Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
Gillette, Michael A., Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Krug, Karsten, Petralia, Francesca, Li, Yize, Liang, Wen-Wei, Reva, Boris, Krek, Azra, Ji, Jiayi, Song, Xiaoyu, Liu, Wenke, Hong, Runyu, Yao, Lijun, Blumenberg, Lili, Savage, Sara R., Wendl, Michael C., Wen, Bo, Li, Kai, Tang, Lauren C., MacMullan, Melanie A., Avanessian, Shayan C., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Kothadia, Ramani B., Ma, Weiping, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Kawaler, Emily A., Omelchenko, Tatiana, Colaprico, Antonio, Geffen, Yifat, Maruvka, Yosef E., da Veiga Leprevost, Felipe, Wiznerowicz, Maciej, Gümüş, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Heiman, David I., Wyczalkowski, Matthew A., Hiltke, Tara, Mesri, Mehdi, Kinsinger, Christopher R., Boja, Emily S., Omenn, Gilbert S., Chinnaiyan, Arul M., Rodriguez, Henry, Li, Qing Kay, Jewell, Scott D., Thiagarajan, Mathangi, Getz, Gad, Zhang, Bing, Fenyö, David, Ruggles, Kelly V., Cieslik, Marcin P., Robles, Ana I., Clauser, Karl R., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D.R., Carr, Steven A., Webster, Alex, Francis, Alicia, Charamut, Alyssa, Paulovich, Amanda G., Perou, Amy M., Godwin, Andrew K., Karnuta, Andrii, Marrero-Oliveras, Annette, Hindenach, Barbara, Pruetz, Barbara, Kubisa, Bartosz, Druker, Brian J., Birger, Chet, Jones, Corbin D., Valley, Dana R., Rohrer, Daniel C., Zhou, Daniel Cui, Chan, Daniel W., Chesla, David, Clark, David J., Rykunov, Dmitry, Tan, Donghui, Ponomareva, Elena V., Duffy, Elizabeth, Burks, Eric J., Schadt, Eric E., Bergstrom, Erik J., Fedorov, Eugene S., Malc, Ewa, Wilson, George D., Chen, Hai-Quan, Krzystek, Halina M., Liu, Hongwei, Culpepper, Houston, Sun, Hua, Zhang, Hui, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, McGee, John, Ketchum, Karen A., Rodland, Karin D., Robinson, Karna, Hoadley, Katherine A., Suzuki, Kei, Um, Ki Sung, Elburn, Kim, Wang, Liang-Bo, Chen, Lijun, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Wojtyś, Małgorzata, Domagalski, Marcin J., Gritsenko, Marina A., Beasley, Mary B., Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Sun, Meng-Hong, Roehrl, Michael H., Birrer, Michael J., Noble, Michael, Schnaubelt, Michael, Vernon, Michael, Chaikin, Michelle, Krotevich, Mikhail, Khan, Munziba, Selvan, Myvizhi Esai, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Potapova, Olga, Grady, Pamela, McGarvey, Peter B., Mieczkowski, Piotr, Hariharan, Pushpa, Madan, Rashna, Thangudu, Ratna R., Smith, Richard D., Welsh, Robert J., Zelt, Robert, Mehra, Rohit, Matteotti, Ronald, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Markey, Sanford P., Chugh, Seema, Smith, Shaleigh, Tsang, Shirley, Cai, Shuang, Boca, Simina M., Carter, Sonya, Gabriel, Stacey, De Young, Stephanie, Stein, Stephen E., Shankar, Sunita, Krubit, Tanya, Liu, Tao, Skelly, Tara, Bauer, Thomas, Velvulou, Uma, Ozbek, Umut, Petyuk, Vladislav A., Sovenko, Volodymyr, Bocik, William E., Maggio, William W., Chen, Xi, Shi, Yan, Wu, Yige, Hu, Yingwei, Liao, Yuxing, Zhang, Zhen, Shi, Zhiao·2020·Cell
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- Additional file 12 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, lele zhang et al. · 2022 · Figshare
- Additional file 7 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, lele zhang et al. · 2022 · Figshare
- Additional file 4 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Donghui Han, Lu, Yuan, Fa Yang, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Chenghui Jia et al. · 2024 · Figshare
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- Additional file 2 of Energy stress-induced circZFR enhances oxidative phosphorylation in lung adenocarcinoma via regulating alternative splicingMa, Zhifei, Chen, Hao, Xia, Zhijun, You, Jing, Han, Chencheng, Siwei Wang, Xia, Wenjia, Bai, Yongkang, Tongyan Liu, Xu, Lin et al. · 2024 · Figshare
- Additional file 11 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, Zhang, Lele et al. · 2022 · Figshare
- Additional file 1 of Energy stress-induced circZFR enhances oxidative phosphorylation in lung adenocarcinoma via regulating alternative splicingMa, Zhifei, Chen, Hao, Xia, Zhijun, You, Jing, Han, Chencheng, Wang, Siwei, Xia, Wenjia, Bai, Yongkang, Tongyan Liu, Lin Xu et al. · 2024 · Figshare
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- Additional file 2 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Donghui Han, Lu, Yuan, Fa Yang, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Chenghui Jia et al. · 2024 · Figshare
- Additional file 9 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, Zhang, Lele et al. · 2022 · Figshare
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- Additional file 3 of TMPRSS2 is a tumor suppressor and its downregulation promotes antitumor immunity and immunotherapy response in lung adenocarcinomaZhixian Liu, Lu, Qiqi, Zhang, Zhilan, Qiushi Feng, Xiaosheng Wang · 2024 · Figshare
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- Additional file 6 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Donghui Han, Lu, Yuan, Yang, Fa, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Jia, Chenghui et al. · 2024 · Figshare
- Additional file 2 of PARP4 interacts with hnRNPM to regulate splicing during lung cancer progressionYi Fei Lee, Cheryl Zi Jin Phua, Yuan, Ju, Zhang, Bin, Lee, May Yin, Srinivasaraghavan Kannan, Yui Hei Jasper Chiu, Casslynn W.Q. Koh, Choon Kong Yap, Edwin Kok Hao Lim et al. · 2024 · Figshare
- Additional file 8 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, lele zhang et al. · 2022 · Figshare
- Additional file 10 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, lele zhang et al. · 2022 · Figshare
- Additional file 13 of Comparative profiling of single-cell transcriptome reveals heterogeneity of tumor microenvironment between solid and acinar lung adenocarcinomaDianke Li, Yu, Huansha, Junjie Hu, Li, Shaoling, Yilv Yan, Shuangyi Li, Liangdong Sun, Jiang, Gening, Hou, Likun, lele zhang et al. · 2022 · Figshare
- Additional file 5 of Associations between immune cell phenotypes and lung cancer subtypes: insights from mendelian randomization analysisZheng, Jin-Min, Lou, Chen-Xi, Huang, Yu-Liang, Song, Wen-Tao, Luo, Yi-Chen, Guanyong Mo, Tan, Lin-Yuan, Chen, Shang-Wei, Baijun Li · 2024 · Figshare
- Additional file 4 of TMPRSS2 is a tumor suppressor and its downregulation promotes antitumor immunity and immunotherapy response in lung adenocarcinomaZhixian Liu, Lu, Qiqi, Zhang, Zhilan, Qiushi Feng, Xiaosheng Wang · 2024 · Figshare
- Additional file 7 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Donghui Han, Lu, Yuan, Yang, Fa, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Chenghui Jia et al. · 2024 · Figshare
- Additional file 5 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Donghui Han, Lu, Yuan, Yang, Fa, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Chenghui Jia et al. · 2024 · Figshare
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- Additional file 3 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Donghui Han, Lu, Yuan, Yang, Fa, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Chenghui Jia et al. · 2024 · Figshare
- Additional file 3 of Associations between immune cell phenotypes and lung cancer subtypes: insights from mendelian randomization analysisZheng, Jin-Min, Lou, Chen-Xi, Huang, Yu-Liang, Song, Wen-Tao, Luo, Yi-Chen, Guanyong Mo, Tan, Lin-Yuan, Chen, Shang-Wei, Baijun Li · 2024 · Figshare
- Additional file 1 of PARP4 interacts with hnRNPM to regulate splicing during lung cancer progressionYi Fei Lee, Cheryl Zi Jin Phua, Yuan, Ju, Zhang, Bin, Lee, May Yin, Srinivasaraghavan Kannan, Yui Hei Jasper Chiu, Casslynn W.Q. Koh, Choon Kong Yap, Edwin Kok Hao Lim et al. · 2024 · Figshare
- Additional file 2 of Associations between immune cell phenotypes and lung cancer subtypes: insights from mendelian randomization analysisZheng, Jin-Min, Lou, Chen-Xi, Huang, Yu-Liang, Song, Wen-Tao, Luo, Yi-Chen, Guanyong Mo, Tan, Lin-Yuan, Chen, Shang-Wei, Baijun Li · 2024 · Figshare
- Additional file 4 of Associations between immune cell phenotypes and lung cancer subtypes: insights from mendelian randomization analysisZheng, Jin-Min, Lou, Chen-Xi, Huang, Yu-Liang, Song, Wen-Tao, Luo, Yi-Chen, Guanyong Mo, Tan, Lin-Yuan, Chen, Shang-Wei, Baijun Li · 2024 · Figshare
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- Additional file 6 of Associations between immune cell phenotypes and lung cancer subtypes: insights from mendelian randomization analysisZheng, Jin-Min, Lou, Chen-Xi, Huang, Yu-Liang, Song, Wen-Tao, Luo, Yi-Chen, Guanyong Mo, Tan, Lin-Yuan, Chen, Shang-Wei, Baijun Li · 2024 · Figshare
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- Additional file 2 of TMPRSS2 is a tumor suppressor and its downregulation promotes antitumor immunity and immunotherapy response in lung adenocarcinomaZhixian Liu, Lu, Qiqi, Zhang, Zhilan, Qiushi Feng, Xiaosheng Wang · 2024 · Figshare
- Additional file 8 of Functional heterogeneity of cancer-associated fibroblasts with distinct neoadjuvant immunotherapy plus chemotherapy response in esophageal squamous cell carcinomaJiang, Jun, Xu, Chao, Han, Donghui, Lu, Yuan, Yang, Fa, Wang, Jiawei, Yan, Xiaolong, Mu, Xiaorong, Zhang, Jipeng, Chenghui Jia et al. · 2024 · Figshare
- Additional file 1 of Associations between immune cell phenotypes and lung cancer subtypes: insights from mendelian randomization analysisZheng, Jin-Min, Lou, Chen-Xi, Huang, Yu-Liang, Song, Wen-Tao, Luo, Yi-Chen, Guanyong Mo, Tan, Lin-Yuan, Chen, Shang-Wei, Baijun Li · 2024 · Figshare
- Additional file 1 of TMPRSS2 is a tumor suppressor and its downregulation promotes antitumor immunity and immunotherapy response in lung adenocarcinomaZhixian Liu, Lu, Qiqi, Zhang, Zhilan, Qiushi Feng, Xiaosheng Wang · 2024 · Figshare
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