Cohesin Loss Eliminates All Loop Domains
Rao, Suhas S.P., Huang, Su-Chen, Glenn St Hilaire, Brian, Engreitz, Jesse M., Perez, Elizabeth M., Kieffer-Kwon, Kyong-Rim, Sanborn, Adrian L., Johnstone, Sarah E. +14 more·2017·Cell
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- CTCF and R-loops are boundaries of cohesin-mediated DNA loopingHongshan Zhang, Zhubing Shi, Edward J. Banigan, Yoori Kim, Hongtao Yu, Xiao‐chen Bai, Ilya J. Finkelstein · 2023 · Molecular Cell
- Emerging themes in cohesin cancer biologyTodd A. Waldman · 2020 · Nature reviews. Cancer
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- Epigenetic regulation in cancerMinzhi Gu, Bo Ren, Yuan Fang, Jie Ren, Xiaohong Liu, Xing Wang, Feihan Zhou, Ruiling Xiao, Xiyuan Luo, Lei You et al. · 2024 · MedComm
- Cohesin residency determines chromatin loop patternsLorenzo Costantino, Tsung-Han S. Hsieh, Rebecca C. Lamothe, Xavier Darzacq, Douglas E. Koshland · 2020 · eLife
- The role of chromatin loop extrusion in antibody diversificationYu Zhang, Xuefei Zhang, Hai‐Qiang Dai, Hongli Hu, Frederick W. Alt · 2022 · Nature reviews. Immunology
- Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topologyBarrington, Christopher, Georgopoulou, Dimitra, Pezic, Dubravka, Varsally, Wazeer, Herrero, Javier, Hadjur, Suzana · 2019 · Nature Communications
- Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?Mustafa Mir, Wendy A. Bickmore, Eileen E. M. Furlong, Geeta J. Narlikar · 2019 · Development
- RNA polymerase II is required for spatial chromatin reorganization following exit from mitosisShu Zhang, Nadine Übelmesser, Nataša Josipović, Giada Forte, Johan A. Slotman, Michael Chiang, Henrike Johanna Gothe, Eduardo Gade Gusmao, Christian Becker, Janine Altmüller et al. · 2021 · Science Advances
- Structural variations in cancer and the 3D genomeFrank P. B. Dubois, Nikos Sidiropoulos, Joachim Weischenfeldt, Rameen Beroukhim · 2022 · Nature reviews. Cancer
- The chromosome folding problem and how cells solve itDekker, Job, Mirny, Leonid A. · 2024 · Cell
- Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammalsM. Jordan Rowley, Axel Poulet, Michael H. Nichols, Brianna J. Bixler, Adrian L. Sanborn, Elizabeth A. Brouhard, Karen E. Hermetz, Hannah Linsenbaum, Györgyi Csankovszki, Erez Lieberman Aiden et al. · 2020 · Genome Research
- Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open QuestionsLeonid A. Mirny, Job Dekker · 2021 · Cold Spring Harbor Perspectives in Biology
- A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methodsMoore, Jill E., Pratt, Henry E., Purcaro, Michael J., Weng, Zhiping · 2020 · Genome Biology
- Genome-wide stability of the DNA replication program in single mammalian cellsSaori Takahashi, Hisashi Miura, Takahiro Shibata, Koji Nagao, Katsuzumi Okumura, Masato Ogata, Chikashi Obuse, Shin‐ichiro Takebayashi, Ichiro Hiratani · 2019 · Nature Genetics
- Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integrationBojana Lucic, Heng‐Chang Chen, Maja Kuzman, Eduard Valera Zorita, Julia Wegner, Vera Minneker, Wei Wang, Raffaele Fronza, Stefanie Laufs, Manfred Schmidt et al. · 2019 · Nature Communications
- Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shockRay, Judhajeet, Munn, Paul R., Vihervaara, Anniina, Lewis, James J., Ozer, Abdullah, Danko, Charles G., Lis, John T. · 2019 · Proceedings of the National Academy of Sciences
- Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cellsLei Chang, Mengfan Li, S. Shao, Chen C. Li, Shan-Shan Ai, Boxin Xue, Yingping Hou, Yiwen Zhang, Ruifeng Li, Xiao-Ying Fan et al. · 2020 · Protein & Cell
- Transcription-mediated supercoiling regulates genome folding and loop formationMaria Victoria Neguembor, Laura Martin, Álvaro Castells-García, Pablo Aurelio Gómez-García, Chiara Vicario, Davide Carnevali, Jumana AlHaj Abed, Alba Granados, Rubén Sebastián-Pérez, Francesco Sottile et al. · 2021 · Molecular Cell
- Transcription-factor-mediated supervision of global genome architecture maintains B cell identityTimothy M. Johanson, Aaron T. L. Lun, Hannah D. Coughlan, Tania Tan, Gordon K. Smyth, Stephen L. Nutt, Rhys S. Allan · 2018 · Nature Immunology
- A TAD boundary is preserved upon deletion of the CTCF-rich Firre locusA. Rasim Barutcu, Philipp G. Maass, Jordan P. Lewandowski, Catherine L. Weiner, John L. Rinn · 2018 · Nature Communications
- CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanismAnders S. Hansen · 2020 · Nucleus
- Coming full circle: On the origin and evolution of the looping model for enhancer–promoter communicationPopay, Tessa M., Dixon, Jesse R. · 2022 · Journal of Biological Chemistry
- A requirement for STAG2 in replication fork progression creates a targetable synthetic lethality in cohesin-mutant cancersGourish Mondal, Meredith Stevers, Benjamin Goode, Alan Ashworth, David A. Solomon · 2019 · Nature Communications
- CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functionsAnjali Kaushal, Giriram Mohana, Julien Dorier, İsa Özdemir, A. Omer, P. Cousin, Anastasiia I. Semenova, M. Taschner, Oleksandr Dergai, F. Marzetta et al. · 2021 · Nature Communications
- Epigenetic Reprogramming in Early Animal DevelopmentZhenhai Du, Ke Zhang, Wei Xie · 2021 · Cold Spring Harbor Perspectives in Biology
- Cohesin subunit RAD21: From biology to diseaseHaizi Cheng, Nenggang Zhang, Debananda Pati · 2020 · Gene
- Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem CellsAna Cuadrado, Daniel Giménez-Llorente, Aleksandar Kojic, Miriam Rodríguez-Corsino, Yasmina Cuartero, Guillermo Martín‐Serrano, Gonzalo Goméz-López, Marc A. Martı́-Renom, Ana Losada · 2019 · Cell Reports
- STAG2 mutations alter CTCF-anchored loop extrusion, reduce cis-regulatory interactions and EWSR1-FLI1 activity in Ewing sarcoma.D. Surdez, Sakina Zaidi, S. Grossetête, K. Laud-Duval, A. Ferré, Lieke Mous, Thomas Vourc’h, F. Tirode, G. Pierron, V. Raynal et al. · 2021 · Cancer Cell
- The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivoCrispatzu, Giuliano, Rehimi, Rizwan, Pachano, Tomas, Bleckwehl, Tore, Cruz-Molina, Sara, Xiao, Cally, Mahabir, Esther, Bazzi, Hisham, Rada-Iglesias, Alvaro · 2021 · Nature Communications
- Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nucleiLeah F. Rosin, Son C. Nguyen, Eric F. Joyce · 2018 · PLoS Genetics
- CTCF: a Swiss-army knife for genome organization and transcription regulationLuca Braccioli, Elzo de Wit · 2019 · Essays in Biochemistry
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- A Brownian ratchet model for DNA loop extrusion by the cohesin complexTorahiko L. Higashi, Minzhe Tang, Georgii E. Pobegalov, Frank Uhlmann, Maxim I. Molodtsov · 2021 · eLife
- Fluid-like chromatin: Toward understanding the real chromatin organization present in the cellKazuhiro Maeshima, Sachiko Tamura, Jeffrey C. Hansen, Yuji Itoh · 2020 · Current Opinion in Cell Biology
- TOP2B: The First Thirty YearsCaroline A. Austin, Ka C. Lee, Rebecca L. Swan, Mushtaq M. Khazeem, Catriona M. Manville, Peter Cridland, Achim Treumann, Andrew Porter, Nick J. Morris, Ian G. Cowell · 2018 · International Journal of Molecular Sciences
- Hi-C analysis: from data generation to integrationKoustav Pal, M. Forcato, F. Ferrari · 2018 · Biophysical Reviews
- Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemiaMinjun Yang, Mattias Vesterlund, Ioannis Siavelis, Larissa Helena Moura‐Castro, Anders Castor, Thoas Fioretos, Rozbeh Jafari, Henrik Lilljebjörn, Duncan T. Odom, Linda Olsson et al. · 2019 · Nature Communications
- DNA Methylation Regulates Alternative Polyadenylation via CTCF and the Cohesin ComplexVishal Nanavaty, Elizabeth W. Abrash, Changjin Hong, Sunho Park, Emily E. Fink, Zhuangyue Li, Thomas J. Sweet, Jeffrey Bhasin, Srinidhi Singuri, Byron Lee et al. · 2020 · Molecular Cell
- Principles of 3D compartmentalization of the human genomeMichael H. Nichols, Victor G. Corces · 2021 · Cell Reports
- Organization of fast and slow chromatin revealed by single-nucleosome dynamicsS. S. Ashwin, Tadasu Nozaki, Kazuhiro Maeshima, Masaki Sasai · 2019 · Proceedings of the National Academy of Sciences
- Promoter-Enhancer Communication Occurs Primarily within Insulated NeighborhoodsFei Sun, Constantinos Chronis, Michael Kronenberg, Xiao‐Fen Chen, Trent Su, Fides D. Lay, Kathrin Plath, Siavash K. Kurdistani, Michael Carey · 2018 · Molecular Cell
- Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell IdentityXiaotian Zhang, Mira Jeong, Xingfan Huang, Xue Qing David Wang, Xinyu Wang, Wanding Zhou, Muhammad S. Shamim, Haley Gore, Pamela Himadewi, Yushuai Liu et al. · 2020 · Molecular Cell
- Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cellsZohar Meir, Zohar Mukamel, Elad Chomsky, Aviezer Lifshitz, Amos Tanay · 2020 · Nature Genetics
- Unraveling the 3D Genome Architecture in Plants: Present and FutureWeizhi Ouyang, Dan Xiong, Guoliang Li, Xingwang Li · 2020 · Molecular Plant
- Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell MaintenanceJessica Armida Bertolini, Rebecca Favaro, Yanfen Zhu, Miriam Pagin, Chew Yee Ngan, Chee‐Hong Wong, Harianto Tjong, Marit Willemijn Vermunt, Ben Martynoga, Cristiana Barone et al. · 2019 · Cell stem cell
- Multiscale modeling of genome organization with maximum entropy optimizationXingcheng Lin, Yifeng Qi, Andrew P. Latham, Bin Zhang · 2021 · The Journal of Chemical Physics
- Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domainsAmanda Khoury, Joanna Achinger-Kawecka, Saul A. Bert, Grady C. Smith, Hugh J. French, Phuc‐Loi Luu, Timothy J. Peters, Qian Du, Aled Parry, Fátima Valdés‐Mora et al. · 2020 · Nature Communications
- Visualizing the Role of Boundary Elements in Enhancer-Promoter CommunicationMoe Yokoshi, Segawa Kazuma, Takashi Fukaya · 2020 · Molecular Cell
- New insights into genome folding by loop extrusion from inducible degron technologiesElzo de Wit, Elphège Pierre Nora · 2022 · Nature Reviews Genetics
- Widespread contribution of transposable elements to the rewiring of mammalian 3D genomesMayank N. K. Choudhary, Kara Quaid, Xiaoyun Xing, Heather K. Schmidt, Ting Wang · 2023 · Nature Communications
- SARS-CoV-2 restructures host chromatin architectureRuo-Yu Wang, Joo-Hyung Lee, Jieun Kim, Feng Xiong, Lana Al Hasani, Yuqian Shi, Erin N Simpson, Xiaoyu Zhu, Yi-Ting Chen, P. Shivshankar et al. · 2023 · Nature Microbiology
- Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional controlValentina Casà, Macarena Moronta Gines, Eduardo Gade Gusmao, Johan A. Slotman, Anne Zirkel, Nataša Josipović, Edwin Oole, Wilfred F. J. van IJcken, Adriaan B. Houtsmuller, Argyris Papantonis et al. · 2020 · Genome Research
- CRISPR-mediated multiplexed live cell imaging of nonrepetitive genomic loci with one guide RNA per locusPatricia A. Clow, Menghan Du, Nathaniel Jillette, Aziz Taghbalout, Jacqueline Jufen Zhu, Albert W. Cheng · 2022 · Nature Communications
- Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin foldingMattia Conte, Ehsan Irani, Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Mario Nicodemi · 2022 · Nature Communications
- SMC Complexes: Universal DNA Looping Machines with Distinct RegulatorsMarjon S. van Ruiten, Benjamin D. Rowland · 2018 · Trends in Genetics
- Visualizing the genome in high resolution challenges our textbook understandingMelike Lakadamyali, Maria Pia Cosma · 2020 · Nature Methods
- Topology in soft and biological matterLuca Tubiana, Gareth P. Alexander, Agnese Barbensi, Dorothy Buck, Julyan H. E. Cartwright, Mateusz Chwastyk, Marek Cieplak, Ivan Coluzza, Simon Čopar, David J. Craik et al. · 2024 · Physics Reports
- DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundariesLaura Wiehle, Graeme J. Thorn, Günter Raddatz, Christopher T. Clarkson, Karsten Rippe, Frank Lyko, Achim Breiling, Vladimir B. Teif · 2019 · Genome Research
- TADs and their borders: free movement or building a wall?Li-Hsin Chang, Sourav Ghosh, D. Noordermeer · 2019 · Journal of Molecular Biology
- Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AMLZuzana Tóthová, Anne-Laure Valton, Rebecca A. Gorelov, Mounica Vallurupalli, John Michael Krill-Burger, Amie L. Holmes, Catherine C. Landers, J. Erika Haydu, Edyta Małolepsza, Christina R. Hartigan et al. · 2020 · JCI Insight
- BRD4 orchestrates genome folding to promote neural crest differentiationRicardo Linares-Saldana, Wonho Kim, N. Bolar, Hao-Yue Zhang, Bailey A. Koch-Bojalad, Sora Yoon, P. Shah, Ashley Karnay, Daniel S. Park, Jennifer M. Luppino et al. · 2021 · Nature Genetics
- The Birth of the 3D Genome during Early Embryonic DevelopmentClemens B. Hug, Juan M. Vaquerizas · 2018 · Trends in Genetics
- The condensin holocomplex cycles dynamically between open and collapsed statesJe‐Kyung Ryu, Allard J. Katan, Eli O. van der Sluis, Thomas Wisse, Ralph de Groot, Christian H. Haering, Cees Dekker · 2020 · Nature Structural & Molecular Biology
- Regulation of the RNA polymerase II pre-initiation complex by its associated coactivatorsSohail Malik, Robert G. Roeder · 2023 · Nature Reviews Genetics
- Integrating ChIP-seq with other functional genomics dataShan Jiang, Ali Mortazavi · 2018 · Briefings in Functional Genomics
- NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domainsPriscillia Lhoumaud, Sana Badri, Javier Rodriguez-Hernaez, Theodore Sakellaropoulos, Gunjan Sethia, Andreas Kloetgen, MacIntosh Cornwell, Sourya Bhattacharyya, Ferhat Ay, Richard Bonneau et al. · 2019 · Nature Communications
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- Oncogenic super-enhancer formation in tumorigenesis and its molecular mechanismsQunying Jia, Shuhua Chen, Yuan Tan, Yuejin Li, Faqing Tang · 2020 · Experimental & Molecular Medicine
- Epigenome editing strategies for the functional annotation of CTCF insulatorsTarjan, Daniel R., Flavahan, William A., Bernstein, Bradley E. · 2019 · Nature Communications
- TADCompare: An R Package for Differential and Temporal Analysis of Topologically Associated DomainsKellen G. Cresswell, Mikhail G. Dozmorov · 2020 · Frontiers in Genetics
- CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clustersHavva Ortabozkoyun, Pin‐Yao Huang, Hyunwoo Cho, Varun K. Narendra, Gary LeRoy, Edgar González-Buendía, Jane A. Skok, Aristotelis Tsirigos, Esteban O. Mazzoni, Danny Reinberg · 2022 · Nature Genetics
- Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammationZhiyang Chen, Elias Moris Amro, Friedrich Reinhard Becker, Martin Hölzer, Seyed Mohammad Mahdi Rasa, Sospeter Ngoci Njeru, Bing Han, Simone Di Sanzo, Yu-Lin Chen, Duozhuang Tang et al. · 2018 · The Journal of Experimental Medicine
- 3D ATAC-PALM: super-resolution imaging of the accessible genomeLiangqi Xie, Peng Dong, Xingqi Chen, Tsung-Han S. Hsieh, Sambashiva Banala, Margherita De Marzio, Brian P. English, Yifeng Qi, Seol Kyoung Jung, Kyong-Rim Kieffer-Kwon et al. · 2020 · Nature Methods
- Reorganization of 3D genome structure may contribute to gene regulatory evolution in primatesIttai E. Eres, Kaixuan Luo, Chiaowen Joyce Hsiao, Lauren E. Blake, Yoav Gilad · 2019 · PLoS Genetics
- Common DNA sequence variation influences 3-dimensional conformation of the human genomeDavid U. Gorkin, Yunjiang Qiu, Ming Hu, Kipper Fletez‐Brant, Tristin Liu, Anthony D. Schmitt, Amina Noor, Joshua Chiou, Kyle J. Gaulton, Jonathan L. Sebat et al. · 2019 · Genome biology
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- multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experimentsJohn C. Stansfield, Kellen G. Cresswell, Mikhail G. Dozmorov · 2019 · Bioinformatics
- Combined Cohesin–RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic SyndromesYotaro Ochi, Ayana Kon, Toyonori Sakata, Masahiro Marshall Nakagawa, Naotaka Nakazawa, Masanori Kakuta, Keisuke Kataoka, Haruhiko Koseki, Manabu Nakayama, Daisuke Morishita et al. · 2020 · Cancer Discovery
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- The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organizationDaniel M. Ibrahim, Stefan Mundlos · 2020 · Current Opinion in Genetics & Development
- Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selectionQiang Wu, Ya Guo, Yujia Lu, Jingwei Li, Ya Guo, Zhilian Jia · 2020 · Genome biology
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- Polymer Modeling Predicts Chromosome Reorganization in SenescenceM. Chiang, D. Michieletto, C. Brackley, Nattaphong Rattanavirotkul, H. Mohammed, D. Marenduzzo, T. Chandra · 2019 · Cell Reports
- Mechanistic modeling of chromatin folding to understand functionChris A. Brackley, Davide Marenduzzo, Nick Gilbert · 2020 · Nature Methods
- The Myc-associated zinc finger protein (MAZ) works together with CTCF to control cohesin positioning and genome organizationTiaojiang Xiao, Xin Li, Gary Felsenfeld · 2021 · Proceedings of the National Academy of Sciences
- High-resolution, genome-wide mapping of positive supercoiling in chromosomesMonica S. Guo, Ryo Kawamura, Megan L. Littlehale, J. Marko, M. Laub · 2021 · bioRxiv
- The Evf2 ultraconserved enhancer lncRNA functionally and spatially organizes megabase distant genes in the developing forebrainCajigas, Ivelisse, Chakraborty, Abhijit, Swyter, Kelsey R., Luo, Hao, Bastidas, Monique, Nigro, Maximilliano, Morris, Elizabeth R., Chen, Sean, VanGompel, Michael J.W., Leib, David et al. · 2018 · Molecular Cell
- Forces driving the three‐dimensional folding of eukaryotic genomesÁlvaro Rada-Iglesias, Frank G. Grosveld, Argyris Papantonis · 2018 · Molecular Systems Biology
- Architecture and Dynamics of Meiotic ChromosomesSarah N. Ur, Kevin D. Corbett · 2021 · Annual Review of Genetics
- Transcriptional enhancers and their communication with gene promotersRay-Jones, Helen, Spivakov, Mikhail · 2021 · Cellular and Molecular Life Sciences
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- Biomolecular Condensates and Gene Activation in Development and DiseaseBenjamin R. Sabari · 2020 · Developmental Cell
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