Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes

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1. Local sympathetic innervations modulate the lung innate immune responses
   Tingting Liu, Lu Yang, Xiangli Han, Xiaofan Ding, Jiali Li, Jing Hui Yang · 2020 · Science Advances
2. Reciprocal activity of AgRP and POMC neurons governs coordinated control of feeding and metabolism
   Alain J. De Solís, Almudena Del Río-Martín, Jan Radermacher, Weiyi Chen, Lukas Steuernagel, Corinna A. Bauder, Fynn R. Eggersmann, Donald A. Morgan, Cremer Anna Lena, Michael W. Sue et al. · 2024 · Nature Metabolism
3. Whole-mouse clearing and imaging at the cellular level with vDISCO
   Cai, Ruiyao, Kolabas, Zeynep Ilgin, Pan, Chenchen, Mai, Hongcheng, Zhao, Shan, Kaltenecker, Doris, Voigt, Fabian F., Molbay, Muge, Ohn, Tzu-lun, Vincke, Cécile et al. · 2023 · Nature Protocols
4. A neuroimmune circuit mediates cancer cachexia-associated apathy
   Xiaoyue Aelita Zhu, Sarah Starosta, Miriam Ferrer, Junxiao Hou, Quentin Chevy, Federica Lucantonio, Rodrigo Muñoz-Castañeda, Fengrui Zhang, Kaikai Zang, Xiang Zhao et al. · 2025 · Science
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   Tonny Lagerweij, Sophie A. Dusoswa, Adrian Negrean, Esther M.L van Kesteren-Hendrikx, Helga E. de Vries, Jeroen Kole, Juan Jesús García-Vallejo, Huibert D. Mansvelder, William Peter Vandertop, David P. Noske et al. · 2017 · Angiogenesis
6. Ventral arkypallidal neurons inhibit accumbal firing to promote reward consumption
   Yvan M. Vachez, Jessica R. Tooley, Kavitha Abiraman, Bridget A. Matikainen‐Ankney, Eric Casey, Tom Earnest, Leana M. Ramos, Hanna Silberberg, Elizabeth Alexandra Godynyuk, Olivia Uddin et al. · 2021 · Nature Neuroscience
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   Katrina Y. Choe, Richard A. I. Bethlehem, Martin Safrin, Hongmei Dong, Elena Salman, Ying Li, Valery Grinevich, Peyman Golshani, Laura A. DeNardo, Olga Peñagarikano et al. · 2021 · Neuron
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   Xinhe Zheng, Boli Wu, Yuejia Liu, Sean Simmons, Kwanho Kim, Grace S. Clarke, Abdullah Ashiq, Joshua C. Park, Jiwen Li, Zhilin Wang et al. · 2024 · Cell
9. Whole-brain spatial transcriptional analysis at cellular resolution
   Shigeaki Kanatani, Judith C. Kreutzmann, Yue Li, Zoe Elizabeth West, Lea Lydolph Larsen, Danai Vougesi Nikou, Ilse Eidhof, Abigail Walton, Songbai Zhang, Leslie A. Kirby et al. · 2024 · Science
10. Dorsal root ganglia control nociceptive input to the central nervous system
    Han Hao, Rosmaliza Binti Ramli, Caixue Wang, Chao Liu, Shihab S. Shah, Pierce N. Mullen, Varinder K. Lall, Frederick Jones, Jicheng Shao, Hailin Zhang et al. · 2023 · PLoS Biology
11. Decellularization and antibody staining of mouse tissues to map native extracellular matrix structures in 3D
    Mayorca-Guiliani, Alejandro E, Willacy, Oliver, Madsen, Chris D., Rafaeva, Maria, Elisabeth Heumüller, Stefanie, Bock, Felix, Sengle, Gerhard, Koch, Manuel, Imhof, Thomas, Zaucke, Frank et al. · 2019 · Nature Protocols
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    Qi Wang, Shan Zhang, Tingting Liu, Huanhuan Wang, Kai‐Li Liu, Qiujun Wang, Wenwen Zeng · 2018 · Cell Reports
13. Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution
    Hao Wang, Qingyuan Zhu, Lufeng Ding, Yan Xia Shen, Chao‐Yu Yang, Fang Xu, Chang Shu, Yujie Guo, Zhiwei Xiong, Qing‐Hong Shan et al. · 2019 · National Science Review
14. An Optimized Mouse Brain Atlas for Automated Mapping and Quantification of Neuronal Activity Using iDISCO+ and Light Sheet Fluorescence Microscopy
    Johanna Perens, Casper Gravesen Salinas, Jacob Lercke Skytte, Urmas Roostalu, Anders Bjorholm Dahl, Tim B. Dyrby, Franziska Wichern, Pernille Barkholt, Niels Vrang, Jacob Jelsing et al. · 2020 · Neuroinformatics
15. Cross-modal coherent registration of whole mouse brains
    Lei Qu, Yuanyuan Li, Peng Xie, Lijuan Liu, Yimin Wang, Jun Wu, Yu Liu, Tao Wang, Longfei Li, Kaixuan Guo et al. · 2021 · Nature Methods
16. Kisspeptin/Neurokinin B/Dynorphin (KNDy) cells as integrators of diverse internal and external cues: evidence from viral-based monosynaptic tract-tracing in mice
    Moore, Aleisha M., Coolen, Lique M., Lehman, Michael N. · 2019 · Scientific Reports
17. Imaging the dynamic recruitment of monocytes to the blood–brain barrier and specific brain regions during Toxoplasma gondii infection
    Christine A. Schneider, Dario X. Figueroa Velez, Ricardo Azevedo, Evelyn M. Hoover, Cuong J. Tran, Chelsie Lo, Omid Vadpey, Sunil Gandhi, Melissa B. Lodoen · 2019 · Proceedings of the National Academy of Sciences
18. Ultrafast immunostaining of organ-scale tissues for scalable proteomic phenotyping
    Dae Hee Yun, Young-Gyun Park, Jae Hun Cho, Lee D. Kamentsky, Nicholas B. Evans, Alex Albanese, Katherine Xie, Justin Swaney, Chang Ho Sohn, Yuxuan Tian et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
19. Optical clearing for multiscale biological tissues
    Tingting Yu, Yisong Qi, Hui Gong, Qingming Luo, Dan Yan Zhu · 2017 · Journal of Biophotonics
20. Accurate determination of marker location within whole-brain microscopy images
    Adam L. Tyson, Mateo Vélez‐Fort, Charly V. Rousseau, Lee Cossell, Chryssanthi Tsitoura, Stephen C. Lenzi, Horst Andreas Obenhaus, Federico Claudi, Tiago Branco, Troy W. Margrie · 2022 · Scientific Reports
21. A 3D atlas of the dynamic and regional variation of pancreatic innervation in diabetes
    A. Alvarsson, M. Jimenez-Gonzalez, Rosemary Li, Carolina Rosselot, N. Tzavaras, Zhu-Hao Wu, A. Stewart, A. Garcia-Ocaña, S. Stanley · 2020 · Science Advances
22. A 3D adult zebrafish brain atlas (AZBA) for the digital age
    Justin W. Kenney, Patrick E. Steadman, Olivia Young, Meng Ting Shi, Maris Polanco, Saba Dubaishi, Kristopher Covert, Thomas Mueller, Paul W. Frankland · 2021 · eLife
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    Thomas Topilko, Silvina L. Diaz, Catarina M. Pacheco, Florine Verny, Charly V. Rousseau, Christoph Kirst, Charlotte Deleuze, Patrícia Gaspar, Nicolas Renier · 2021 · Neuron
24. Mesoscale connectomics
    Hongkui Zeng · 2018 · Current Opinion in Neurobiology
25. Self-organizing models of human trunk organogenesis recapitulate spinal cord and spine co-morphogenesis
    Simona Gribaudo, Rémi Robert, Björn van Sambeek, Camil Mirdass, Anna Lyubimova, Kamal Bouhali, Julien Ferent, Xavier Morin, Alexander van Oudenaarden, Stéphane Nedelec · 2023 · Nature Biotechnology
26. High-resolution ultramicroscopy of the developing and adult nervous system in optically cleared Drosophila melanogaster
    Marko Pende, Klaus Becker, Martina Wanis, Saiedeh Saghafi, Rashmit Kaur, Christian Hahn, N Pende, Massih Foroughipour, Thomas Hummel, Hans‐Ulrich Dodt · 2018 · Nature Communications
27. Panicle-Shaped Sympathetic Architecture in the Spleen Parenchyma Modulates Antibacterial Innate Immunity
    Xiaofan Ding, Huanhuan Wang, Xinmin Qian, Xiangli Han, Lu Yang, Ying Cao, Qi Wang, Jing Hui Yang · 2019 · Cell Reports
28. Advances in Ex Situ Tissue Optical Clearing
    Paweł Matryba, Leszek Kaczmarek, Jakub Gołąb · 2019 · Laser & Photonics Review
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    Matthew B. Veldman, Chang Sin Park, Charles M. Eyermann, Jason Y. Zhang, Elizabeth Zuniga-Sanchez, Arlene A. Hirano, Tanya L. Daigle, Nicholas N. Foster, Muye Zhu, Peter Langfelder et al. · 2020 · Neuron
30. The Parental Brain
    Michael Numan · 2020
31. Universal autofocus for quantitative volumetric microscopy of whole mouse brains
    Ludovico Silvestri, Marie Caroline Müllenbroich, Irene Costantini, Antonino Paolo Di Giovanna, Giacomo Mazzamuto, Alessandra Franceschini, Dominik Kutra, Anna Kreshuk, Curzio Checcucci, L. O. Toresano et al. · 2021 · Nature Methods
32. Neuroinvasion and anosmia are independent phenomena upon infection with SARS-CoV-2 and its variants
    Guilherme Dias de Melo, Victoire Perraud, Flavio Alvarez, Alba Vieites Prado, Seonhee Kim, Lauriane Kergoat, Anthony Coléon, Bettina Salome Trüeb, Magali Tichit, Aurèle Piazza et al. · 2023 · Nature Communications
33. Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples
    Nikita Vladimirov, Fabian F. Voigt, Thomas Naert, G. R. Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin et al. · 2024 · Nature Communications
34. RETRACTED: Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers
    G. Stefano Brigidi, Michael G.B. Hayes, Nathaniel P. Delos Santos, Andrea L. Hartzell, Lorane Texari, Pei-Ann Lin, Anna Bartlett, Joseph R. Ecker, Christopher W. Benner, Sven Heinz et al. · 2019 · Cell · Retracted
35. Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations
    Jacob T. Martin, Christopher A. Cottrell, Aleksandar Antanasijevic, Diane G. Carnathan, Benjamin James Cossette, Chiamaka A. Enemuo, Etse H. Gebru, Yury Choe, Federico Viviano, Stephanie Fischinger et al. · 2020 · npj Vaccines
36. 3D microscopy and deep learning reveal the heterogeneity of crown-like structure microenvironments in intact adipose tissue
    Junlong Geng, Xiaohui Zhang, Suma Prabhu, Sayyed Hamed Shahoei, Erik Russell Nelson, Kelly Scott Swanson, Mark A. Anastasio, Andrew M. Smith · 2021 · Science Advances
37. An Amygdala Circuit Mediates Experience-Dependent Momentary Arrests during Exploration
    Paolo Botta, Akira Fushiki, Ana Mafalda Vicente, Luke Alexander Hammond, Alice C. Mosberger, Charles R. Gerfen, Darcy S. Peterka, Rui M. Costa · 2020 · Cell
38. Whole-brain activation signatures of weight-lowering drugs
    Henrik H. Hansen, Johanna Perens, Urmas Roostalu, Jacob Lercke Skytte, Casper Graversen Salinas, Pernille Barkholt, Ditte Dencker Thorbek, Kristoffer T.G. Rigbolt, Niels Vrang, Jacob Jelsing et al. · 2021 · Molecular Metabolism
39. Spatiotemporal characterization of cellular tau pathology in the human locus coeruleus–pericoerulear complex by three-dimensional imaging
    Abris Gilvesy, Evelina Husén, Zsófia Maglóczky, Orsolya Salamonné Mihály, Tibor Hortobágyi, Shigeaki Kanatani, Helmut Heinsen, Nicolas Renier, Tomas G. M. Hökfelt, Jan Mulder et al. · 2022 · Acta Neuropathologica
40. ABBA+BraiAn, an integrated suite for whole-brain mapping, reveals brain-wide differences in immediate-early genes induction upon learning
    Nicolas Chiaruttini, Carlo Castoldi, Linda Maria Requie, Carmen Camarena-Delgado, Beatrice Dal Bianco, Johannes Gräff, Arne Seitz, Bianca A. Silva · 2025 · Cell Reports
41. Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy
    Claudia Prahst, Parham Ashrafzadeh, Thomas Mead, Ana M. Figueiredo, Karen Chang, Douglas S. Richardson, Lakshmi Venkaraman, Mark Richards, Ana Martins Russo, Kyle Harrington et al. · 2020 · eLife
42. Scalable tissue labeling and clearing of intact human organs
    Hongcheng Mai, Zhouyi Rong, Shan Zhao, Ruiyao Cai, Hanno Steinke, Ingo Bechmann, Ali Ertürk · 2022 · Nature Protocols
43. Time-tagged ticker tapes for intracellular recordings
    Ding-Chang Lin, Xiuyuan Li, Eric M. Moult, Pojeong Park, Benjamin Tang, Hao Shen, J. Grimm, Natalie Falco, Bill Z. Jia, D. Baker et al. · 2021 · bioRxiv
44. The neuroimmune connectome in health and disease
    Michael A. Wheeler, Francisco Javier Quintana · 2025 · Nature
45. A Guide to the Generation of a 6-Hydroxydopamine Mouse Model of Parkinson’s Disease for the Study of Non-Motor Symptoms
    Débora Masini, Carina Plewnia, Maëlle Bertho, Nicolas Scalbert, Vittorio Caggiano, Gilberto Fisone · 2021 · Biomedicines
46. Tissue clearing and 3D imaging in developmental biology
    Alba Vieites Prado, Nicolas Renier · 2021 · Development
47. Overloaded Adeno-Associated Virus as a Novel Gene Therapeutic Tool for Otoferlin-Related Deafness
    Vladan Rankovic, Christian Vogl, Nele Marie Dörje, Iman Bahader, Carlos J. Duque-Afonso, Anupriya Thirumalai, Thomas Weber, Kathrin Kusch, Nicola Strenzke, Tobias Moser · 2021 · Frontiers in Molecular Neuroscience
48. Circuit asymmetries underlie functional lateralization in the mouse auditory cortex
    Robert B. Levy, Tiemo Marquarding, Ashlan P. Reid, Christopher M. Pun, Nicolas Renier, Hysell V. Oviedo · 2019 · Nature Communications
49. Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mouse Visual Cortex
    Jun Ho Song, Woochul Choi, You-Hyang Song, Jae‐Hyun Kim, Daun Jeong, Seung‐Hee Lee, Se‐Bum Paik · 2020 · Cell Reports
50. Effect of the dopamine stabilizer (-)-OSU6162 on potentiated incubation of opioid craving after electric barrier-induced voluntary abstinence
    Ida Fredriksson, Sarah V. Applebey, Angelica M. Minier-Toribio, Aniruddha Shekara, Jennifer M. Bossert, Yavin Shaham · 2020 · Neuropsychopharmacology
51. EyeCi: Optical clearing and imaging of immunolabeled mouse eyes using light-sheet fluorescence microscopy
    Yoshiyuki Henning, Christin Osadnik, Erich Pascal Malkemper · 2018 · Experimental Eye Research
52. Tissue clearing and imaging methods for cardiovascular development
    Hana Kolesová, Veronika Olejníčková, Alena Kvasilová, Martina Gregorovičová, David Sedmera · 2021 · iScience
53. An entorhinal-visual cortical circuit regulates depression-like behaviors
    Jian Lu, Zhouzhou Zhang, Xinxin Yin, Yingjun Tang, Runan Ji, Han Chen, Yu Guang, Xue Gong, Yong He, Wei Zhou et al. · 2022 · Molecular Psychiatry
54. Merged magnetic resonance and light sheet microscopy of the whole mouse brain
    G. Allan Johnson, Yuqi Tian, David George Ashbrook, Gary Price Cofer, James J. H. Cook, James C. Gee, Adam Hall, Kathryn J. Hornburg, Catherine Cook Kaczorowski, Yi Peng Qi et al. · 2023 · Proceedings of the National Academy of Sciences
55. Hypothalamic deep brain stimulation augments walking after spinal cord injury
    Newton Cho, Jordan W. Squair, Viviana Aureli, Nicholas D. James, Léa Bole-Feysot, Inssia Dewany, Nicolas Hankov, Laetitia Baud, Anna Leonhartsberger, Kristina Sveistyte et al. · 2024 · Nature Medicine
56. 3D Imaging and Quantitative Analysis of Vascular Networks: A Comparison of Ultramicroscopy and Micro-Computed Tomography
    Jeremy Epah, Katalin Pálfi, Franziska Luise Dienst, Pedro Felipe Malacarne, Rolf Bremer, Michael Salamon, Sandeep Kumar, Hanjoong Jo, Christoph Schürmann, Ralf Peter Brandes · 2018 · Theranostics
57. Activating an anterior nucleus gigantocellularis subpopulation triggers emergence from pharmacologically-induced coma in rodents
    Sijia Gao, Alex Proekt, Nicolas Renier, Diany Paola Calderon, Donald W. Pfaff · 2019 · Nature Communications
58. Quantitative whole-brain 3D imaging of tyrosine hydroxylase-labeled neuron architecture in the mouse MPTP model of Parkinson's disease
    Urmas Roostalu, Casper Bo Gravesen Salinas, Ditte Dencker Thorbek, Jacob Lercke Skytte, Katrine Fabricius, Pernille Barkholt, Linu Mary John, Vanessa Isabell Jurtz, Lotte Bjerre Knudsen, Jacob Jelsing et al. · 2019 · Disease Models & Mechanisms
59. Emerging imaging methods to study whole-brain function in rodent models
    Marija Markicevic, Iurii Savvateev, Christina Grimm, Valerio Zerbi · 2021 · Translational Psychiatry
60. Solving brain circuit function and dysfunction with computational modeling and optogenetic fMRI
    Jin Hyung Lee, Qin Liu, Ehsan Dadgar‐Kiani · 2022 · Science
61. Identifying Cellular and Molecular Mechanisms for Magnetosensation
    Benjamin L Clites, Jonathan T. Pierce-Shimomura · 2017 · Annual Review of Neuroscience
62. Brain-Wide Projections and Differential Encoding of Prefrontal Neuronal Classes Underlying Learned and Innate Threat Avoidance
    Michael W. Gongwer, Cassandra B. Klune, João Couto, Benita Jin, Alexander S. Enos, Rita Chen, Drew Friedmann, Laura A. DeNardo · 2023 · Journal of Neuroscience
63. NPAS4 recruits CCK basket cell synapses and enhances cannabinoid-sensitive inhibition in the mouse hippocampus
    Andrea L. Hartzell, Kelly Marie Martyniuk, G. Stefano Brigidi, Daniel A Heinz, Nathalie A. Djaja, Anja Payne, Brenda L. Bloodgood · 2018 · eLife
64. Circulating senescent myeloid cells infiltrate the brain and cause neurodegeneration in histiocytic disorders
    Wilk, C. Matthias, Cathomas, Flurin, Török, Orsolya, Le Berichel, Jessica, Park, Matthew D., Bigenwald, Camille, Heaton, George R., Hamon, Pauline, Troncoso, Leanna, Scull, Brooks P. et al. · 2023 · Immunity
65. Cell‐ and region‐specific expression of depression‐related protein p11 (S100a10) in the brain
    Ana Milosevic, Thomas Liebmann, Margarete Grace Knudsen, Nicoletta Schintu, Per Svenningsson, Paul Greengard · 2016 · The Journal of Comparative Neurology
66. 3D Visualization of Individual Regenerating Retinal Ganglion Cell Axons Reveals Surprisingly Complex Growth Paths
    Eric R. Bray, Markus Noga, Kinjal Thakor, Yunfang Wang, Vance Lemmon, Kevin Kyungsuk Park, Pantelis Tsoulfas · 2017 · eNeuro
67. Regulation of GABAA Receptor Subunit Expression in Substance Use Disorders
    Jeffrey Barker, Rochelle M. Hines · 2020 · International Journal of Molecular Sciences
68. Volumetric Ultrasound Localization Microscopy of the Whole Rat Brain Microvasculature
    Baptiste Heiles, Arthur Chavignon, Antoine Bergel, Vincent Hingot, Hicham Serroune, David Maresca, Sophie Pezet, Mathieu Pernot, Mickaël Tanter, Olivier Couture · 2022 · IEEE Open Journal of Ultrasonics Ferroelectrics and Frequency Control
69. Respiratory syncytial virus tropism for olfactory sensory neurons in mice
    Bertrand Bryche, Maxence Frétaud, Audrey Saint-Albin Deliot, Marie Galloux, Laura Sedano, Christelle Langevin, Delphyne Descamps, Marie‐Anne Rameix‐Welti, Jean‐François Eléouët, Ronan Le Goffic et al. · 2019 · Journal of Neurochemistry
70. Whole-brain block-face serial microscopy tomography at subcellular resolution using FAST
    Kaoru Seiriki, Atsushi Kasai, Takanobu Nakazawa, Misaki Niu, Yuichiro Naka, Masato Tanuma, Hisato Igarashi, Kosei Yamaura, Atsuko Hayata‐Takano, Yukio Ago et al. · 2019 · Nature Protocols
71. Scalable Labeling for Cytoarchitectonic Characterization of Large Optically Cleared Human Neocortex Samples
    Sven Hildebrand, Anna Schueth, Andreas Herrler, Ralf A. W. Galuske, Alard F. Roebroeck · 2019 · Scientific Reports
72. Basic quantitative morphological methods applied to the central nervous system
    Lutz Slomianka · 2020 · The Journal of Comparative Neurology
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    Verónica Estela Pastor, Jorge Horacio Medina · 2021 · European Journal of Neuroscience
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    Cantin Ortiz, Marie Carlén, Konstantinos Meletis · 2021 · Annual Review of Neuroscience
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    Daniel Ryskamp Rijsketic, Austen B. Casey, Daniel A. N. Barbosa, Xue Zhang, Tuuli M Hietamies, Grecia Ramirez-Ovalle, Matthew B. Pomrenze, Casey H. Halpern, Leanne Maree Williams, Robert C. Malenka et al. · 2023 · Neuropsychopharmacology
76. Chemical Probes for Visualizing Intact Animal and Human Brain Tissue
    H. M. Lai, Wai‐Lung Ng, Steve Gentleman, Wutian Wu · 2017 · Cell chemical biology
77. Immediate-Early Genes Modulation by Antipsychotics: Translational Implications for a Putative Gateway to Drug-Induced Long-Term Brain Changes
    de Bartolomeis, Andrea, Buonaguro, Elisabetta F., Latte, Gianmarco, Rossi, Rodolfo, Marmo, Federica, Iasevoli, Felice, Tomasetti, Carmine · 2017 · Frontiers in Behavioral Neuroscience
78. Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors
    Jennifer B. Treweek, Viviana Gradinaru · 2016 · Current Opinion in Biotechnology
79. Cysteine depletion triggers adipose tissue thermogenesis and weight loss
    Lee, Aileen H., Orliaguet, Lucie, Youm, Yun-Hee, Maeda, Rae, Dlugos, Tamara, Lei, Yuanjiu, Coman, Daniel, Shchukina, Irina, Andhey, Prabhakar Sairam, Smith, Steven R. et al. · 2025 · Nature Metabolism
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    Diptendu Mukherjee, Bogna Marta Ignatowska-Jankowska, Eyal Itskovits, Ben Jerry Gonzales, Hagit Turm, Liz Izakson, Doron Haritan, Noa Bleistein, Chen Cohen, Ido Amit et al. · 2018 · eLife
81. Opposing roles for striatonigral and striatopallidal neurons in dorsolateral striatum in consolidating new instrumental actions
    Alexander C.W. Smith, Sietse Jonkman, Alexandra G. DiFeliceantonio, Richard M. O’Connor, Soham Ghoshal, Michael F. Romano, Barry J. Everitt, Paul J. Kenny · 2021 · Nature Communications
82. Cellular Anatomy of the Mouse Primary Motor Cortex
    Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine S., Wang, Quanxin, Chen, Xiaoyin, Foster, Nicholas N., Narasimhan, Arun, Li, Anan, Hirokawa, Karla E., Huo, Bingxing et al. · 2020
83. One cranium, two brains not yet introduced: Distinct but complementary views of the social brain
    George S. Prounis, Alexander G. Ophir · 2019 · Neuroscience & Biobehavioral Reviews
84. Dissecting Neuronal Activation on a Brain-Wide Scale With Immediate Early Genes
    Alessandra Franceschini, Irene Costantini, Francesco Saverio Pavone, Ludovico Silvestri · 2020 · Frontiers in Neuroscience
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    Cyrine Ben Dhaou, Kamel Mandi, Mickaël Frye, Angela Acheampong, Ayoub Radi, Benjamin De Becker, Mathieu Antoine, Nicolas Baeyens, Valérie Wittamer, Marc Parmentier · 2021 · Angiogenesis
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    Valeria Bonapersona, Heike Schuler, Ruth Damsteegt, Youri Adolfs, R. Jeroen Pasterkamp, Martijn P. van den Heuvel, Marian Joëls, Ratna Angela Sarabdjitsingh · 2022 · Proceedings of the National Academy of Sciences
87. Self-organized patterning of crocodile head scales by compressive folding
    Gabriel N. Santos-Durán, Rory L. Cooper, Ebrahim Jahanbakhsh, Grigorii Timin, Michel C. Milinkovitch · 2024 · Nature
88. Brain-wide maps of Fos expression during fear learning and recall
    Jin-Hyung Cho, Sam Rendall, Jesse M. Gray · 2017 · Learning & Memory
89. Neuronal PAS domain protein 4 (Npas4) controls neuronal homeostasis in pentylenetetrazole‐induced epilepsy through the induction of Homer1a
    Wei Shan, Taku Nagai, Motoki Tanaka, Norimichi Itoh, Yoko Furukawa‐Hibi, Toshitaka Nabeshima, Masahiro Sokabe, Kiyofumi Yamada · 2017 · Journal of Neurochemistry
90. Mapping of the three-dimensional lymphatic microvasculature in bladder tumours using light-sheet microscopy
    Nobuyuki Tanaka, Dagmara Kaczyńska, Shigeaki Kanatani, Cecilia Sahlgren, Przemysław Mitura, Andrzej Stepulak, Ayako Miyakawa, Peter N. Wiklund, Per Uhlén · 2018 · British Journal of Cancer
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    Qi Wang, Kai‐Li Liu, Lu Yang, Huanhuan Wang, Jing Hui Yang · 2019 · Cell Research
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    Oswald Steward, Kelly Matsudaira Yee, Mariajose Metcalfe, Rafer Willenberg, Juan Luo, Ricardo Azevedo, Jacob H. Martin-Thompson, Sunil Gandhi · 2020 · Cerebral Cortex
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    Kyohei Tokizane, Cynthia S. Brace, Shin‐ichiro Imai · 2024 · Cell Metabolism
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    Hongjie Li, S. Andrew Shuster, Jun Li, Liqun Luo · 2018 · Neural Development
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    Adam L. Tyson, Troy W. Margrie · 2021 · Progress in Biophysics and Molecular Biology
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    Christopher A Zimmerman, Scott S. Bolkan, Alejandro Pan-Vazquez, Bichan Wu, Emma Keppler, Jordan B Meares-Garcia, Eartha Mae Guthman, Robert N. Fetcho, Brenna McMannon, Junuk Lee et al. · 2025 · Nature
97. Glomerular endothelial cell maturation depends on ADAM10, a key regulator of Notch signaling
    Gregory Farber, Romulo Hurtado, Sarah Ann Loh, Sébastien Monette, James Mtui, Raphael Kopan, Susan E. Quaggin, Catherine Meyer‐Schwesinger, Doris Herzlinger, Rizaldy P. Scott et al. · 2018 · Angiogenesis
98. Regional vulnerability and spreading of hyperphosphorylated tau in seeded mouse brain
    Detrez, Jan R., Maurin, Hervé, Van Kolen, Kristof, Willems, Roland, Colombelli, Julien, Lechat, Benoit, Roucourt, Bart, Van Leuven, Fred, Baatout, Sarah, Larsen, Peter et al. · 2019 · Neurobiology of Disease
99. Embryogenesis of the peristaltic reflex
    Nicolas R. Chevalier, Nicolas Dacher, Cécile Jacques, Lucas Langlois, Chloé Guedj, Orestis Faklaris · 2019 · The Journal of Physiology
100. Light sheet fluorescence microscopy of optically cleared brains for studying the glymphatic system
     Nicholas Burdon Bèchet, Tekla Maria Kylkilahti, Bengt Mattsson, Martina Petrášová, Nagesh C. Shanbhag, Iben Lundgaard · 2020 · Journal of Cerebral Blood Flow & Metabolism