Molecular Architecture of the Mouse Nervous System

Zeisel, Amit, Hochgerner, Hannah, Lönnerberg, Peter, Johnsson, Anna, Memic, Fatima, van der Zwan, Job, Häring, Martin, Braun, Emelie +12 more·2018·Cell

DOI 10.1016/j.cell.2018.06.021

Cited by (2,708)

Items 1,801–1,900 of 2,708

A telencephalon cell type atlas for goldfish reveals diversity in the evolution of spatial structure and cell types
Muhammad Tibi, Stav Biton, Hannah Hochgerner · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
AhR restricts axon regeneration by balancing neuronal stress and growth response after injury
Dalia Halawani, Yiqun Wang, Jiaxi Li, Daniel Halperin, Haofei Ni, Molly S. Estill, Aarthi Ramakrishnan, Li Shen, Arthur Sefiani, Cédric G. Geoffroy et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Hengqi Betty Zheng, Benjamin A. Doran, Kyle Kimler, Alison Yu, Victor Tkachev, Veronika Niederlová, Kayla Cribbin, Ryan Fleming, Brandi Bratrude, Kayla Betz et al. · 2023 · eLife
Cell type-specific dysregulation of gene expression due to Chd8 haploinsufficiency during mouse cortical development
Kristina Yim, Marybeth Baumgartner, Martina Krenzer · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Translatome analysis reveals cellular network in DLK-dependent hippocampal glutamatergic neuron degeneration
Erin M Ritchie, Dilan Acar, Siming Zhong, Qianyi Pu, Yunbo Li, Binhai Zheng, Yishi Jin · 2024 · eLife
Hierarchical Interpretation of Out-of-Distribution Cells Using Bottlenecked Transformer
Qifei Wang, He Zhu, Yiwen Hu, Yanjie Chen, Yuwei Wang, Xuegong Zhang, James Zou, M Kellis, Yue Li, Dianbo Liu et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Control of innate olfactory valence by segregated cortical amygdala circuits
James R Howe, Chung-Lung Chan, Donghyung Lee, Marlon Blanquart, James H. Lee, Laurine Decoster, Haylie K. Romero, Abigail N Zadina, Mackenzie Lemieux, Fergil Mills et al. · 2025 · eLife
The circadian clock regulates scavenging of fluid-borne substrates by brain border-associated macrophages
Helena J. Barr, Sydney K. Caldwell, Justin M. Reimertz, Constanze Depp, Alec J. Walker, Samuel E. Marsh, Anushree S. Gupte, Maximilian Hingerl, Jasmin Patel, Sang-O Park et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
Heterogeneous brain distribution of bumetanide following systemic administration in rats
Wolfgang Löscher, Martina Gramer, Kerstin Römermann · 2024 · Biopharmaceutics & Drug Disposition
Neurotoxins Acting on TRPV1—Building a Molecular Template for the Study of Pain and Thermal Dysfunctions
Florian Beignon, Margaux Notais, Sylvie Diochot, Anne Baron, Ziad Fajloun, Hélène Tricoire-Leignel, Guy Lenaers, César Mattei · 2025 · Toxins
Activational and organizational actions of gonadal hormones on the sexual dimorphism of the α6-subunit containing GABAA receptor in Wistar rats with neuropathic pain
Juan Miguel Pizaña-Encarnación, María J Escoto-Rosales, Ana Mara Islas-Espinoza, Diana Karen Morales-Galindo, Myrna Déciga‐Campos, Blanca Gómez Quintanar, Rebeca Reyes, Vinicio Granados‐Soto, Alonso Fernández‐Guasti · 2025 · Hormones and Behavior
Downregulation of STAT3 transcription factor reverses synaptotoxic phenotype of reactive astrocytes associated with prion diseases
Rajesh Kushwaha, Kara Molesworth, Natallia Makarava, Ilia V. Baskakov · 2025 · Acta Neuropathologica Communications
Meta-analysis of the brain transcriptomes of multiple genetic mouse models of schizophrenia highlights dysregulation in striatum and thalamus
Kira A. Perzel Mandell, Sean Simmons, Ajay Nadig, Zohreh Farsi, Wei-Chao Huang, Sameer Aryal, Min Jee Kwon, Bryan J. Song, Kira S. Brenner, Nate Shepard et al. · 2025 · Translational Psychiatry
A spatial atlas of the complement system uncovers unique expression patterns in postnatal brain development in mice
Yingying Zhang, Brianna R. Watson, Ajitanuj Rattan, Tyrone Lee, Smriti Chawla, Ludwig Geistlinger, Yilin Guan, Finley B. Lord, Minghe Ma, Takashi Miwa et al. · 2025 · Nature Communications
Microbiota regulation of gut-brain neuroimmune crosstalk in early life
Purnima Ravisankar, Daniel Sen Hoi Wong, Melody Yue Zeng · 2025 · International Immunology
Sympathetic nerve dysfunction exacerbates skin inflammation in atopic dermatitis
Su Yu, Yao Xu, Yuxin Li, Xiaoyu Pan, Zixin Zhao, Chaoying Gu, Huibin Yin, Qianwen Shan, Yuemeng Wu, Yu Wang et al. · 2025 · Journal of Allergy and Clinical Immunology
The axon initial segment-associated microglia regulate neuronal activity and visual perception
Yaping Wang, Qiushi Wang, Chen Gao, Shu He, Cheng Wei, Jia Song, Xinli Liu, Xiaoli Liu, Shi Feng, Wen Yao et al. · 2026 · Cell Research
Persistent interferon signaling causes sensory neuron plasticity and pain before and during arthritis
Jie Su, Ming-Dong Zhang, Jussi Kupari, Dongoh Kwak, Laurence D. Picton, Bingze Xu, Leandro Flores do Nascimento, Yizhou Hu, Alejandro González, Dmitry Usoskin et al. · 2026 · Nature Neuroscience
Benchmarking RNA velocity methods across 17 independent studies
Ya Hong Luo, Jun Ren, Q. Yang, Zhiyu You, Ying Zhou, Qingqing Qin, Qiyuan Li · 2026 · Cell Reports Methods
Focal white matter lesions drive grey matter inflammation and synapse loss
Omar de Faria, Stavros Vagionitis, Andrea López-López, Michael Perry, Joseph J. Y. Wong, Leslie A. Kirby, Bastien Hervé, Balazs Viktor Varga, Eneritz Agirre, Sabrina Ghosh et al. · 2026 · Nature
Curing the brain: in search for new astrocyte-specific therapies
Alexei Verkhratsky, C. Justin Lee, Heejung Chun, Christian Göritz, Tibor Harkany, Jae‐Hun Lee, Sangkyu Lee, Maria Lindskog, Wuhyun Koh, Jan Mulder et al. · 2026 · Experimental & Molecular Medicine
Glial cells in neuropathic pain
Temugin Berta, Arkady Khoutorsky, Jing Xu, Ru‐Rong Ji · 2026 · Physiological Reviews
Whole-genome duplication shaped cell-type evolution in the vertebrate brain
Yuanzhen Zhu, S Q Zhang, Jiankai Wei, Diego Dolgetta-Garcia, Katia Jindrich, Huimin Liu, Chenggang Shi, Rongrong Pan, Yuehua Chen, Y Xu et al. · 2026 · Nature
Meta-topologies define distinct anatomical classes of brain tumours linked to histology and survival
Julius M. Kernbach, Daniel Delev, Georg Neuloh et al. · 2022 · Brain Communications
Deciphering the skeletal interoceptive circuitry to control bone homeostasis
Yefeng Wu, Jiusi Guo, Zhen Chen, Fengwei Zhang, Bkc Chow, Zhuofan Chen, Kwk Yeung, Wei Qiao · 2025 · BMEMat
Establishment and behavioural characterization of a novel constitutive P2X7 receptor knockout mouse line
Iven-Alex von Mücke-Heim, Judit Oldekamp, Michael W. Metzger, Sarah Kläffgen, Hao Tang, Sandra M. Walser, Nina Dedic, Gerhard Rammes, Florian Holsboer, Wolfgang Wurst et al. · 2025 · Purinergic Signalling
Neuroglia in hepatic encephalopathy
Magdalena Zielińska, Mariusz P. Popek, Jan Albrecht · 2025 · Handbook of clinical neurology
Established and emerging roles of protein kinases in regulating primary sensory neurons in injury-and inflammation-associated pain
David Zimmermann, Michaela Kress, I. Nagy · 2025 · Expert Opinion on Therapeutic Targets
A role for fibroblast and mural cell subsets in a nerve ligation model of neuropathic pain?
Sara Villa‐Hernández, Julia M. Vlachaki Walker, Zoe Lee Hore, Laura Fedele, Irene Zebochin, Yuening Li, Harvey Davis, Takashi Kanda, Fumitaka Shimizu, Leonie S. Taams et al. · 2025 · Brain Behavior and Immunity
Effect of Corticosterone on Gene Expression in the Context of Global Hippocampal Transcription
Grzegorz Roman Juszczak, Adrian Mateusz Stankiewicz, Rafał R. Starzyński, Magdalena Ogłuszka, Aneta Jaszczyk · 2025 · International Journal of Molecular Sciences
Gustatory-neuron-supplied R-spondin-2 is required for taste bud replenishment
Xu Jiang, Alan de Araujo, Ranhui Xi, Kaihua Luo, Mingyue Han, Xiaoli Lin, Chanyi Lu, Minliang Zhou, Kurt David Hankenson, Robert F. Margolskee et al. · 2025 · Stem Cell Reports
Artemin sensitises mouse (Mus musculus) and naked mole-rat (Heterocephalus glaber) sensory neurons in vitro
Lanhui Qiu, Ewan St. John Smith · 2025 · Journal of Comparative Physiology A
Enteric glial cells mediate gut immunity and repair
Antonia Wallrapp, Daping Yang, Isaac M. Chiu · 2021 · Trends in Neurosciences
Gut Factors Mediating the Physiological Impact of Bariatric Surgery
Maigen Michelle Bethea, Darleen A. Sandoval · 2022 · Current Diabetes Reports
A companion to the preclinical common data elements and case report forms for neuropathology studies in epilepsy research. A report of the TASK3 WG2 Neuropathology Working Group of the ILAE / AES Joint Translational Task Force
Eleonora Aronica, Devin K. Binder, Meinrad Drexel, Chrysanthy Ikonomidou, Shilpa D. Kadam, Günther Sperk, Christian Steinhäuser · 2022 · Epilepsia Open
Somatic CNV Detection by Single-Cell Whole-Genome Sequencing in Postmortem Human Brain
Diego Pérez‐Rodríguez, Maria Kalyva, Catherine Santucci, Christos Proukakis · 2022 · Methods in molecular biology
A cell marker‐based clustering strategy (cmCluster) for precise cell type identification of scRNA‐seq data
Yuwei Huang, Huidan Chang, Xiaoyi Chen, Jiayue Meng, Mengyao Han, Tao Huang, Liyun Yuan, Guoqing Zhang · 2023 · Quantitative Biology
MASI enables fast model-free standardization and integration of single-cell transcriptomics data
Yang Xu, Rafael Kramann, Rachel Patton McCord, Sikander Hayat · 2023 · Communications Biology
Genome-wide association study of hippocampal blood-oxygen-level-dependent-cerebral blood flow correlation in Chinese Han population
Hui Xue, Xiao‐Jun Xu, Zhihan Yan, Jingliang Cheng, Long Jiang Zhang, Wenzhen Zhu, Guangbin Cui, Quan Zhang, Shijun Qiu, Zhenwei Yao et al. · 2023 · iScience
Spatial cell-type enrichment predicts mouse brain connectivity
Shenghuan Sun, Justin Torok, Christopher Mezias, Daren Ma, Ashish Raj · 2023 · Cell Reports
A novel Nav1.8-FLPo driver mouse for intersectional genetics to uncover the functional significance of primary sensory neuron diversity
Pascale Malapert, Guillaume Robert, Elena Brunet, Jean Chemin, Emmanuel Bourinet, Aziz Moqrich · 2024 · iScience
Prioritization of Kidney Cell Types Highlights Myofibroblast Cells in Regulating Human Blood Pressure
Mahboube Ganji‐Arjenaki, Zoha Kamali, Εvangelos Εvangelou, Helen R. Warren, He Gao, Georgios Ntritsos, Niki L. Dimou, Tõnu Esko, Reedik Mägi, Lili A. Milani et al. · 2024 · Kidney International Reports
In situ Patch-seq analysis of microglia reveals a lack of stress genes as found in FACS-isolated microglia
Olga Bakina, Thomas Conrad, Nina Mitic, Ramon Oliveira Vidal, Tessa Obrusnik, Somesh Sai, Christiané Nolte, Marcus Semtner, Helmut Kettenmann · 2024 · PLoS ONE
Metabolic control of microglia
Garcia-Segura, Monica Emili, Pluchino, Stefano, Peruzzotti-Jametti, Luca · 2024 · Advances in Neurobiology
Targeting TREM2 signaling shows limited impact on cerebrovascular calcification
Sucheta Sridhar, Yingyue Zhou, Adiljan Ibrahim, Sérgio Bertazzo, Tania Wyss, Amanda Swain, Upasana Maheshwari, Sheng‐Fu Huang, Marco Colonna, Annika Keller · 2024 · Life Science Alliance
Oligodendrocyte Slc48a1 (Hrg1) encodes a functional heme transporter required for myelin integrity
John H. Stockley, Adrien M. Vaquie, Zhaoyang Xu, Theresa Bartels, Gregory D. Jordan, Staffan Holmqvist, Simon Gunter, Guy Lam, Daniel Yamamoto, Rini H Pek et al. · 2024 · Glia
Cell‐Type Specific Circuits in the Mammillary Body for Place and Object Recognition Memory
Lanfang Li, Yiqing Guo, Wei Jing, Xiaomei Tang, Jinyu Zeng, Zhenye Hou, Yige Song, Aodi He, Hao Li, Ling‐Qiang Zhu et al. · 2025 · Advanced Science
RFC and VDR -mediated genetic regulation of brain folate transport in patients with multiple sclerosis
O. Skavinska, Zoia I. Rossokha, Liliia Fishchuk, Н. Г. Горовенко · 2025 · Human Gene
Temporal refinement of Dach1 expression contributes to the development of somatosensory neurons
Tünde Szemes, Alba Sabaté San José, Abdulkader Azouz, Maren Sitte, Gabriela Salinas, Younès Achouri, Sadia Kricha, Laurence Ris, Kristy Red‐Horse, Eric Bellefroid et al. · 2025 · The EMBO Journal
Cell-type-specific dysregulation of gene expression due to Chd8 haploinsufficiency during mouse cortical development
Kristina Yim, Marybeth Baumgartner, Martina Krenzer, María F. Rosales Larios, Guillermina Hill-Terán, Timothy Nottoli, Rebecca Muhle, James P. Noonan · 2025 · Cell Genomics
Inducible Uniparental Chromosome Disomy to Probe Genomic Imprinting at Single-cell Level in Brain and Beyond.
F. Pauler, Q. J. Hudson, Susanne Laukoter, S. Hippenmeyer · 2021 · Neurochemistry International
Using a new three-dimensional CUBIC tissue-clearing method to examine the brain during experimental cerebral malaria
Julia Matsuo-Dapaah, Michelle Sue Jann Lee, Ken J. Ishii, Kazuki Tainaka, Cevayir Coban · 2021 · International Immunology
Molecular markers of brain cholesterol homeostasis are unchanged despite a smaller brain mass in a mouse model of cholesteryl ester storage disease
Amal A. Aqul, Charina M. Ramirez, Adam M. Lopez, Dennis K. Burns, Joyce J. Repa, Stephen D. Turley · 2021 · Lipids
Artificial pore blocker acts specifically on voltage-gated potassium channel isoform KV1.6
Andrei M. Gigolaev, Владислав А. Лушпа, Ernesto Lopes Pinheiro-Júnior et al. · 2022 · Journal of Biological Chemistry
Disease mutations of human α3 Na+/K+-ATPase define extracellular Na+ binding/occlusion kinetics at ion binding site III
Cristina Moreno, Song Jiao, Sho T. Yano · 2022 · PNAS Nexus
Modulating the activity of human nociceptors with a SCN10A promoter-specific viral vector tool
Stephanie Mouchbahani-Constance, Camille Lagard, Justine Schweizer, Isabelle Labonté, Miltiadis Georgiopoulos, Colombe Otis, Manon St. Louis, Éric Troncy, Philippe Sarret, Alfredo Ribeiro‐da‐Silva et al. · 2023 · Neurobiology of Pain
Defining Selective Neuronal Resilience and Identifying Targets for Neuroprotection and Axon Regeneration Using Single-Cell RNA Sequencing: Experimental Approaches
Anne Jacobi, Nicholas M. Tran · 2023 · Methods in molecular biology
Central androgen action reverses hypothalamic astrogliosis and atherogenic risk factors induced by orchiectomy and high-fat diet feeding in male mice
Mauricio D. Dorfman, Thomas Monfeuga, Susan J. Melhorn, Jenny E. Kanter, Jeremy M. Frey, Rachael D. Fasnacht, Anandhakumar Chandran, Emaad Lala, Inmaculada Velasco, Katya B. Rubinow et al. · 2023 · American Journal of Physiology-Endocrinology and Metabolism
Molecular consequences of peripheral Influenza A infection on cell populations in the murine hypothalamus
René Lemcke, Christine Egebjerg, Nicolai T. Berendtsen, Kristoffer Lihme Egerod, Allan Randrup Thomsen, Tune H. Pers, Jan Pravsgaard Christensen, Birgitte Rahbek Kornum · 2023 · eLife
Inhibitory neuron map of sevoflurane induced neurotoxicity model in young primates
Yixuan Niu, Yanyong Cheng, Zhengjie Miao, Jinnan Xu, Hong Jiang, Jia Yan · 2023 · Frontiers in Cellular Neuroscience
Spinal Glycine Receptor Alpha 3 Cells Communicate Sensations of Chemical Itch in Hairy Skin
Hannah M. Weman, Mikaela M. Ceder, Aikeremu Ahemaiti, Kajsa A. Magnusson, Katharina Henriksson, Linn Andréasson, Malin Charlotta Lagerström · 2024 · Journal of Neuroscience
Autoantibodies and Neuropathic Pain
John M. Dawes, David Bennett · 2019 · Oxford University Press eBooks
The impact of different modes of neuronal migration on brain evolution
Fernando García‐Moreno, Zoltán Molnár · 2020 · Elsevier eBooks
New insights into CNS development from multiomics approaches
Laura Solanelles-Farré, Ludovic Telley · 2020 · Current Opinion in Neurobiology
Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma
Elena A. Afanasyeva, Moritz Gartlgruber, Tatsiana Ryl, Bieke Decaesteker, Geertrui Denecker, Gregor Mönke, Umut H. Toprak, Andrés F. Flórez, Alica Torkov, Daniel Dreidax et al. · 2021 · Life Science Alliance
Dexamethasone Modulates Lipopolysaccharide-Induced Expression of Proinflammatory Cytokines in Rat Hippocampus
Liya V. Tret’yakova, Alexey A. Kvichansky, Alexey P. Bolshakov · 2021 · Neurochemical Journal
Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights
Juan A Sánchez, Ana Luisa Gil-Martínez, Alejandro Cisterna‐García, Sonia García-Ruiz, Alicia Gómez-Pascual, Regina Hertfelder Reynolds, Mike A. Nalls, John Hardy, Mina Ryten, Juan Antonio Botía · 2021 · Bioinformatics
Gucy2d selectively marks inhibitory dynorphin neurons in the spinal dorsal horn but is dispensable for pain and itch sensitivity
Elizabeth K. Serafin, Robert Burns, Judy J. Yoo, Mark L. Baccei · 2021 · PAIN Reports
A systematic evaluation of interneuron morphology representations for cell type discrimination
Sophie Laturnus, Dmitry Kobak, Philipp Berens · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
Mapping heritability of obesity by brain cell types
Pascal N. Timshel, Jonatan J. Thompson, Tune H. Pers · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Intra-articular AAV-PHP.S mediated chemogenetic targeting of knee-innervating dorsal root ganglion neurons alleviates inflammatory pain in mice
Sampurna Chakrabarti, Luke A. Pattison, Balint Doleschall · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Anthrax Toxin as a Molecular Platform to Target Nociceptive Neurons and Modulate Pain
Nicole J. Yang, Jörg Isensee, Dylan V. Neel, Sai Man Liu, Han Xiong Bear Zhang, Andreea Belu, Shilpa Palan, Angela Kennedy-Curran, Pascal Röderer, Anja Nitzsche et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Rapid tolerance to morphine in the myenteric neurons of the small intestine is independent of β-arrestin-2 and mediated by PKC
Karan H. Muchhala, Joanna C. Jacob, Imran Alam, Shahzeb Hasan, Aliyeen Khan, Minho Kang, William L. Dewey, Hamid I. Akbarali · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Activation of endogenous retroviruses during brain development causes neuroinflammation
Marie E. Jönsson, R. Garza, Yogita Sharma, Rebecca Petri, E. Södersten, Jenny G. Johansson, P. Johansson, Diahann A. M. Atacho, Karolina Pircs, Sofia Madsen et al. · 2020 · bioRxiv
HieRFIT: Hierarchical Random Forest for Information Transfer
Yasin Kaymaz, Florian Ganglberger, Ming Tang, Francesc Fernández-Albert, Nathan Lawless, Timothy B. Sackton · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Expansion-Assisted Iterative-FISH defines lateral hypothalamus spatio-molecular organization
Yuhan Wang, Mark Eddison, Greg M. Fleishman, Martin Weigert, Shengjin Xu, Fredrick E. Henry, Tim Wang, Andrew L. Lemire, Uwe Schmidt, Hui Yang et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Decoding molecular and cellular heterogeneity of nucleus accumbens with high-throughput scRNA-seq and MERFISH
Renchao Chen, Timothy R. Blosser, Mohamed Nadhir Djekidel, Junjie Hao, Aritra Bhattacherjee, Wenqiang Chen, Luis M. Tuesta, Xiaowei Zhuang, Yi Zhang · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
STEEL enables high-resolution delineation of spatiotemporal transcriptomic data
Yamao Chen, Shengyu Zhou, Ming Li · 2022 · Research Square
The Ca 2+ -gated Cl - channel TMEM16A amplifies capillary pericyte contraction reducing cerebral blood flow after ischemia
Nils Korte, Zeki Ilkan, Claire L. Pearson, Thomas Pfeiffer, Prabhav Singhal, Jason R. Rock, Huma Sethi, Dipender Gill, David Attwell, Paolo Tammaro · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
TRPA1 analgesia is mediated by kappa opioid receptors
Evangelia Semizoglou, Clive Gentry, Nisha Vastani, Cheryl L. Stucky, David A. Andersson, Stuart Bevan · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
A comprehensive view of cell-type-specific temporal dynamics in human and mouse brains
Ziyu Lu, Melissa Zhang, Jasper Lee, Andras Sziraki, Sonya Anderson, Shaoyu Ge, Peter T. Nelson, Wei You Zhou, Junyue Cao · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Expansion Spatial Transcriptomics
Yuhang Fan, Žaneta Andrusivová, Yunming Wu · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
A subpopulation of peripheral sensory neurons expressing the Mas-related G Protein-Coupled Receptor d (Mrgprd) generates pain hypersensitivity in painful diabetic neuropathy
Dale George, Nirupa D. Jayaraj, Dongjun Ren, Rachel E. Miller, Anne‐Marie Malfait, Richard J. Miller, Daniela Maria Menichella · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Distinct tumor architectures for metastatic colonization of the brain
Siting Gan, Danilo G. Macalinao, Sayyed Hamed Shahoei, Lin Hai Tian, Xin Jin, Harihar Basnet, James Muller, Pranita Atri, Evan Seffar, Walid Khaled Chatila et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
SMART: reference-free deconvolution for spatial transcriptomics using marker-gene-assisted topic models
Chen Xi Yang, Don D. Sin, RT Ng · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Single-nucleus RNA sequencing provides insights into the GL261-GSC syngeneic mouse model of glioblastoma
Laura García-Vicente, Michael Borja, Vanessa Tran, Andrea Álvarez-Vázquez, Raquel Flores-Hernández, Alejandro A. Granados, Aaron McGeever, Yang-Joon Kim, Leah C. Dorman, Angela M. Detweiler et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Spatial and temporal profiling of the complement system uncovered novel functions of the alternative complement pathway in brain development
Yingying Zhang, Brianna R. Watson, Ajitanuj Rattan, Tyrone Lee, Smriti Chawla, Ludwig Geistlinger, Yilin Guan, Minghe Ma, Barbara J. Caldarone, Wen‐Chao Song et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Single cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2R47H Alzheimer’s risk gene mutation
Kevin G. Johnston, Bereket T Berackey, Kristine Minh Tran · 2023 · Research Square
Molecularly stratified hypothalamic astrocytes are cellular foci for obesity
Tibor Harkany, Evgenii O. Tretiakov, Luis Varela, Jasna Jarc, Patrick Rebernik, Sylvia Adriana Newbold, Erik Keimpema, Alexei Verkhratsky, Tamás L. Horváth, Roman A. Romanov · 2024 · Research Square
Single-nuclei histone modification profiling of the adult human central nervous system unveils epigenetic memory of developmental programs
Mukund Kabbe, E. Agirre, Karl E. Carlström, Fabio Baldivia Pohl, N. Ruffin, D. van Bruggen, Mandy Meijer, L. Seeker, Nadine Bestard-Cuche, Alex R. Lederer et al. · 2024 · bioRxiv
Differential control of intestine function by genetically defined enteric neurons
David Shi, Pranav Reddy, Christopher Walker, McKayla E. Marrin, Catherine Siu, Nikhil Sharma · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Meta-atlas of Juvenile and Adult Enteric Neuron scRNA-seq for Dataset Comparisons and Consensus on Transcriptomic Definitions of Enteric Neuron Subtypes
Joseph T. Benthal, Aaron A. May-Zhang, E. Michelle Southard‐Smith · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Single-cell characterization of the human C2 dorsal root ganglion recovered from C1-2 arthrodesis surgery: implications for neck pain
Asta Arendt-Tranholm, Ishwarya Sankaranarayanan, Cathryn Payne, Marisol Mancilla Moreno, Khadijah Mazhar, Natalie Yap, Abby P Chiu, Allison M Barry, Pooja P. Patel, Nikhil Nageshwar Inturi et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
A specific olfactory bulb interneuron subtype Tpbg/5T4 generated at embryonic and neonatal stages
Tsuboi, Akio · 2024 · Frontiers in Neural Circuits
Comparative Physiology and Morphology of BLA‐Projecting NBM/SI Cholinergic Neurons in Mouse and Macaque
Feng Luo, Li Jiang, Niraj S. Desai, Bai Li, Gabrielle V. Watkins, Mark A. G. Eldridge, Anya S. Plotnikova, Arya Mohanty, Alex C. Cummins, Bruno B. Averbeck et al. · 2024 · The Journal of Comparative Neurology
Stimulus-Dependent Expression of Bdnf Is Mediated by ATF2, MYT1L, and EGR1 Transcription Factors
Eli‐Eelika Esvald, Andra Moistus, Karin Lehe, Annela Avarlaid, Anastassia Shubina, Liis Kuusemets, Jürgen Tuvikene, Tõnis Timmusk · 2025 · Journal of Neuroscience
Investigating Mechanically Activated Currents from Trigeminal Neurons of Nonhuman Primates
Karen A. Lindquist, Jennifer M. Mecklenburg, Anahit H. Hovhannisyan, Shivani B. Ruparel, Armen N. Akopian · 2025 · eNeuro
CellMemory: hierarchical interpretation of out-of-distribution cells using bottlenecked transformer
Qifei Wang, He Zhu, Yiwen Hu, Yanjie Chen, Yuwei Wang, Guochao Li, Yun Li, Jinfeng Chen, Xuegong Zhang, James Zou et al. · 2025 · Genome biology
Adrenergic Control of P2Y6 Receptor‐Dependent Phagocytosis in Rodent and Human Microglia
Thomas Deluc, Ariel R. Ase, Marie‐France Dorion, Gilles Maussion, Yeman Tang, R J Lo, Irina Shlaifer, Valerio E. C. Piscopo, Thomas M. Durcan, Stefano Stifani et al. · 2025 · Glia
Astrocytopathy Is Associated with CA1 Synaptic Dysfunction in a Mouse Model of Down Syndrome
Álvaro Fernández‐Blanco, Candela González-Arias, Cèsar Sierra, Alfonsa Zamora‐Moratalla, Gertrudis Perea, Mara Dierssen · 2025 · Cells