa E. Linders, Oxana Garritsen, Youri Adolfs, Nicky C.H. van Kronenburg, Mark H. Broekhoven, Troy H W Kapteijns et al. · 2024 · iScience
  89. Skin-iDISCO+: An optimized tissue-clearing and labeling protocol for morphometric analysis of human cutaneous vasculature
    L. Pechtimaldjian, Muriel Cario, Jérémie Teillon, Sébastien Marais, Sébastien Dupichaud, Hamid Reza Rezvani, François Moisan · 2024 · STAR Protocols
  90. Generation and characterisation of a humanised GLP-1 receptor mouse model for translational drug development
    Nina Sonne, Micaela Roque, Line Fisker Zachariassen, Trine Porsgaard, Susanne Elisabeth Pors, Michele Cavalera, Christopher Jones, Olivia Osborn, Ditte Dencker Thorbek, Malene Lundgaard Riis et al. · 2026 · EBioMedicine
  91. Targeting calcineurin induces cardiomyocyte proliferation in adult mice
    Nicholas T. Lam, Ngoc Uyen Nhi Nguyen, Mahmoud Salama Ahmed, Ching‐Cheng Hsu, Pamela E. Rios Coronado, Shujuan Li, Ivan Menendez-Montes, Suwannee Thet, Waleed M. Elhelaly, Feng Xiao et al. · 2022 · Nature Cardiovascular Research
  92. Fluorescent transgenic mouse models for whole-brain imaging in health and disease
    Adrian Arias, Linus Manubens-Gil, Mara Dierssen · 2022 · Frontiers in Molecular Neuroscience
  93. Shinbaro2 enhances axonal extension beyond the glial scar for functional recovery in rats with contusive spinal cord injury
    Jin Young Hong, Junseon Lee, Hyun Kim, Changhwan Yeo, Wan‐Jin Jeon, Yoon Jae Lee, In‐Hyuk Ha · 2023 · Biomedicine & Pharmacotherapy
  94. Corticothalamic neurons in motor cortex have a permissive role in motor execution
    Lina Marcela Carmona, Anders Nelson, Lin T. Tun, An Kim, Rani Shiao, Michael D. Kissner, Vilas Menon, Rui M. Costa · 2025 · Nature Communications
  95. A Review of Intrinsic Optical Imaging Serial Blockface Histology (ICI-SBH) for Whole Rodent Brain Imaging
    Joël Lefebvre, Patrick Delafontaine-Martel, Frédéric Lesage · 2019 · Photonics
  96. Chemical Sectioning for Immunofluorescence Imaging
    Ruixi Chen, Hongfu Zhou, Anan Li, Xiaofeng Cheng, Xiaoxiang Liu, Fei Huang, Yu Wang, Yurong Liu, Hui Gong, Xiuli Liu et al. · 2021 · Analytical Chemistry
  97. Automated high-throughput mouse transsynaptic viral tracing using iDISCO+ tissue clearing, light-sheet microscopy, and BrainPipe
    Thomas John Pisano, Austin T. Hoag, Zahra M. Dhanerawala, Sara Rose Guariglia, Caroline Jung, Henk‐Jan Boele, Kelly M. Seagraves, Jessica L. Verpeut, Samuel S.‐H. Wang · 2022 · STAR Protocols
  98. Human HepaRG liver spheroids: cold storage protocol and study on pyridinium oxime-induced hepatotoxicity in vitro
    Gabriele Horn, Tamara Kranawetvogl, Harald John, Carlotta Weigel, Ursula Rauen, Franz Worek, Timo Wille · 2022 · Chemico-Biological Interactions
  99. Q&A: How can advances in tissue clearing and optogenetics contribute to our understanding of normal and diseased biology?
    Alon Greenbaum, Min Jee Jang, Collin Challis, Viviana Gradinaru · 2017 · BMC Biology
  100. Implicit associations to infant cry: Genetics and early care experiences influence caregiving propensities
    Vincenzo Paolo Senese, Atiqah Azhari, Kazuyuki Shinohara, Hirokazu Doi, Paola Venuti, Marc H. Bornstein, Gianluca Esposito · 2018 · Hormones and Behavior