Cohesin Loss Eliminates All Loop Domains

Rao, Suhas S.P., Huang, Su-Chen, Glenn St Hilaire, Brian, Engreitz, Jesse M., Perez, Elizabeth M., Kieffer-Kwon, Kyong-Rim, Sanborn, Adrian L., Johnstone, Sarah E. +14 more·2017·Cell

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Items 201–300 of 1,002

  1. Conformation of sister chromatids in the replicated human genome
    Michael Mitter, Catherina Gasser, Zsuzsanna Takács, Christoph C. H. Langer, Wen Tang, Gregor Jessberger, Charlie T. Beales, Eva Neuner, Stefan Ludwig Ameres, Jan‐Michael Peters et al. · 2020 · Nature
  2. Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness
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  3. The solid and liquid states of chromatin
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  5. CTCF and R-loops are boundaries of cohesin-mediated DNA looping
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  6. Emerging themes in cohesin cancer biology
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  7. Transcriptional Regulation by (Super)Enhancers: From Discovery to Mechanisms
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  8. Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes
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  9. Condensed but liquid-like domain organization of active chromatin regions in living human cells
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  10. Epigenetic regulation in cancer
    Minzhi Gu, Bo Ren, Yuan Fang, Jie Ren, Xiaohong Liu, Xing Wang, Feihan Zhou, Ruiling Xiao, Xiyuan Luo, Lei You et al. · 2024 · MedComm
  11. Cohesin residency determines chromatin loop patterns
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  12. The role of chromatin loop extrusion in antibody diversification
    Yu Zhang, Xuefei Zhang, Hai‐Qiang Dai, Hongli Hu, Frederick W. Alt · 2022 · Nature reviews. Immunology
  13. Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topology
    Barrington, Christopher, Georgopoulou, Dimitra, Pezic, Dubravka, Varsally, Wazeer, Herrero, Javier, Hadjur, Suzana · 2019 · Nature Communications
  14. Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?
    Mustafa Mir, Wendy A. Bickmore, Eileen E. M. Furlong, Geeta J. Narlikar · 2019 · Development
  15. RNA polymerase II is required for spatial chromatin reorganization following exit from mitosis
    Shu Zhang, Nadine Übelmesser, Nataša Josipović, Giada Forte, Johan A. Slotman, Michael Chiang, Henrike Johanna Gothe, Eduardo Gade Gusmao, Christian Becker, Janine Altmüller et al. · 2021 · Science Advances
  16. Structural variations in cancer and the 3D genome
    Frank P. B. Dubois, Nikos Sidiropoulos, Joachim Weischenfeldt, Rameen Beroukhim · 2022 · Nature reviews. Cancer
  17. The chromosome folding problem and how cells solve it
    Dekker, Job, Mirny, Leonid A. · 2024 · Cell
  18. Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals
    M. Jordan Rowley, Axel Poulet, Michael H. Nichols, Brianna J. Bixler, Adrian L. Sanborn, Elizabeth A. Brouhard, Karen E. Hermetz, Hannah Linsenbaum, Györgyi Csankovszki, Erez Lieberman Aiden et al. · 2020 · Genome Research
  19. Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions
    Leonid A. Mirny, Job Dekker · 2021 · Cold Spring Harbor Perspectives in Biology
  20. A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods
    Moore, Jill E., Pratt, Henry E., Purcaro, Michael J., Weng, Zhiping · 2020 · Genome Biology
  21. Genome-wide stability of the DNA replication program in single mammalian cells
    Saori Takahashi, Hisashi Miura, Takahiro Shibata, Koji Nagao, Katsuzumi Okumura, Masato Ogata, Chikashi Obuse, Shin‐ichiro Takebayashi, Ichiro Hiratani · 2019 · Nature Genetics
  22. Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration
    Bojana Lucic, Heng‐Chang Chen, Maja Kuzman, Eduard Valera Zorita, Julia Wegner, Vera Minneker, Wei Wang, Raffaele Fronza, Stefanie Laufs, Manfred Schmidt et al. · 2019 · Nature Communications
  23. Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock
    Ray, Judhajeet, Munn, Paul R., Vihervaara, Anniina, Lewis, James J., Ozer, Abdullah, Danko, Charles G., Lis, John T. · 2019 · Proceedings of the National Academy of Sciences
  24. Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells
    Lei Chang, Mengfan Li, S. Shao, Chen C. Li, Shan-Shan Ai, Boxin Xue, Yingping Hou, Yiwen Zhang, Ruifeng Li, Xiao-Ying Fan et al. · 2020 · Protein & Cell
  25. Transcription-mediated supercoiling regulates genome folding and loop formation
    Maria Victoria Neguembor, Laura Martin, Álvaro Castells-García, Pablo Aurelio Gómez-García, Chiara Vicario, Davide Carnevali, Jumana AlHaj Abed, Alba Granados, Rubén Sebastián-Pérez, Francesco Sottile et al. · 2021 · Molecular Cell
  26. Transcription-factor-mediated supervision of global genome architecture maintains B cell identity
    Timothy M. Johanson, Aaron T. L. Lun, Hannah D. Coughlan, Tania Tan, Gordon K. Smyth, Stephen L. Nutt, Rhys S. Allan · 2018 · Nature Immunology
  27. A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus
    A. Rasim Barutcu, Philipp G. Maass, Jordan P. Lewandowski, Catherine L. Weiner, John L. Rinn · 2018 · Nature Communications
  28. CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanism
    Anders S. Hansen · 2020 · Nucleus
  29. Coming full circle: On the origin and evolution of the looping model for enhancer–promoter communication
    Popay, Tessa M., Dixon, Jesse R. · 2022 · Journal of Biological Chemistry
  30. A requirement for STAG2 in replication fork progression creates a targetable synthetic lethality in cohesin-mutant cancers
    Gourish Mondal, Meredith Stevers, Benjamin Goode, Alan Ashworth, David A. Solomon · 2019 · Nature Communications
  31. CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions
    Anjali Kaushal, Giriram Mohana, Julien Dorier, İsa Özdemir, A. Omer, P. Cousin, Anastasiia I. Semenova, M. Taschner, Oleksandr Dergai, F. Marzetta et al. · 2021 · Nature Communications
  32. Epigenetic Reprogramming in Early Animal Development
    Zhenhai Du, Ke Zhang, Wei Xie · 2021 · Cold Spring Harbor Perspectives in Biology
  33. Cohesin subunit RAD21: From biology to disease
    Haizi Cheng, Nenggang Zhang, Debananda Pati · 2020 · Gene
  34. Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem Cells
    Ana Cuadrado, Daniel Giménez-Llorente, Aleksandar Kojic, Miriam Rodríguez-Corsino, Yasmina Cuartero, Guillermo Martín‐Serrano, Gonzalo Goméz-López, Marc A. Martı́-Renom, Ana Losada · 2019 · Cell Reports
  35. STAG2 mutations alter CTCF-anchored loop extrusion, reduce cis-regulatory interactions and EWSR1-FLI1 activity in Ewing sarcoma.
    D. Surdez, Sakina Zaidi, S. Grossetête, K. Laud-Duval, A. Ferré, Lieke Mous, Thomas Vourc’h, F. Tirode, G. Pierron, V. Raynal et al. · 2021 · Cancer Cell
  36. The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo
    Crispatzu, Giuliano, Rehimi, Rizwan, Pachano, Tomas, Bleckwehl, Tore, Cruz-Molina, Sara, Xiao, Cally, Mahabir, Esther, Bazzi, Hisham, Rada-Iglesias, Alvaro · 2021 · Nature Communications
  37. Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei
    Leah F. Rosin, Son C. Nguyen, Eric F. Joyce · 2018 · PLoS Genetics
  38. CTCF: a Swiss-army knife for genome organization and transcription regulation
    Luca Braccioli, Elzo de Wit · 2019 · Essays in Biochemistry
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    Anthony M. D’Ippolito, Ian C. McDowell, Alejandro Barrera, Linda K. Hong, Sarah M. Leichter, Luke C. Bartelt, Christopher M. Vockley, William H. Majoros, Alexias Safi, Lingyun Song et al. · 2018 · Cell Systems
  40. A Brownian ratchet model for DNA loop extrusion by the cohesin complex
    Torahiko L. Higashi, Minzhe Tang, Georgii E. Pobegalov, Frank Uhlmann, Maxim I. Molodtsov · 2021 · eLife
  41. Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell
    Kazuhiro Maeshima, Sachiko Tamura, Jeffrey C. Hansen, Yuji Itoh · 2020 · Current Opinion in Cell Biology
  42. TOP2B: The First Thirty Years
    Caroline A. Austin, Ka C. Lee, Rebecca L. Swan, Mushtaq M. Khazeem, Catriona M. Manville, Peter Cridland, Achim Treumann, Andrew Porter, Nick J. Morris, Ian G. Cowell · 2018 · International Journal of Molecular Sciences
  43. Hi-C analysis: from data generation to integration
    Koustav Pal, M. Forcato, F. Ferrari · 2018 · Biophysical Reviews
  44. Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia
    Minjun Yang, Mattias Vesterlund, Ioannis Siavelis, Larissa Helena Moura‐Castro, Anders Castor, Thoas Fioretos, Rozbeh Jafari, Henrik Lilljebjörn, Duncan T. Odom, Linda Olsson et al. · 2019 · Nature Communications
  45. DNA Methylation Regulates Alternative Polyadenylation via CTCF and the Cohesin Complex
    Vishal Nanavaty, Elizabeth W. Abrash, Changjin Hong, Sunho Park, Emily E. Fink, Zhuangyue Li, Thomas J. Sweet, Jeffrey Bhasin, Srinidhi Singuri, Byron Lee et al. · 2020 · Molecular Cell
  46. Principles of 3D compartmentalization of the human genome
    Michael H. Nichols, Victor G. Corces · 2021 · Cell Reports
  47. Organization of fast and slow chromatin revealed by single-nucleosome dynamics
    S. S. Ashwin, Tadasu Nozaki, Kazuhiro Maeshima, Masaki Sasai · 2019 · Proceedings of the National Academy of Sciences
  48. Promoter-Enhancer Communication Occurs Primarily within Insulated Neighborhoods
    Fei Sun, Constantinos Chronis, Michael Kronenberg, Xiao‐Fen Chen, Trent Su, Fides D. Lay, Kathrin Plath, Siavash K. Kurdistani, Michael Carey · 2018 · Molecular Cell
  49. Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity
    Xiaotian Zhang, Mira Jeong, Xingfan Huang, Xue Qing David Wang, Xinyu Wang, Wanding Zhou, Muhammad S. Shamim, Haley Gore, Pamela Himadewi, Yushuai Liu et al. · 2020 · Molecular Cell
  50. Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells
    Zohar Meir, Zohar Mukamel, Elad Chomsky, Aviezer Lifshitz, Amos Tanay · 2020 · Nature Genetics
  51. Unraveling the 3D Genome Architecture in Plants: Present and Future
    Weizhi Ouyang, Dan Xiong, Guoliang Li, Xingwang Li · 2020 · Molecular Plant
  52. Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance
    Jessica Armida Bertolini, Rebecca Favaro, Yanfen Zhu, Miriam Pagin, Chew Yee Ngan, Chee‐Hong Wong, Harianto Tjong, Marit Willemijn Vermunt, Ben Martynoga, Cristiana Barone et al. · 2019 · Cell stem cell
  53. Multiscale modeling of genome organization with maximum entropy optimization
    Xingcheng Lin, Yifeng Qi, Andrew P. Latham, Bin Zhang · 2021 · The Journal of Chemical Physics
  54. Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains
    Amanda Khoury, Joanna Achinger-Kawecka, Saul A. Bert, Grady C. Smith, Hugh J. French, Phuc‐Loi Luu, Timothy J. Peters, Qian Du, Aled Parry, Fátima Valdés‐Mora et al. · 2020 · Nature Communications
  55. Visualizing the Role of Boundary Elements in Enhancer-Promoter Communication
    Moe Yokoshi, Segawa Kazuma, Takashi Fukaya · 2020 · Molecular Cell
  56. New insights into genome folding by loop extrusion from inducible degron technologies
    Elzo de Wit, Elphège Pierre Nora · 2022 · Nature Reviews Genetics
  57. Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes
    Mayank N. K. Choudhary, Kara Quaid, Xiaoyun Xing, Heather K. Schmidt, Ting Wang · 2023 · Nature Communications
  58. SARS-CoV-2 restructures host chromatin architecture
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  59. Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional control
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  60. CRISPR-mediated multiplexed live cell imaging of nonrepetitive genomic loci with one guide RNA per locus
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  61. Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding
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  62. SMC Complexes: Universal DNA Looping Machines with Distinct Regulators
    Marjon S. van Ruiten, Benjamin D. Rowland · 2018 · Trends in Genetics
  63. Visualizing the genome in high resolution challenges our textbook understanding
    Melike Lakadamyali, Maria Pia Cosma · 2020 · Nature Methods
  64. Topology in soft and biological matter
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  65. DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries
    Laura Wiehle, Graeme J. Thorn, Günter Raddatz, Christopher T. Clarkson, Karsten Rippe, Frank Lyko, Achim Breiling, Vladimir B. Teif · 2019 · Genome Research
  66. TADs and their borders: free movement or building a wall?
    Li-Hsin Chang, Sourav Ghosh, D. Noordermeer · 2019 · Journal of Molecular Biology
  67. Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML
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  68. BRD4 orchestrates genome folding to promote neural crest differentiation
    Ricardo Linares-Saldana, Wonho Kim, N. Bolar, Hao-Yue Zhang, Bailey A. Koch-Bojalad, Sora Yoon, P. Shah, Ashley Karnay, Daniel S. Park, Jennifer M. Luppino et al. · 2021 · Nature Genetics
  69. The Birth of the 3D Genome during Early Embryonic Development
    Clemens B. Hug, Juan M. Vaquerizas · 2018 · Trends in Genetics
  70. The condensin holocomplex cycles dynamically between open and collapsed states
    Je‐Kyung Ryu, Allard J. Katan, Eli O. van der Sluis, Thomas Wisse, Ralph de Groot, Christian H. Haering, Cees Dekker · 2020 · Nature Structural & Molecular Biology
  71. Regulation of the RNA polymerase II pre-initiation complex by its associated coactivators
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  72. Integrating ChIP-seq with other functional genomics data
    Shan Jiang, Ali Mortazavi · 2018 · Briefings in Functional Genomics
  73. NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains
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  74. Chromatin Hyperacetylation Impacts Chromosome Folding by Forming a Nuclear Subcompartment
    Celeste D. Rosencrance, Haneen Ammouri, Qi Yu, Tiffany Ge, Emily Jane Rendleman, Stacy A. Marshall, Kyle P. Eagen · 2020 · Molecular Cell
  75. Oncogenic super-enhancer formation in tumorigenesis and its molecular mechanisms
    Qunying Jia, Shuhua Chen, Yuan Tan, Yuejin Li, Faqing Tang · 2020 · Experimental & Molecular Medicine
  76. Epigenome editing strategies for the functional annotation of CTCF insulators
    Tarjan, Daniel R., Flavahan, William A., Bernstein, Bradley E. · 2019 · Nature Communications
  77. TADCompare: An R Package for Differential and Temporal Analysis of Topologically Associated Domains
    Kellen G. Cresswell, Mikhail G. Dozmorov · 2020 · Frontiers in Genetics
  78. CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters
    Havva Ortabozkoyun, Pin‐Yao Huang, Hyunwoo Cho, Varun K. Narendra, Gary LeRoy, Edgar González-Buendía, Jane A. Skok, Aristotelis Tsirigos, Esteban O. Mazzoni, Danny Reinberg · 2022 · Nature Genetics
  79. Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation
    Zhiyang Chen, Elias Moris Amro, Friedrich Reinhard Becker, Martin Hölzer, Seyed Mohammad Mahdi Rasa, Sospeter Ngoci Njeru, Bing Han, Simone Di Sanzo, Yu-Lin Chen, Duozhuang Tang et al. · 2018 · The Journal of Experimental Medicine
  80. 3D ATAC-PALM: super-resolution imaging of the accessible genome
    Liangqi Xie, Peng Dong, Xingqi Chen, Tsung-Han S. Hsieh, Sambashiva Banala, Margherita De Marzio, Brian P. English, Yifeng Qi, Seol Kyoung Jung, Kyong-Rim Kieffer-Kwon et al. · 2020 · Nature Methods
  81. Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates
    Ittai E. Eres, Kaixuan Luo, Chiaowen Joyce Hsiao, Lauren E. Blake, Yoav Gilad · 2019 · PLoS Genetics
  82. Common DNA sequence variation influences 3-dimensional conformation of the human genome
    David U. Gorkin, Yunjiang Qiu, Ming Hu, Kipper Fletez‐Brant, Tristin Liu, Anthony D. Schmitt, Amina Noor, Joshua Chiou, Kyle J. Gaulton, Jonathan L. Sebat et al. · 2019 · Genome biology
  83. Chromatin architecture transitions from zebrafish sperm through early embryogenesis
    Candice L. Wike, Yixuan Guo, Mengyao Tan, Ryohei Nakamura, Dana Klatt Shaw, Noèlia Díaz, Aneasha F. Whittaker-Tademy, Neva C. Durand, Erez Lieberman Aiden, Juan M. Vaquerizas et al. · 2021 · Genome Research
  84. multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments
    John C. Stansfield, Kellen G. Cresswell, Mikhail G. Dozmorov · 2019 · Bioinformatics
  85. Combined Cohesin–RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes
    Yotaro Ochi, Ayana Kon, Toyonori Sakata, Masahiro Marshall Nakagawa, Naotaka Nakazawa, Masanori Kakuta, Keisuke Kataoka, Haruhiko Koseki, Manabu Nakayama, Daisuke Morishita et al. · 2020 · Cancer Discovery
  86. PRC1 collaborates with SMCHD1 to fold the X-chromosome and spread Xist RNA between chromosome compartments
    Chen‐Yu Wang, David Colognori, Hongjae Sunwoo, Danni Wang, Jeannie T. Lee · 2019 · Nature Communications
  87. The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organization
    Daniel M. Ibrahim, Stefan Mundlos · 2020 · Current Opinion in Genetics & Development
  88. Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection
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  89. Chromatin Architectural Changes during Cellular Senescence and Aging
    Luyang Sun, Ruofan Yu, Weiwei Dang · 2018 · Genes
  90. Polymer Modeling Predicts Chromosome Reorganization in Senescence
    M. Chiang, D. Michieletto, C. Brackley, Nattaphong Rattanavirotkul, H. Mohammed, D. Marenduzzo, T. Chandra · 2019 · Cell Reports
  91. Mechanistic modeling of chromatin folding to understand function
    Chris A. Brackley, Davide Marenduzzo, Nick Gilbert · 2020 · Nature Methods
  92. The Myc-associated zinc finger protein (MAZ) works together with CTCF to control cohesin positioning and genome organization
    Tiaojiang Xiao, Xin Li, Gary Felsenfeld · 2021 · Proceedings of the National Academy of Sciences
  93. High-resolution, genome-wide mapping of positive supercoiling in chromosomes
    Monica S. Guo, Ryo Kawamura, Megan L. Littlehale, J. Marko, M. Laub · 2021 · bioRxiv
  94. The Evf2 ultraconserved enhancer lncRNA functionally and spatially organizes megabase distant genes in the developing forebrain
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  95. Forces driving the three‐dimensional folding of eukaryotic genomes
    Álvaro Rada-Iglesias, Frank G. Grosveld, Argyris Papantonis · 2018 · Molecular Systems Biology
  96. Architecture and Dynamics of Meiotic Chromosomes
    Sarah N. Ur, Kevin D. Corbett · 2021 · Annual Review of Genetics
  97. Transcriptional enhancers and their communication with gene promoters
    Ray-Jones, Helen, Spivakov, Mikhail · 2021 · Cellular and Molecular Life Sciences
  98. Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains
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  99. Biomolecular Condensates and Gene Activation in Development and Disease
    Benjamin R. Sabari · 2020 · Developmental Cell
  100. Chromosome-level organization of the regulatory genome in the Drosophila nervous system
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