Molecular diversity of midbrain development in mouse, human, and stem cells
La Manno, Gioele, Gyllborg, Daniel, Codeluppi, Simone, Nishimura, Kaneyasu, Salto, Carmen, Zeisel, Amit, Borm, Lars E., Stott, Simon R.W. +7 more·2016·Cell
Cited by (842)
Items 501–600 of 842
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- Exploring the optimization of autoencoder design for imputing single-cell RNA sequencing dataNan Miles Xi, Jingyi Jessica Li · 2023 · Computational and Structural Biotechnology Journal
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- Spatial Omics: Navigating Neuroscience Research into the New EraPengfei Guo, Yanxiang Deng · 2024 · Advances in neurobiology
- Identifying Common Genes, Cell Types and Brain Regions Between Diseases of the Nervous SystemMengling Qi, Shichao Fan, Zhi Wang, Xiaoxing Yang, Zicong Xie, Ken Chen, Lei Zhang, Tao Lin, Wei Liu, Xinlei Lin et al. · 2019 · Frontiers in Genetics
- Dementia with Lewy bodies post-mortem brains reveal differentially methylated CpG sites with biomarker potentialXiaojian Shao, Sangeetha Vishweswaraiah, Miroslava Čuperlović‐Culf, Ali Yılmaz, Celia M.T. Greenwood, Anuradha Surendra, Bernadette McGuinness, Peter Passmore, Patrick G. Kehoe, Michael E. Maddens et al. · 2022 · Communications Biology
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- Iterative Systems Biology for Medicine – Time for advancing from network signatures to mechanistic equationsDavid Gómez-Cabrero, Jesper N. Tegner · 2017 · Current Opinion in Systems Biology
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- [Minimally invasive surgery for lung cancer using thoracoscope as a 'microscopic surgery'; for the safety endoscopic surgery].Keishi Kondo, Hiroshi Adachi · 2006 · PubMed
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