Cohesin Loss Eliminates All Loop Domains

Rao, Suhas S.P., Huang, Su-Chen, Glenn St Hilaire, Brian, Engreitz, Jesse M., Perez, Elizabeth M., Kieffer-Kwon, Kyong-Rim, Sanborn, Adrian L., Johnstone, Sarah E. +14 more·2017·Cell

Cited by (1,002)

Items 501–600 of 1,002

  1. In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila
    Rodrigo G. Arzate-Mejía, Angel Josué Cerecedo-Castillo, G. Guerrero, M. Furlan-Magaril, F. Recillas-Targa · 2019 · Nature Communications
  2. Multi-scale architecture of archaeal chromosomes
    Naomichi Takemata, S. Bell · 2020 · Molecules and Cells
  3. Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells
    Sarah G. Swygert, Dejun Lin, Stephanie Portillo‐Ledesma, Po-Yen Lin, Dakota R. Hunt, Cheng-Fu Kao, Tamar Schlick A, William Stafford Noble, Toshio Tsukiyama · 2021 · eLife
  4. STAG2 regulates interferon signaling in melanoma via enhancer loop reprogramming
    Zhao-Wei Chu, Lei Gu, Ye-Guang Hu, Xiaoyang Zhang, Man Li, Jia-Jia Chen, Da Teng, Man Huang, Che-Hung Shen, Li Cai et al. · 2022 · Nature Communications
  5. Dynamic 3D Chromatin Reorganization during Establishment and Maintenance of Pluripotency
    Bobbie Pelham‐Webb, Dylan Murphy, Effie Apostolou · 2020 · Stem Cell Reports
  6. Interferons reshape the 3D conformation and accessibility of macrophage chromatin
    Ekaterini Platanitis, Stephan Gruener, Aarathy Ravi Sundar Jose Geetha, Laura Boccuni, Alexander Vogt, Maria Novatchkova, Andreas Sommer, Iros Barozzi, Mathias M. Müller, Thomas Decker · 2022 · iScience
  7. Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation
    Aleksandra A. Galitsyna, Sergey V. Ulianov, Mariia Bazarevich, Nikolai S. Bykov, Marina Veil, Meijiang Gao, Kristina Perevoschikova, Mikhail Sergeevich Gelfand, Sergey V. Razin, Leonid A. Mirny et al. · 2026 · Nature Communications
  8. The role of 3D genome organization in disease: From compartments to single nucleotides
    Abhijit Chakraborty, Ferhat Ay · 2018 · Seminars in Cell and Developmental Biology
  9. Parvovirus minute virus of mice interacts with sites of cellular DNA damage to establish and amplify its lytic infection
    Kinjal Majumder, Juexin Wang, Maria Boftsi, Matthew S. Fuller, Jordan E. Rede, Trupti Joshi, David J. Pintel · 2018 · eLife
  10. Scc2 counteracts a Wapl-independent mechanism that releases cohesin from chromosomes during G1
    Madhusudhan Srinivasan, Naomi J Petela, Johanna C. Scheinost, James Collier, Menelaos Voulgaris, Maurici Brunet Roig, Frédéric Beckouët, Bin Hu, Kim Nasmyth · 2019 · eLife
  11. The multiscale effects of polycomb mechanisms on 3D chromatin folding
    Thierry Cheutin, Giacomo Cavalli · 2019 · Critical Reviews in Biochemistry and Molecular Biology
  12. Evidence of pioneer factor activity of an oncogenic fusion transcription factor
    Benjamin D. Sunkel, Meng Wang, Stephanie LaHaye, Benjamin Kelly, James Fitch, Frederic G. Barr, Peter White, Benjamin Z. Stanton · 2021 · iScience
  13. The Pol II preinitiation complex (PIC) influences Mediator binding but not promoter–enhancer looping
    Fei Sun, Terrence Sun, Michael Kronenberg, Xianglong Tan, Chengyang Huang, Michael Carey · 2021 · Genes & Development
  14. Mechanisms of sex determination and X-chromosome dosage compensation
    Barbara J Meyer · 2022 · Genetics
  15. MYC reshapes CTCF-mediated chromatin architecture in prostate cancer
    Zhao Wei, Song Wang, Yaning Xu, Wenzheng Wang, Fraser Soares, Musaddeque Ahmed, Ping Su, Tingting Wang, Elias Orouji, Xin Xu et al. · 2023 · Nature Communications
  16. Theory of chromatin organization maintained by active loop extrusion
    Brian Chan, Michael Rubinstein · 2023 · Proceedings of the National Academy of Sciences
  17. Whole-genome doubling in tissues and tumors
    Marc A. Vittoria, Ryan J. Quinton, Neil J. Ganem · 2023 · Trends in Genetics
  18. Lineage-specific 3D genome organization is assembled at multiple scales by IKAROS
    Ye-Guang Hu, Daniela Salgado Figueroa, Zhihong Zhang, Margaret L. Veselits, Sourya Bhattacharyya, Mariko Kashiwagi, Marcus R. Clark, B. A. Morgan, F. Ay, Katia Georgopoulos · 2023 · Cell
  19. Three-dimensional chromatin reorganization regulates B cell development during ageing
    Fei Ma, Yaqiang Cao, Hansen Du, Fatima-Zohra Braikia, Le Zong, Noah Ollikainen, Marc Bayer, Xiang Qiu, Bongsoo Park, Roshni Roy et al. · 2024 · Nature Cell Biology
  20. A tethered-inchworm model of SMC DNA translocation
    Michael H. Nichols, Victor G. Corces · 2018 · Nature Structural & Molecular Biology
  21. Gene-Specific H1 Eviction through a Transcriptional Activator→p300→NAP1→H1 Pathway
    Miho Shimada, Wei‐Yi Chen, Tomoyoshi Nakadai, Takashi Onikubo, Mohamed Guermah, Daniela Rhodes, Robert G. Roeder · 2019 · Molecular Cell
  22. PDS5A and PDS5B in Cohesin Function and Human Disease
    Nenggang Zhang, Luiza E. Coutinho, Debananda Pati · 2021 · International Journal of Molecular Sciences
  23. Cohesin Mutations in Cancer: Emerging Therapeutic Targets
    Jisha Antony, Chue Vin Chin, Julia A. Horsfield · 2021 · International Journal of Molecular Sciences
  24. Polymer physics reveals a combinatorial code linking 3D chromatin architecture to 1D chromatin states
    Andrea Esposito, Simona Bianco, Andrea M. Chiariello, Alex Abraham, Luca Fiorillo, Mattia Conte, Raffaele Campanile, Mario Nicodemi · 2022 · Cell Reports
  25. Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters
    Irene Robles-Rebollo, Sergi Cuartero, Adrià Cañellas-Socias, Sarah Wells, Mohammad Mahdi Karimi, Elisabetta Mereu, Alexandra G. Chivu, Holger Heyn, Chad Whilding, Dirk Dormann et al. · 2022 · Nature Communications
  26. Ecdysone-Induced 3D Chromatin Reorganization Involves Active Enhancers Bound by Pipsqueak and Polycomb
    Irene Gutiérrez-Pérez, M. Jordan Rowley, Xiaowen Lyu, Viviana Valadéz-Graham, Diana M. Vallejo, Esther Ballesta‐Illán, José P. López‐Atalaya, Isaac Kremsky, Esther Caparrós, Victor G. Corces et al. · 2019 · Cell Reports
  27. Smc3 dosage regulates B cell transit through germinal centers and restricts their malignant transformation
    Martín A. Rivas, Cem Meydan, Christopher R. Chin, Matt F. Challman, Daleum Kim, Bhavneet Bhinder, Andreas Kloetgen, Aaron D. Viny, Matt R. Teater, Dylan R. McNally et al. · 2021 · Nature Immunology
  28. The Stochastic Genome and Its Role in Gene Expression
    Christopher H. Bohrer, Daniel R. Larson · 2021 · Cold Spring Harbor Perspectives in Biology
  29. Non-coding RNAs and chromatin domains
    Tatsuro Yamamoto, Noriko Saitoh · 2019 · Current Opinion in Cell Biology
  30. RNA polymerase II transcription compartments — from factories to condensates
    Karsten Rippe, Argyris Papantonis · 2025 · Nature Reviews Genetics
  31. FACT mediates cohesin function on chromatin
    Jonay García-Luis, Luciana Lazar‐Stefanita, Pilar Gutiérrez-Escribano, Agnès Thierry, Axel Cournac, Alicia García, Sara González, Mar Sánchez, Adam Jarmuz, Alex Montoya et al. · 2019 · Nature Structural & Molecular Biology
  32. Targeted Protein Depletion Using the Auxin‐Inducible Degron 2 (AID2) System
    Yuichiro Saito, Masato T. Kanemaki · 2021 · Current Protocols
  33. Heterochromatin drives organization of conventional and inverted nuclei
    Martin J. Falk, Yana N. Feodorova, Natasha Naumova, Maxim Imakaev, Bryan R. Lajoie, Heinrich Leonhardt, Boris I. Joffe, Job Dekker, Geoffrey Fudenberg, Irina V. Solovei et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  34. Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures
    Comoglio, Federico, Park, Hyun Jung, Schoenfelder, Stefan, Barozzi, Iros, Bode, Daniel, Fraser, Peter, Green, Anthony R. · 2018 · Genome Research
  35. SMC motor proteins extrude DNA asymmetrically and can switch directions
    Barth, Roman, Davidson, Iain F., van der Torre, Jaco, Taschner, Michael, Gruber, Stephan, Peters, Jan-Michael, Dekker, Cees · 2025 · Cell
  36. Hi-TrAC reveals division of labor of transcription factors in organizing chromatin loops
    Shuai Liu, Ya-Qiang Cao, Kai-Rong Cui, Qing-Song Tang, Ke-Ji Zhao · 2022 · Nature Communications
  37. Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity
    Zhi Liu, Dong-Sung Lee, Yuqiong Liang, Ye Zheng, Jesse R. Dixon · 2023 · Nature Communications
  38. Transcription processes compete with loop extrusion to homogenize promoter and enhancer dynamics
    Platania, Angeliki, Erb, Cathie, Barbieri, Mariano, Molcrette, Bastien, Grandgirard, Erwan, de Kort, Marit A. C., Pomp, Wim, Meaburn, Karen, Taylor, Tiegh, Shchuka, Virlana M. et al. · 2024 · Science Advances
  39. Single-cell Micro-C profiles 3D genome structures at high resolution and characterizes multi-enhancer hubs
    Honggui Wu, Jiankun Zhang, Longzhi Tan, Xiaoliang Sunney Xie · 2025 · Nature Genetics
  40. The 4D Nucleome: Genome Compartmentalization in an Evolutionary Context
    Thomas John Cremer, Marion Cremer, Christoph G. Cremer · 2018 · Biochemistry (Moscow)
  41. Wapl releases Scc1-cohesin and regulates chromosome structure and segregation in mouse oocytes
    Mariana C.C. Silva, Sean T. Powell, Sabrina Ladstätter, Johanna Gassler, Roman R. Stocsits, Antonio Tedeschi, Jan‐Michael Peters, Kiku-e K. Tachibana · 2020 · The Journal of Cell Biology
  42. CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
    Silvia Galan, Nick Machnik, Kai Kruse, Noèlia Díaz, Marc A. Martı́-Renom, Juan M. Vaquerizas · 2020 · Nature Genetics
  43. Loop competition and extrusion model predicts CTCF interaction specificity
    Xi Wang, M Beer · 2021 · Nature Communications
  44. STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells
    Laia Richart, Eleonora Lapi, Véra Pancaldi, Mirabai Cuenca-Ardura, Enrique Carrillo de Santa Pau, Miguel Madrid-Mencía, Hélène Neyret‐Kahn, François Radvanyi, Juan Antonio Rodríguez, Yasmina Cuartero et al. · 2021 · Nucleic Acids Research
  45. Polycomb-lamina antagonism partitions heterochromatin at the nuclear periphery
    Allison P. Siegenfeld, Shelby A Roseman, Heejin Roh, Nicholas Z. Lue, Corin Wagen, Eric Zhou, Sarah E. Johnstone, Martin J. Aryee, Brian B. Liau · 2022 · Nature Communications
  46. Sequential Enhancer Sequestration Dysregulates Recombination Center Formation at the IgH Locus
    Xiang Qiu, Gita Kumari, Tatiana I. Gerasimova, Hansen Du, Lawal A. Labaran, Amit Singh, Supriyo De, William H. Wood, Kevin G. Becker, Weiqiang Zhou et al. · 2018 · Molecular Cell
  47. Cell division requires RNA eviction from condensing chromosomes
    Judith A. Sharp, Carlos Perea-Resa, Wei Wang, Michael D. Blower · 2020 · The Journal of Cell Biology
  48. Sex-specific multi-level 3D genome dynamics in the mouse brain
    Devin Rocks, Mamta Shukla, Laila Ouldibbat, Silvia C. Finnemann, Achyuth Kalluchi, M. Jordan Rowley, Marija Kundaković · 2022 · Nature Communications
  49. Upon microbial challenge, human neutrophils undergo rapid changes in nuclear architecture and chromatin folding to orchestrate an immediate inflammatory gene program
    M. Denholtz, Yina Zhu, Zhaoren He, Hanbin Lu, Takeshi Isoda, S. Döhrmann, V. Nizet, C. Murre · 2020 · Genes & Development
  50. CTCF coordinates cell fate specification via orchestrating regulatory hubs with pioneer transcription factors.
    Yuting Liu, Xin Wan, Hu Li, Ying-Xi Chen, Xiao-Di Hu, Hebing Chen, Da-Hai Zhu, Cheng Li, Yong Zhang · 2023 · Cell Reports
  51. Enhancer–promoter interactions can form independently of genomic distance and be functional across TAD boundaries
    Deevitha Balasubramanian, Pedro Borges Pinto, Alexia Grasso, Séverine Vincent, Hélène Tarayre, Damien Lajoignie, Yad Ghavi-Helm · 2023 · Nucleic Acids Research
  52. Chromatin conformation, gene transcription, and nucleosome remodeling as an emergent system
    Luay Matthew Almassalha, Marcelo A. Carignano, Emily M. Pujadas-Liwag, Wing Shun Li, Ruyi Gong, Nicolas Acosta, Cody L. Dunton, Paola Carrillo Gonzalez, Lucas M. Carter, Rivaan Kakkaramadam et al. · 2025 · Science Advances
  53. DNA sequence-dependent chromatin architecture and nuclear hubs formation
    Kamel Jabbari, Maharshi Chakraborty, Thomas Wiehe · 2019 · Scientific Reports
  54. Computational approaches from polymer physics to investigate chromatin folding
    Simona Bianco, Andrea M. Chiariello, Mattia Conte, Andrea Esposito, Luca Fiorillo, Francesco Musella, Mario Nicodemi · 2020 · Current Opinion in Cell Biology
  55. Predicting Genome Architecture: Challenges and Solutions
    P. Belokopytova, V. Fishman · 2021 · Frontiers in Genetics
  56. Dynamics of replication origin over-activation
    Haiqing Fu, Christophe E. Redon, Bhushan L. Thakur, Koichi Utani, Robin Sebastian, Sang‐Min Jang, Jacob Gross, Sara Mosavarpour, Anna B. Marks, Sophie Z. Zhuang et al. · 2021 · Nature Communications
  57. Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries
    Zubairul Islam, Bharath Saravanan, Kaivalya Walavalkar, Umer Farooq, Anurag Kumar Singh, Radhakrishnan Sabarinathan, Jitendra Thakur, Awadhesh Pandit, Steven Henikoff, Dimple Notani · 2023 · Genome Research
  58. Genome modeling: From chromatin fibers to genes
    Stephanie Portillo‐Ledesma, Zilong Li, Tamar Schlick A · 2022 · Current Opinion in Structural Biology
  59. The adapted Activity-By-Contact model for enhancer–gene assignment and its application to single-cell data
    Dennis Hecker, Fatemeh Behjati Ardakani, Alexander Karollus, Julien Gagneur, Marcel H. Schulz · 2023 · Bioinformatics
  60. Understanding and Engineering Chromatin as a Dynamical System across Length and Timescales
    Christopher P. Johnstone, Nathan Wang, Stuart A. Sevier, Kate E. Galloway · 2020 · Cell Systems
  61. Single‐cell imaging of genome organization and dynamics
    Liangqi Xie, Zhe J. Liu · 2021 · Molecular Systems Biology
  62. A Mediator-cohesin axis controls heterochromatin domain formation
    J. Haarhuis, Robin H. van der Weide, V. Blomen, K. Flach, Hans Teunissen, Laureen Willems, T. Brummelkamp, B. Rowland, Elzo de Wit · 2022 · Nature Communications
  63. Chromatin organization by an interplay of loop extrusion and compartmental segregation
    Johannes Nuebler, Geoffrey Fudenberg, Maxim Imakaev, Nezar A. Abdennur, Leonid A. Mirny · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  64. Super-enhancers: A new frontier for glioma treatment
    Meng Cheng, Zheng Wei Zhang, Xing Ji, Yadi Xu, Erbao Bian, Bing Zhao · 2020 · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
  65. DNA double-strand break end synapsis by DNA loop extrusion
    Yang, Jin H., Brandão, Hugo B., Hansen, Anders S. · 2023 · Nature Communications
  66. Transcription-coupled structural dynamics of topologically associating domains regulate replication origin efficiency
    Yongzheng Li, Boxin Xue, Mengling Zhang, Liwei Zhang, Yingping Hou, Yizhi Qin, Haizhen Long, Qian Peter Su, Yao Wang, Xiaodong Guan et al. · 2021 · Genome biology
  67. SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates
    Tushar Warrier, Chadi A. El Farran, Yingying Zeng, Benedict Shao Quan Ho, Don Loi Xu, Qiuye Bao, Zi Hao Zheng, Huck‐Hui Ng, Kelly Tan, Huck‐Hui Ng et al. · 2022 · Nucleic Acids Research
  68. HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps
    Peter Kerpedjiev, Nezar A. Abdennur, Fritz Lekschas, Chuck McCallum, Kasper Dinkla, Hendrik Strobelt, Jacob M. Luber, Scott Ouellette, Alaleh Azhir, Nikhil Kumar et al. · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  69. Enhancer-promoter interactions and transcription are maintained upon acute loss of CTCF, cohesin, WAPL, and YY1
    Hsieh, Tsung-Han S., Cattoglio, Claudia, Slobodyanyuk, Elena, Hansen, Anders S., Darzacq, Xavier, Tjian, Robert · 2021
  70. Rec8 Cohesin: A Structural Platform for Shaping the Meiotic Chromosomes
    Takeshi Sakuno, Yasushi Hiraoka · 2022 · Genes
  71. A maximum-entropy model to predict 3D structural ensembles of chromatin from pairwise distances with applications to interphase chromosomes and structural variants
    Guang Shi, Dave Thirumalai · 2023 · Nature Communications
  72. BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state
    Muran Xiao, Shinji Kondo, Masaki Nomura, Shinichiro Kato, Koutarou Nishimura, Weijia Zang, Yifan Zhang, Tomohiro Akashi, Aaron D. Viny, Tsukasa Shigehiro et al. · 2023 · Nature Communications
  73. SiCLAT: simultaneous imaging of chromatin loops and active transcription in living cells
    Xin Wan, Jie Kong, Xiaodi Hu, Lulu Liu, Yuanping Yang, Hu Li, Gaoao Liu, Xingchen Niu, Fengling Chen, Dan Zhang et al. · 2025 · Genome biology
  74. Native nucleosomes intrinsically encode genome organization principles
    Sangwoo Park, Raquel Merino‐Urteaga, Violetta Karwacki-Neisius, Gustavo Carrizo, Advait Athreya, Alberto Marín-González, Nils A. Benning, Jonghan Park, Michelle M. Mitchener, Natarajan V. Bhanu et al. · 2025 · Nature
  75. Enhancer reprogramming in tumor progression: a new route towards cancer cell plasticity
    Luca Fagnocchi, Vittoria Poli, Alessio Zippo · 2018 · Cellular and Molecular Life Sciences
  76. Theoretical principles of transcription factor traffic on folded chromatin
    Ruggero Cortini, Guillaume J. P. Filion · 2018 · Nature Communications
  77. Computational methods for analyzing and modeling genome structure and organization
    Dejun Lin, Giancarlo Bonora, Galip Gürkan Yardımcı, William Stafford Noble · 2018 · WIREs Systems Biology and Medicine
  78. A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops
    Jayoung Ryu, Hyun-Woong Kim, Dongchan Yang, Andrew Lee, Inkyung Jung · 2019 · BMC Bioinformatics
  79. Ligand-induced genetic degradation as a tool for target validation
    Aisha Yesbolatova, Yusuke Tominari, Masato T. Kanemaki · 2018 · Drug Discovery Today Technologies
  80. Identifying proteins bound to native mitotic ESC chromosomes reveals chromatin repressors are important for compaction
    Dounia Djeghloul, Bhavik Patel, Holger B. Kramer, Andrew Dimond, Chad Whilding, K. Brown, A. Kohler, Amélie Feytout, N. Veland, J. Elliott et al. · 2020 · Nature Communications
  81. The S-phase-induced lncRNA SUNO1 promotes cell proliferation by controlling YAP1/Hippo signaling pathway
    Qinyu Hao, Xinying Zong, Qinyu Sun, Yo-Chuen Lin, You Jin Song, Seyedsasan Hashemikhabir, Rosaline Y.C. Hsu, Mohammad Zahid Kamran, Ritu Chaudhary, Vidisha Tripathi et al. · 2020 · eLife
  82. Age-related and disease locus-specific mechanisms contribute to early remodelling of chromatin structure in Huntington’s disease mice
    Rafael Alcalá‐Vida, Jonathan Séguin, Caroline Lotz, Anne Marie Molitor, Ibai Irastorza-Azcárate, Ali Awada, Nezih Karasu, Aurélie Bombardier, Brigitte Cosquer, José Luis Gómez-Skármeta et al. · 2021 · Nature Communications
  83. How DNA loop extrusion mediated by cohesin enables V(D)J recombination
    Jan‐Michael Peters · 2021 · Current Opinion in Cell Biology
  84. Enhancer Talk
    Valentina Snetkova, Jane A. Skok · 2018 · Epigenomics
  85. Chromatin structure in cancer
    Meng Wang, Benjamin D. Sunkel, William C. Ray, Benjamin Z. Stanton · 2022 · BMC Molecular and Cell Biology
  86. Chromatin epigenetics and nuclear lamina keep the nucleus in shape: Examples from natural and accelerated aging
    Pietro Salvatore Carollo, Viviana Barra · 2022 · Biology of the Cell
  87. Canonical and single-cell Hi-C reveal distinct chromatin interaction sub-networks of mammalian transcription factors
    Xiaoyan Ma, Daphne Ezer, Boris Adryan, Tim J. Stevens · 2018 · Genome biology
  88. Rapid depletion of CTCF and cohesin proteins reveals dynamic features of chromosome architecture
    Ning-Qing Liu, Mikhail D. Magnitov, Marijne M G A Schijns, T. van Schaik, Robin H. van der Weide, Hans Teunissen, B. van Steensel, Elzo de Wit · 2021 · bioRxiv
  89. An extrinsic motor directs chromatin loop formation by cohesin
    Thomas M Guérin, Christopher Barrington, Georgii Pobegalov, Maxim I. Molodtsov, Frank Uhlmann · 2024 · The EMBO Journal
  90. Mesoscale Modeling of Chromatin Fibers
    Gavin D. Bascom, Tamar Schlick A · 2017 · Elsevier eBooks
  91. Limits of Chromosome Compaction by Loop-Extruding Motors
    Edward J. Banigan, Leonid A. Mirny · 2019 · Physical Review X
  92. Ligand-induced degrons for studying nuclear functions
    Masato T. Kanemaki · 2022 · Current Opinion in Cell Biology
  93. DNA Repair in Space and Time: Safeguarding the Genome with the Cohesin Complex
    Jamie Phipps, Karine Dubrana · 2022 · Genes
  94. Alcohol induced increases in sperm Histone H3 lysine 4 trimethylation correlate with increased placental CTCF occupancy and altered developmental programming
    Yudhishtar S. Bedi, Haiqing Wang, Kara N. Thomas, Alison Basel, Julien Prunier, Claude Robert, Michael C. Golding · 2022 · Scientific Reports
  95. Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models
    Kiana Mohajeri, Rachita Yadav, Eva D’haene, Philip M. Boone, Serkan Erdin, Dadi Gao, Mariana Moysés‐Oliveira, Riya Bhavsar, Benjamin Currall, Kathryn O’Keefe et al. · 2022 · The American Journal of Human Genetics
  96. Genomic profiling of HIV-1 integration in microglia cells links viral integration to the topologically associated domains
    Mona Rheinberger, Ana Luisa Costa, Martin Kampmann, Dunja Glavaš, Iart Luca Shytaj, Sheetal Sreeram, Carlotta Penzo, Nadine Tibroni, Yoelvis García‐Mesa, Konstantin Leskov et al. · 2023 · Cell Reports
  97. Cohesin maintains replication timing to suppress DNA damage on cancer genes
    Jinchun Wu, Yang Liu, Zhengrong Zhangding, Xuhao Liu, Ai Chen, Tingting Gan, Haoxin Liang, Yuefeng Guo, Mohan Chen, Yiyang Liu et al. · 2023 · Nature Genetics
  98. Activity-driven chromatin organization during interphase: Compaction, segregation, and entanglement suppression
    Brian Chan, M. Rubinstein · 2024 · bioRxiv
  99. Extensive mutual influences of SMC complexes shape 3D genome folding
    Han Zhao, Lirong Shu, Shiyi Qin, Feng Lyu, Fuhai Liu, En Lin, Sijian Xia, Baiyue Wang, Manzhu Wang, Fengnian Shan et al. · 2025 · Nature
  100. 3D genome folding in epigenetic regulation and cellular memory
    Flora Paldi, Giacomo Cavalli · 2025 · Trends in Cell Biology