Molecular Architecture of the Mouse Nervous System

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Items 1,901–2,000 of 2,708

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2. Astrocytic Connexin43 in Alzheimer's disease: mechanisms, interaction with P2 receptors, and therapeutic potential
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4. Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte shifts in epileptogenesis beyond the hippocampus
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7. RefTM: reference-guided topic modeling of single-cell chromatin accessibility data
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8. Single-cell analysis reveals specific neuronal transition during mouse corticogenesis
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9. Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq
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10. Bayesian Rare Variant Analysis Identifies Novel Schizophrenia Putative Risk Genes
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11. Almost 40 years of studying homeobox genes in C. elegans
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13. HC-HA/PTX3 from Human Amniotic Membrane Induced Differential Gene Expressions in DRG Neurons: Insights into the Modulation of Pain
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14. Spatially Aware Domain Adaptation Enables Cell Type Deconvolution from Multi‐Modal Spatially Resolved Transcriptomics
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15. Anxiety-like behavior and altered hippocampal activity in a transgenic mouse model of Fabry disease
    Kai K. Kummer, Jeiny Luna Choconta, Marie-Luise Edenhofer, Archana Bajpai, Gopuraja Dharmalingam, Theodora Kalpachidou, David Andrew Collier, Michaela Kress · 2025 · Neurobiology of Disease
16. Divergent combinations of enhancers encode spatial gene expression
    Danni Hong, Muya Shu, Jiamao Liu, Lifang Liu, Hao Cheng, Ming Zhu, Yi Du, Bo Xu, Di Hu, Zhiyong Liu et al. · 2025 · Nature Communications
17. Sparse deconvolution of cell type medleys in spatial transcriptomics
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19. Partial FAM19A5 deficiency in mice leads to disrupted spine maturation, hyperactivity, and an altered fear response
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20. Direct and bisulfite-free 5-methylcytosine and 5-hydroxymethylcytosine sequencing at single-cell resolution with scTAPS and scCAPS +
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21. Targeting necrotic lipid release in tumors enhances immunosurveillance and cancer immunotherapy of glioblastoma
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22. Foxa2 and Pet1 Direct and Indirect Synergy Drive Serotonergic Neuronal Differentiation
    Begüm Aydın, Michael L. Sierk, Mireia Moreno‐Estellés, Link Tejavibulya, Nikathan Kumar, Nuria Flames, Shaun Mahony, Esteban O. Mazzoni · 2022 · Frontiers in Neuroscience
23. Meso-seq for in-depth transcriptomics in ultra-low amounts of FACS-purified neuronal nuclei
    Daniella Apelblat, Ori Roethler, Lidor Bitan, Hadas Keren‐Shaul, Ivo Spiegel · 2022 · Cell Reports Methods
24. Detecting Adult Enteric Neurogenesis in the Context of Adult ENS Homeostasis
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25. scEvoNet: a gradient boosting-based method for prediction of cell state evolution
    Aleksandr Kotov, Andrei Y. Zinovyev, Anne Helene Monsoro-Burq · 2023 · BMC Bioinformatics
26. AllenDigger, a Tool for Spatial Expression Data Visualization, Spatial Heterogeneity Delineation, and Single-Cell Registration Based on the Allen Brain Atlas
    Mengdi Wang, Liangchen Zhuo, Wenji Ma, Qian Wu, Yan Zhuo, Xiaoqun Wang · 2023 · The Journal of Physical Chemistry A
27. Distinct Features of Interictal Activity Predict Seizure Localization and Burden in a Mouse Model of Childhood Epilepsy
    William F. Tobin, Matthew C. Weston · 2023 · Journal of Neuroscience
28. A comparison of the impact on neuronal transcriptome and cognition of rAAV5 transduction with three different doses in the mouse hippocampus
    Yi-Si Liu, Mengling Wang, Neng-Yuan Hu, Ziming Li, Jiali Wu, Hao Li, Jingting Li, Xiaowen Li, Jian‐Ming Yang, Tianming Gao et al. · 2023 · Frontiers in Molecular Neuroscience
29. scEVOLVE: cell-type incremental annotation without forgetting for single-cell RNA-seq data
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30. The Afferent Function of Adipose Innervation
    Yu Wang, Ye Li · 2024 · Diabetes
31. BrainTACO: an explorable multi-scale multi-modal brain transcriptomic and connectivity data resource
    Florian Ganglberger, Dominic Kargl, Markus Töpfer, Julien Hernandez-Lallement, Nathan Lawless, Francesc Fernández-Albert, Wulf E. Haubensak, Katja Bühler · 2024 · Communications Biology
32. A role for leucine-rich, glioma inactivated 1 in regulating pain sensitivity
    Adham Farah, Ryan Patel, Piotr Poplawski, Benjamin J Wastie, Mandy Tseng, Allison M Barry, Omar Daifallah, Akash Dubb, Ivan Paul, Hoi lao Cheng et al. · 2024 · Brain
33. Shrinkage estimation of gene interaction networks in single-cell RNA sequencing data
    Duong H.T. Vo, Thomas Thorne · 2024 · BMC Bioinformatics
34. New evidence of vascular defects in neurodegenerative diseases revealed by single cell RNA sequencing
    Jiaying Qiu, Siwan Peng, Ruobing Qu, Liucheng Wu, Lingyan Xing, Luzhong Zhang, Junjie Sun · 2024 · Clinical Science
35. Inhibition of Phosphodiesterase 10A Alleviates Pain-like Behavior in Mice
    Tilman Gross, Daniel Stehle, Chantal Nagel et al. · 2024 · Anesthesiology
36. The applications of spinal cord stimulation in diseases with motor disorders, pain, and cognitive disturbance
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37. Large-scale exome sequencing identified 18 novel genes for neuroticism in 394,005 UK-based individuals
    Xinrui Wu, Ze-Yu Li, Liu Yang, Ying Liu, Chen-Jie Fei, Yue‐Ting Deng, Weishi Liu, Bang‐Sheng Wu, Qiang Dong, Jianfeng Feng et al. · 2024 · Nature Human Behaviour
38. Ezrin, a novel marker of ependymal cells, can be used to demonstrate their proliferation regulation after spinal cord injury in mice
    Lin Zhang, Yao-Mei Xu, Ming-Ming Bian, Hua-Zheng Yan, Jian-Xiong Gao, Qian-Hui Bao, Yuqing Chen, Shu‐Qin Ding, Rui Wang, Nan Zhang et al. · 2024 · Neurobiology of Disease
39. Deep clustering via dual-supervised multi-kernel mapping
    Lina Ren, Ruizhang Huang, Shengwei Ma · 2025 · Pattern Recognition
40. Sigma-2 Receptor/Transmembrane Protein 97 in Pain Modulation: Tracing Historical Roots and Current Research Directions
    Veronica M. Hong, Avaneesh Rade, Amulya Bhaskara, Tarik Ehsan, See Hyun Tack, Muhammad Saad Yousuf, Stephen F. Martin, Theodore John Price, Benedict James Kolber · 2025 · ACS Pharmacology & Translational Science
41. Dysregulated synaptic gene expression in oligodendrocytes of spinal and bulbar muscular atrophy
    Madoka Iida, Kentaro Sahashi, Tomoki Hirunagi, Kenji Sakakibara, Kentaro Maeda, Yohei Iguchi, Jiayi Li, Yosuke Ogura, Masaki Iizuka, Tomohiro Akashi et al. · 2025 · JCI Insight
42. Combined statistical-biophysical modeling links ion channel genes to physiology of cortical neuron types
    Yves Bernaerts, Michael Deistler, Pedro J. Gonçalves, Jonas Beck, Marcel Stimberg, Federico Scala, Andreas Savas Tolias, Jakob H. Macke, Dmitry Kobak, Philipp Berens · 2025 · Patterns
43. Submodular sketches of single-cell RNA-seq measurements
    Wei Yang, Jacob Matthew Schreiber, Jeffrey A. Bilmes, William Stafford Noble · 2020 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
44. Neonatal Proinflammatory Stress and Expression of Neuroinflammation-Associated Genes in the Rat Hippocampus
    Alexey A. Kvichansky, Liya V. Tret’yakova, Maria N. Volobueva, А. О. Манолова, M. Yu. Stepanichev, Mikhail V. Onufriev, Yulia V. Moiseeva, Н. А. Лазарева, Alexey P. Bolshakov, Natalia V. Gulyaeva · 2021 · Biochemistry (Moscow)
45. Single-cell sequencing paints diverse pictures of the brain
    Aparna Bhaduri, Tomasz Jan Nowakowski · 2018 · Nature
46. Neurotransmitter‐gated ion channels, still front and centre stage
    Derek Bowie · 2021 · The Journal of Physiology
47. Distinct oligodendrocyte populations have spatial preference and injury-specific responses
    Elisa M. Floriddia, Shupei Zhang, David van Bruggen, João P. Gonçalves dos Santos, Müge Altinkök, Enric Llorens-Bobadilla, Jonas Frisén, Gonçalo Castelo‐Branco · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
48. Analysis of brain atrophy and local gene expression in genetic frontotemporal dementia
    André Altmann, David M. Cash, Martina Bocchetta, Carolin Heller, Regina Hertfelder Reynolds, Katrina M. Moore, Rhian S. Convery, David Lee Thomas, John Cornelis Van Swieten, Fermín Moreno et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
49. Impaired adult hippocampal neurogenesis in Alzheimer’s disease is mediated by microRNA-132 deficiency and can be restored by microRNA-132 replacement
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50. The molecular logic of synaptic wiring at the single cell level
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51. Molecular roadmap of the healthy stress response in the mouse hippocampus
    Lukas von Ziegler, Amalia Floriou‐Servou, Rebecca Waag, Rebecca R Das Gupta, Oliver Sturman, Katharina Gapp, Christina A. Maat, Tobias Kockmann, Han-Yu Lin, Sian N. Duss et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
52. Single-cell transcriptomic analysis unveils spinal motor neuron subtype diversity underpinning the water-to-land transition in vertebrates
    Ee Shan Liau, Suoqin Jin, Yen‐Chung Chen, Wei-Szu Liu, Luok Wen Yong, Chang-Tai Tsai, Maëliss Calon, Jr‐Kai Yu, Yi‐Hsien Su, Stéphane Nedelec et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
53. A 3-step acne system containing solubilized benzoyl peroxide versus clindamycin-benzoyl peroxide.
    Diane M. Thiboutot, Lawrence F. Eichenfield, Alan R. Shalita, J.Q. Del Rosso, Leonard J. Swinyer, Emil A Tanghetti, Eduardo H. Tschen, Lisa Parr · 2009 · PubMed
54. Landscape of human spinal cord cell type diversity at midgestation
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55. Autism spectrum disorder trios from consanguineous populations are enriched for rare biallelic variants, identifying 32 new candidate genes
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56. LANTSA: Landmark-based transferable subspace analysis for single-cell and spatial transcriptomics
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57. Glutamatergic neuron types in the amygdala of the urodele amphibian Pleurodeles waltl
    Astrid Deryckere, Jamie Woych, Eliza C.B. Jaeger, Maria Antonietta Tosches · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
58. Brain region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice
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59. Single Cell transcriptional analysis of ex vivo models of cortical and hippocampal development identifies unique longitudinal trends
    Daniel K. Krizay, David B. Goldstein, Michael J. Boland · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
60. Interspecies blastocyst complementation generates functional rat cell-derived forebrain tissues in mice
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61. The Cell Subtypes Selection by Genes (CSSG) algorithm for discovering cell populations in high resolution
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62. Joint cell type identification in spatial transcriptomics and single-cell RNA sequencing data
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63. Astrocytic Neuroligins Are Not Required for Synapse Formation or a Normal Astrocyte Cytoarchitecture
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64. The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury
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65. Droplet-based Single-cell Joint Profiling of Histone Modification and Transcriptome
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66. Identification of a convergent spinal neuron population that encodes itch
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67. Pain persists in mice lacking both Substance P and CGRPα signaling
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68. Peripheral gating of pain by glial endozepine
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69. Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
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70. Prevalent co-release of glutamate and GABA throughout the mouse brain
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71. Brain-wide monosynaptic single-neuron connectivity with ROInet-seq
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72. Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice
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73. Spontaneously regenerative corticospinal neurons in mice
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74. Brain Data Alchemy Project: Meta-Analysis of Preprocessed Public Transcriptional Profiling Data in the Gemma Database (v.2023) v1
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75. Monocarboxylate transporter 2 is required for the maintenance of myelin and axonal integrity by oligodendrocytes
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76. Persistent interferon signaling that causes sensory neuron plasticity and pain in arthritis
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77. Complement C3aR deletion does not attenuate neurodegeneration in a tauopathy model or alter acute inflammation-induced gene expression changes in the brain
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78. A single-cell transcriptomic atlas maps cerebellar astrocyte diversity and uncovers the transcriptional code underlying their maturation trajectories
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79. Rare coding mutations identify 36 large-effect risk genes in obsessive-compulsive disorder and chronic tic disorders
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80. Denoising image-based spatial transcriptomics data with DenoIST
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81. Chd8 haploinsufficiency leads to molecular layer heterotopias and age-dependent cortical expansion
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82. Morphological pseudotime ordering and fate mapping reveals diversification of cerebellar inhibitory interneurons
    Wang, Wendy Xueyi, Lefebvre, Julie L. · 2020
83. ELP1 , the Gene Mutated in Familial Dysautonomia, Is Required for Normal Enteric Nervous System Development and Maintenance and for Gut Epithelium Homeostasis
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84. BrainCellR: A precise cell type nomenclature pipeline for comparative analysis across brain single-cell datasets
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85. Diminished angiogenic capacity in the hippocampus compared to the cortex indicates regional vulnerability
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86. Research advances in structure and functions of complement C1q/tumor necrosis factor-related protein 4: A review
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87. Meta-Analysis of Gene Expression in Bulk-Processed Post-Mortem Spinal Cord from ALS Patients and Normal Controls
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88. Barcoded Rabies In Situ Connectomics for high-throughput reconstruction of neural circuits
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89. Management of Gastrointestinal Symptoms in Parkinson’s Disease
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90. Spatiotemporal profiling reveals the impact of caloric restriction in the aging mammalian brain
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91. Na + /K + -ATPase Modulates Purinergic P2X3 Receptor Function to Drive Bone Cancer Pain
    Songqiang Huang, Bo Peng, Wanting Dong · 2025 · Research
92. R-Spondin1 Regulates Fate of Enteric Neural Progenitors via Differential LGR4/5/6 Expression in Mice and Humans
    Melanie Scharr, Simon Scherer, Jörg Fuchs, Bernhard Hirt, Peter H. Neckel · 2025 · Cellular and Molecular Gastroenterology and Hepatology
93. Single‐nucleus transcriptomic profiling reveals temporal dynamics of neuroinflammation and myelin repair after intracerebral haemorrhage
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94. Targeting sex-specific DRG inflammation and neurofibrosis to prevent Bortezomib-induced neuropathy
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95. Micro-scale control of oligodendrocyte morphology and myelination by the intellectual disability-linked protein acyltransferase ZDHHC9
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96. Transcriptome of the human C2 dorsal root ganglia in C1–2 arthrodesis surgery: insight for neck pain
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97. From identity to function: unveiling the cellular complexity of hypothalamic feeding circuits
    Sheridan H. Littleton, John A. Tadross, Giles S.H. Yeo · 2025 · Reviews in Endocrine and Metabolic Disorders
98. Neuropeptide CRH prevents premature differentiation of OPCs following CNS injury and in early postnatal development
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99. In vitro derivation of midbrain dopaminergic neurons from porcine embryonic stem cells in multi-dimensional conditions
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100. Pathophysiology of Primary Familial Brain Calcification
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