Molecular Architecture of the Mouse Nervous System

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1. Additional file 1 of scEvoNet: a gradient boosting-based method for prediction of cell state evolution
   Aleksandr Kotov, Zinovyev, Andrei, Anne Helene Monsoro-Burq · 2024 · Figshare
2. Additional file 5 of Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity
   Roig Adam, Amparo, José A. Martínez‐López, Sophie J. F. van der Spek, Patrick F. Sullivan, August B. SMIT, Matthijs Verhage, Jens Hjerling‐Leffler · 2024 · Figshare
3. Additional file 15 of Transcriptomic analysis of paternal behaviors in prairie voles
   Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
4. Additional file 1 of Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia
   Liu, Jiewei, Shiwu Li, Li, Xiaoyan, Li, Wenqiang, Yang, Yongfeng, Guo, Suqin, Lv, Luxian, Xiao, Xiao, Yao, Yong-Gang, Guan, Fanglin et al. · 2021 · Figshare
5. Additional file 27 of Transcriptomic analysis of paternal behaviors in prairie voles
   Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
6. Additional file 1 of Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity
   Roig Adam, Amparo, José A. Martínez‐López, Sophie J. F. van der Spek, Patrick F. Sullivan, August B. SMIT, Matthijs Verhage, Jens Hjerling‐Leffler · 2024 · Figshare
7. Additional file 2 of GDF11 expressed in the adult brain negatively regulates hippocampal neurogenesis
   Brittany A. Mayweather, Sean M. Buchanan, Lee L. Rubin · 2021 · Figshare
8. Additional file 1 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
   Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Dougherty, Joseph D. · 2024 · Figshare
9. Additional file 2 of The degree of astrocyte activation is predictive of the incubation time to prion disease
   Natallia Makarava, Olga Mychko, Jennifer C. Chang, Kara Molesworth, Ilia V. Baskakov · 2021 · Figshare
10. Additional file 4 of Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
    Luise A. Seeker, Nadine Bestard-Cuche, Sarah Jäkel, Kazakou, Nina-Lydia, Sunniva M. K. Bøstrand, Laura J. Wagstaff, Cholewa-Waclaw, Justyna, Alastair Morris Kilpatrick, David van Bruggen, Mukund Kabbe et al. · 2024 · Figshare
11. Additional file 7 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Dougherty, Joseph D. · 2024 · Figshare
12. Additional file 2 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Joseph D. Dougherty · 2024 · Figshare
13. Additional file 2 of Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
    Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Nilsson, Mats · 2021 · Figshare
14. Additional file 4 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Joseph D. Dougherty · 2024 · Figshare
15. Additional file 2 of Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
    Luise A. Seeker, Nadine Bestard-Cuche, Sarah Jäkel, Kazakou, Nina-Lydia, Sunniva M. K. Bøstrand, Laura J. Wagstaff, Cholewa-Waclaw, Justyna, Alastair Morris Kilpatrick, David van Bruggen, Mukund Kabbe et al. · 2024 · Figshare
16. Additional file 1 of Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
    Luise A. Seeker, Nadine Bestard-Cuche, Sarah Jäkel, Kazakou, Nina-Lydia, Sunniva M. K. Bøstrand, Laura J. Wagstaff, Cholewa-Waclaw, Justyna, Alastair Morris Kilpatrick, David van Bruggen, Mukund Kabbe et al. · 2024 · Figshare
17. Additional file 9 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Dougherty, Joseph D. · 2024 · Figshare
18. Additional file 1 of DISC: a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning
    He, Yao, Yuan, Hao, Wu, Cheng, Xie, Zhi · 2020 · Figshare
19. Additional file 5 of geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
    Alsu M. Missarova, Jaison Jain, Butler, Andrew, Shila Ghazanfar, Tim Stuart, Maigan Brusko, Clive Henry Wasserfall, Harry S. Nick, Todd M. Brusko, Atkinson, Mark et al. · 2021 · Figshare
20. Additional file 5 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Dougherty, Joseph D. · 2024 · Figshare
21. Additional file 1 of GDF11 expressed in the adult brain negatively regulates hippocampal neurogenesis
    Brittany A. Mayweather, Sean M. Buchanan, Lee L. Rubin · 2021 · Figshare
22. Additional file 17 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
23. Additional file 1 of X-box binding protein 1 as a key modulator in “healing endothelial cells”, a novel EC phenotype promoting angiogenesis after MCAO
    Chen, Zhuohui, Wang, Xiang, Wu, Haiyue · 2022 · Figshare
24. Additional file 1 of scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies
    Peilin Jia, Hu, Ruifeng, Fangfang Yan, Dai, Yulin, Zhao, Zhongming · 2022 · Figshare
25. Additional file 1 of Notch signaling is activated in knee-innervating dorsal root ganglia in experimental models of osteoarthritis joint pain
    Wang, Lai, Ishihara, Shingo, Li, Jun · 2023 · Figshare
26. Additional file 4 of geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
    Alsu M. Missarova, Jaison Jain, Butler, Andrew, Shila Ghazanfar, Tim Stuart, Maigan Brusko, Clive Henry Wasserfall, Harry S. Nick, Todd M. Brusko, Atkinson, Mark et al. · 2021 · Figshare
27. Additional file 3 of Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
    Agnieszka Geras, Shadi Darvish Shafighi, Kacper Domżał, Igor Filipiuk, Alicja Rączkowska, Szymczak, Paulina, Hosein Toosi, Kaczmarek, Leszek, Koperski, Łukasz, Jens Lagergren et al. · 2024 · Figshare
28. Additional file 3 of Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity
    Roig Adam, Amparo, José A. Martínez‐López, Sophie J. F. van der Spek, Patrick F. Sullivan, August B. SMIT, Matthijs Verhage, Jens Hjerling‐Leffler · 2024 · Figshare
29. Additional file 1 of SpatialDWLS: accurate deconvolution of spatial transcriptomic data
    Dong, Rui, Yuan, Guo-Cheng · 2021 · Figshare
30. Additional file 8 of Modeling zero inflation is not necessary for spatial transcriptomics
    Peiyao Zhao, Zhu, Jiaqiang, Ma, Ying, Zhou, Xiang · 2022 · Figshare
31. Additional file 6 of Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
    Luise A. Seeker, Nadine Bestard-Cuche, Sarah Jäkel, Kazakou, Nina-Lydia, Sunniva M. K. Bøstrand, Laura J. Wagstaff, Cholewa-Waclaw, Justyna, Alastair Morris Kilpatrick, David van Bruggen, Mukund Kabbe et al. · 2024 · Figshare
32. Additional file 18 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Liu, Yan, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
33. Additional file 1 of Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
    Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Nilsson, Mats · 2021 · Figshare
34. Additional file 13 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Liu, Yan, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
35. Additional file 6 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Joseph D. Dougherty · 2024 · Figshare
36. Additional file 1 of GiniClust3: a fast and memory-efficient tool for rare cell type identification
    Dong, Rui, Guo‐Cheng Yuan · 2020 · Figshare
37. Additional file 1 of The glycine receptor alpha 3 subunit mRNA expression shows sex-dependent differences in the adult mouse brain
    Ceder, Mikaela M., Weman, Hannah M., Johansson, Ebba · 2023 · Figshare
38. Additional file 7 of Modeling zero inflation is not necessary for spatial transcriptomics
    Peiyao Zhao, Zhu, Jiaqiang, Ma, Ying, Zhou, Xiang · 2022 · Figshare
39. Additional file 1 of Innate immune response in neuronopathic forms of Gaucher disease confers resistance against viral-induced encephalitis
    Sharon Melamed, Roy Avraham, Deborah E. Rothbard, Noam Erez A, Tomer Israely, Klausner, Ziv, Anthony H. Futerman, Nir Paran, Vitner, Einat B. · 2020 · Figshare
40. Additional file 2 of DISC: a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning
    He, Yao, Yuan, Hao, Wu, Cheng, Xie, Zhi · 2020 · Figshare
41. Additional file 2 of SpatialDWLS: accurate deconvolution of spatial transcriptomic data
    Dong, Rui, Yuan, Guo-Cheng · 2021 · Figshare
42. Additional file 1 of Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
    Agnieszka Geras, Shadi Darvish Shafighi, Kacper Domżał, Igor Filipiuk, Alicja Rączkowska, Szymczak, Paulina, Hosein Toosi, Kaczmarek, Leszek, Koperski, Łukasz, Jens Lagergren et al. · 2024 · Figshare
43. Additional file 6 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
44. Additional file 8 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Joseph D. Dougherty · 2024 · Figshare
45. Additional file 20 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
46. Additional file 4 of Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
    Agnieszka Geras, Shadi Darvish Shafighi, Kacper Domżał, Igor Filipiuk, Alicja Rączkowska, Szymczak, Paulina, Hosein Toosi, Kaczmarek, Leszek, Koperski, Łukasz, Jens Lagergren et al. · 2024 · Figshare
47. Additional file 7 of geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
    Alsu M. Missarova, Jaison Jain, Butler, Andrew, Shila Ghazanfar, Tim Stuart, Maigan Brusko, Clive Henry Wasserfall, Harry S. Nick, Todd M. Brusko, Atkinson, Mark et al. · 2021 · Figshare
48. Additional file 2 of aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
    Li, Jia, Shyr, Yu, Liu, Qi · 2024 · Figshare
49. Additional file 19 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Liu, Yan, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
50. Additional file 28 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
51. Additional file 5 of Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
    Agnieszka Geras, Shadi Darvish Shafighi, Kacper Domżał, Igor Filipiuk, Alicja Rączkowska, Szymczak, Paulina, Hosein Toosi, Kaczmarek, Leszek, Koperski, Łukasz, Jens Lagergren et al. · 2024 · Figshare
52. Additional file 25 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Liu, Yan, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
53. Additional file 7 of The degree of astrocyte activation is predictive of the incubation time to prion disease
    Makarava, Natallia, Olga Mychko, Jennifer C. Chang, Kara Molesworth, Ilia V. Baskakov · 2021 · Figshare
54. Additional file 3 of Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
    Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Nilsson, Mats · 2021 · Figshare
55. Additional file 1 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
56. Additional file 4 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
57. Additional file 1 of aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
    Li, Jia, Yu Shyr, Liu, Qi · 2024 · Figshare
58. Additional file 2 of Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity
    Roig Adam, Amparo, José A. Martínez‐López, Sophie J. F. van der Spek, Patrick F. Sullivan, August B. SMIT, Matthijs Verhage, Jens Hjerling‐Leffler · 2024 · Figshare
59. Additional file 1 of Mouse connective tissue mast cell proteases tryptase and carboxypeptidase A3 play protective roles in itch induced by endothelin-1
    Magnúsdóttir, Elín I., Grujic, Mirjana, Bergman, Jessica · 2020 · Figshare
60. Additional file 5 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Liu, Yan, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
61. Additional file 2 of scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies
    Peilin Jia, Hu, Ruifeng, Fangfang Yan, Dai, Yulin, Zhao, Zhongming · 2022 · Figshare
62. Additional file 2 of Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
    Agnieszka Geras, Shadi Darvish Shafighi, Kacper Domżał, Igor Filipiuk, Alicja Rączkowska, Szymczak, Paulina, Hosein Toosi, Kaczmarek, Leszek, Koperski, Łukasz, Jens Lagergren et al. · 2024 · Figshare
63. Additional file 24 of Transcriptomic analysis of paternal behaviors in prairie voles
    Florian Duclot, Liu, Yan, Samantha K. Saland, Zuoxin Wang, Mohamed Kabbaj · 2022 · Figshare
64. Additional file 5 of Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
    Luise A. Seeker, Nadine Bestard-Cuche, Sarah Jäkel, Kazakou, Nina-Lydia, Sunniva M. K. Bøstrand, Laura J. Wagstaff, Cholewa-Waclaw, Justyna, Alastair Morris Kilpatrick, David van Bruggen, Mukund Kabbe et al. · 2024 · Figshare
65. Additional file 3 of Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
    Luise A. Seeker, Nadine Bestard-Cuche, Sarah Jäkel, Kazakou, Nina-Lydia, Sunniva M. K. Bøstrand, Laura J. Wagstaff, Cholewa-Waclaw, Justyna, Alastair Morris Kilpatrick, David van Bruggen, Mukund Kabbe et al. · 2024 · Figshare
66. Additional file 3 of Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease
    Stuart B. Fass, Bernard Mulvey, Rebecca Chase, Yang, Wei, Din Selmanovic, Sneha M. Chaturvedi, Eric Tycksen, Weiss, Lauren A., Joseph D. Dougherty · 2024 · Figshare
67. Characterisation of cold-selective lamina I spinal projection neurons in the mouse
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