The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
Open accessAbstract
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological, cellular, and molecular processes. It has also greatly advanced our understanding of intraspecific genome variation. We present a detailed map of variation in 1,135 high-quality re-sequenced natural inbred lines representing the native Eurasian and North African range and recently colonized North America. We identify relict populations that continue to inhabit ancestral habitats, primarily in the Iberian Peninsula. They have mixed with a lineage that has spread to northern latitudes from an unknown glacial refugium and is now found in a much broader spectrum of habitats. Insights into the history of the species and the fine-scale distribution of genetic diversity provide the basis for full exploitation of A. thaliana natural variation through integration of genomes and epigenomes with molecular and non-molecular phenotypes.
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Cites
A global reference for human genetic variation
The 1000 Genomes Project Consortium, authors, C., Auton, A., Abecasis, G. R., Steering committee, Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., et al. (2015) · Nature · doi:10.1038/nature15393 · Cited by 18,247
Self-citationFast model-based estimation of ancestry in unrelated individuals
Alexander, D. H., Novembre, J., & Lange, K. (2009) · Genome Research · doi:10.1101/gr.094052.109 · Cited by 9,898
Genome-wide efficient mixed-model analysis for association studies
Zhou, X., & Stephens, M. (2012) · Nature Genetics · doi:10.1038/ng.2310 · Cited by 3,627 · cited 1×
“We examined correlations of genetic variants with six climate variables that capture variability in current temperature and precipitation using amixedmodel that controls for genome-wide relatedness across samples (Zhou and Stephens, 2012).”
MethodSelf-citationGenome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
Atwell, S., Huang, Y. S., Vilhjálmsson, B. J., Willems, G., Horton, M., Li, Y., Meng, D., Platt, A., Tarone, A. M., Hu, T. T., et al. (2010) · Nature · doi:10.1038/nature08800 · Cited by 1,780
Self-citationBrowning, B. L., & Browning, S. R. (2009) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2009.01.005 · Cited by 1,640
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Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergström, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., et al. (2018) · Nature · doi:10.1038/s41586-018-0030-5 · Cited by 1,117
Alonge, M., Lebeigle, L., Kirsche, M., Jenike, K., Ou, S., Aganezov, S., Wang, X., Lippman, Z. B., Schatz, M. C., & Soyk, S. (2022) · Genome Biology · doi:10.1186/s13059-022-02823-7 · Cited by 992
Self-citationThe EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity
Pruitt, R. N., Locci, F., Wanke, F., Zhang, L., Saile, S. C., Joe, A., Karelina, D., Hua, C., Fröhlich, K., Wan, W.-L., et al. (2021) · Nature · doi:10.1038/s41586-021-03829-0 · Cited by 455
Self-citationHunt, S. E., McLaren, W., Gil, L., Thormann, A., Schuilenburg, H., Sheppard, D., Parton, A., Armean, I. M., Trevanion, S. J., Flicek, P., et al. (2018) · Database · doi:10.1093/database/bay119 · Cited by 452
Mutation bias reflects natural selection in Arabidopsis thaliana
Monroe, J. G., Srikant, T., Carbonell-Bejerano, P., Becker, C., Lensink, M., Exposito-Alonso, M., Klein, M., Hildebrandt, J., Neumann, M., Kliebenstein, D., et al. (2022) · Nature · doi:10.1038/s41586-021-04269-6 · Cited by 396
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Metadata
- Authors
- Alonso-Blanco, C., Andrade, J., Becker, C., Bemm, F., Bergelson, J., Borgwardt, K. M., Cao, J., Chae, E., Dezwaan, T. M., Ding, W., Ecker, J. R., Exposito-Alonso, M., Farlow, A., Fitz, J., Gan, X., Grimm, D. G., Hancock, A. M., Henz, S. R., Holm, S., Horton, M., Jarsulic, M., Kerstetter, R. A., Korte, A., Korte, P., Lanz, C., Lee, C.-R., Meng, D., Michael, T. P., Mott, R., Muliyati, N. W., Nägele, T., Nagler, M., Nizhynska, V., Nordborg, M., Novikova, P. Y., Picó, F. X., Platzer, A., Rabanal, F. A., Rodriguez, A., Rowan, B. A., Salomé, P. A., Schmid, K. J., Schmitz, R. J., Seren, Ü., Sperone, F. G., Sudkamp, M., Svardal, H., Tanzer, M. M., Todd, D., Volchenboum, S. L., Wang, C., Wang, G., Wang, X., Weckwerth, W., Weigel, D., & Zhou, X.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2016-07
- Volume
- 166
- Issue
- 2
- Pages
- 481-491
- ISSN
- 0092-8674 (ISSN-L)
- OpenAlex
- W2419574648
- Cited by
- 1,329
- References
- 5
- FWCI
- 95.16
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Alonso-Blanco, C., Andrade, J., Becker, C., Bemm, F., Bergelson, J., Borgwardt, K. M., Cao, J., Chae, E., Dezwaan, T. M., Ding, W., Ecker, J. R., Exposito-Alonso, M., Farlow, A., Fitz, J., Gan, X., Grimm, D. G., Hancock, A. M., Henz, S. R., Holm, S., . . . Zhou, X. (2016). 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell. https://doi.org/10.1016/j.cell.2016.05.063
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