A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Cited by (998)

Items 201–300 of 998

  1. Continuous cell-type diversification in mouse visual cortex development
    Yuan Gao, Cindy T. J. van Velthoven, Changkyu Lee, Emma D. Thomas, Rémi Mathieu, Angela P. Ayala, Stuard Barta, Darren Bertagnolli, Jazmin Campos, Trangthanh Cardenas et al. · 2025 · Nature
  2. Prefrontal Interneurons: Populations, Pathways, and Plasticity Supporting Typical and Disordered Cognition in Rodent Models
    David A. Kupferschmidt, Kirstie A. Cummings, Max E. Joffe, Andrew F. MacAskill, Ruchi Malik, Candela Sánchez-Bellot, Hugo A. Tejeda, Héctor E. Yarur · 2022 · Journal of Neuroscience
  3. Standardizing workflows in imaging transcriptomics with the abagen toolbox
    Ross D. Markello, Aurina Arnatkevičiūtė, Jean‐Baptiste Poline · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  4. Biallelic variants in WARS1 cause a highly variable neurodevelopmental syndrome and implicate a critical exon for normal auditory function
    Sheng‐Jia Lin, Barbara Vona, Hillary M. Porter, Mahmoud Izadi, Kevin Huang, Yves Lacassie, Jill Anne Rosenfeld, Saadullah Khan, Cassidy Petree, Tayyiba Akbar Ali et al. · 2022 · Human Mutation
  5. Integrated analysis of molecular atlases unveils modules driving developmental cell subtype specification in the human cortex
    Patricia R. Nano, Elisa Fazzari, Daria J. Azizad, Antoni Andreu Martija, Claudia V. Nguyen, Sean Wang, Vanna Giang, Ryan L. Kan, Juyoun Yoo, Brittney D Wick et al. · 2025 · Nature Neuroscience
  6. A postnatal molecular switch drives activity-dependent maturation of parvalbumin interneurons
    Monika Moissidis, Leyla Abbasova, Martijn M. Selten, Rafael Alis, Clémence Bernard, Yaiza Domínguez-Canterla, Fazal Oozeer, Shenyue Qin, Audrey Kelly, Laura Mòdol et al. · 2025 · Cell
  7. Development, Diversity, and Death of MGE-Derived Cortical Interneurons
    Rhîannan H. Williams, Therese Riedemann · 2021 · International Journal of Molecular Sciences
  8. The evidence for and consequences of metabotropic glutamate receptor heterodimerization
    Tyler W. McCullock, Paul J. Kammermeier · 2021 · Neuropharmacology
  9. Morpho-electric diversity of human hippocampal CA1 pyramidal neurons
    Eline Jasmijn Mertens, Yoni Leibner, Jean L. Pie, Anna A. Galakhova, Femke Waleboer, Julia Meijer, Tim S. Heistek, René Wilbers, Djai B. Heyer, Natalia A. Goriounova et al. · 2024 · Cell Reports
  10. An Honest Reckoning With the Amygdala and Mental Illness
    Andrew S. Fox, Alexander J. Shackman · 2024 · American Journal of Psychiatry
  11. A Semi-Automated Workflow for Brain Slice Histology Alignment, Registration, and Cell Quantification (SHARCQ)
    Kristoffer Lauridsen, Annie Ly, Emily D. Prévost, Connor J. McNulty, Dillon J. McGovern, Jian Wei Tay, Joseph M. Dragavon, David H. Root · 2022 · eNeuro
  12. Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data
    Martin Jinye Zhang, Kangcheng Hou, Bogdan Paşaniuc et al. · 2021 · Research Square
  13. Intersectional mapping of multi-transmitter neurons and other cell types in the brain
    Xu, Jian, Jo, Andrew, DeVries, Raina P., Deniz, Sercan, Cherian, Suraj, Sunmola, Idris, Song, Xingqi, Marshall, John J., Gruner, Katherine A., Daigle, Tanya L. et al. · 2022 · Cell Reports
  14. The cell-type-specific spatial organization of the anterior thalamic nuclei of the mouse brain
    Margarita Kapustina, Angela A. Zhang, Jennifer Tsai, Brianna N. Bristow, Larissa Kraus, Kaitlin E. Sullivan, Sarah R. Erwin, Lihua Wang, Tara R. Stach, Jody Clements et al. · 2024 · Cell Reports
  15. Spreading depolarization triggers pro- and anti-inflammatory signalling: a potential link to headache
    Ζeynep Kaya, Nevin Belder, Melike Sever, Şefik Evren Erdener, Buket Dönmez‐Demir, Canan Bağcı, Merve Nur Köroğlu, Kaya Bilgüvar, Turgay Dalkara · 2025 · Brain
  16. Spatial Transcriptomics and Proteomics Profiling After Ischemic Stroke Reperfusion: Insights Into Vascular Alterations
    Line Mathilde Brostrup Hansen, Vibeke Secher Dam, Halvor Osterby Guldbrandsen, Christian Staehr, Tina Myhre Pedersen, Joanna Maria Kalucka, Hans Christian Beck, Dmitry D. Postnov, Lin Lin, Vladimir V. Matchkov · 2025 · Stroke
  17. Emergence of non-canonical parvalbumin-containing interneurons in hippocampus of a murine model of type I lissencephaly
    Tyler G. Ekins, Vivek Mahadevan, Yajun Zhang, James A. D’amour, Gülcan Akgül, Timothy J. Petros, Chris J. McBain · 2020 · eLife
  18. Revealing NOTCH-dependencies in synaptic targets associated with Alzheimer's disease
    Amalia Perna, Swananda V. Marathe, René Dreos, Laurent Falquet, Hatice Akarsu, L. Alberi Auber · 2021 · Molecular and Cellular Neuroscience
  19. Transcriptional regulation of neuronal identity
    Erick Sousa, Nuria Flames · 2021 · European Journal of Neuroscience
  20. The pathophysiological role of dihydroceramide desaturase in the nervous system
    Fei‐Yang Tzou, Thorsten Hornemann, Jui‐Yu Yeh, Shu‐Yi Huang · 2023 · Progress in Lipid Research
  21. A Cre-dependent massively parallel reporter assay allows for cell-type specific assessment of the functional effects of non-coding elements in vivo
    Tomás Lagunas, Stephen P. Plassmeyer, Anthony D. Fischer, Ryan Z. Friedman, Michael A. Rieger, Din Selmanovic, Simona Sarafinovska, Yvette K Sol, Michael J. Kasper, Stuart B. Fass et al. · 2023 · Communications Biology
  22. Spatiotemporal characterization of glial cell activation in an Alzheimer’s disease model by spatially resolved transcriptomics
    Hongyoon Choi, Eun Ji Lee, Jin Seop Shin, Hyun Kim, Sungwoo Bae, Yoori Choi, Dong Soo Lee · 2023 · Experimental & Molecular Medicine
  23. Hippocampo-cortical circuits for selective memory encoding, routing, and replay
    Ryan E. Harvey, Heath L. Robinson, Can Liu, Azahara Oliva, Antonio Fernández-Ruiz · 2022 · bioRxiv
  24. Single-cell m6A profiling in the mouse brain uncovers cell type-specific RNA methylomes and age-dependent differential methylation
    Matthew Tegowski, Anna K. Prater, Christopher L. Holley, Kate D. Meyer · 2024 · Nature Neuroscience
  25. A massively parallel reporter assay library to screen short synthetic promoters in mammalian cells
    Adam M. Zahm, William S. Owens, Samuel R. Himes, Braden S. Fallon, Kathleen E. Rondem, Alexa N. Gormick, Joshua S. Bloom, Sriram Kosuri, Henry Chan, Justin G. English · 2024 · Nature Communications
  26. Ultra-high-density Neuropixels probes improve detection and identification in neuronal recordings
    Zhiwen Ye, Andrew M. Shelton, Jordan R Shaker, Julien Boussard, Jennifer I. Colonell, Daniel Birman, Sahar Manavi, Susu Chen, Charlie Windolf, Cole Hurwitz et al. · 2025 · Neuron
  27. An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo
    Ya-Chien Chan, Eike Kienle, Martin Oti, Antonella Di Liddo, María Méndez-Lago, Dominik F. Aschauer, Manuel Peter, Michaela Pagani, Cosmas D. Arnold, Andreas Vonderheit et al. · 2023 · Scientific Reports
  28. Neonatal immune challenge poses a sex-specific risk for epigenetic microglial reprogramming and behavioral impairment
    Marius Schwabenland, Omar Mossad, Annika Sievert, Adam G. Peres, Elena Ringel, Sebastian Baasch, Julia Kolter, Giulia Cascone, Nikolaos Dokalis, Andreas Vlachos et al. · 2023 · Nature Communications
  29. A CRE/DRE dual recombinase transgenic mouse reveals synaptic zinc–mediated thalamocortical neuromodulation
    Stylianos Kouvaros, Brandon T. Bizup, Óscar Solís, Manoj Kumar, Emilya N. Ventriglia, Fallon P. Curry, Michael Michaelides, Thanos Tzounopoulos · 2023 · Science Advances
  30. Generation of human excitatory forebrain neurons by cooperative binding of proneural NGN2 and homeobox factor EMX1
    Cheen Euong Ang, Victor Hipolito Olmos, Kayla Vodehnal, Bo Zhou, Qian Yi Lee, Rahul Sinha, Aadit Narayanaswamy, Moritz Mall, Kirill Chesnov, Caia S. Dominicus et al. · 2024 · Proceedings of the National Academy of Sciences
  31. Epigenetic Mechanisms of Brain Sexual Differentiation
    Bruno Gegenhuber, Jessica Tollkühn · 2022 · Cold Spring Harbor Perspectives in Biology
  32. Sharp cell-type-identity changes differentiate the retrosplenial cortex from the neocortex
    Kaitlin E. Sullivan, Larissa Kraus, Margarita Kapustina, Lihua Wang, Tara R. Stach, Andrew L. Lemire, Jody Clements, Mark S. Cembrowski · 2023 · Cell Reports
  33. Transcriptomic atlas of midbrain dopamine neurons uncovers differential vulnerability in a Parkinsonism lesion model
    Behzad Yaghmaeian Salmani, Laura Lahti, Linda Gillberg, Jesper Kjaer Jacobsen, Ioannis Mantas, Per Svenningsson, Thomas Perlmann · 2023 · eLife
  34. Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration
    Victoria Cheung, Philip Chung, Max Bjorni, Varvara A. Shvareva, Yesenia C. Lopez, Evan H. Feinberg · 2021 · Cell Reports
  35. Id2 GABAergic interneurons comprise a neglected fourth major group of cortical inhibitory cells
    Robert P. Machold, Shlomo S. Dellal, Manuel Valero, Hector Zurita, Ilya Kruglikov, John Hongyu Meng, Jessica L. Hanson, Yoshiko Hashikawa, Benjamin Schuman, György Buzsáki et al. · 2023 · eLife
  36. Cell type-specific expression, regulation and compensation of CDKL5 activity in mouse brain
    Margaux Silvestre, Kelvin Dempster, Simeon R. Mihaylov, Suzanne Claxton, Sila K. Ultanir · 2024 · Molecular Psychiatry
  37. Cellular and Synaptic Diversity of Layer 2-3 Pyramidal Neurons in Human Individuals
    Henrike Planert, Franz Xaver Mittermaier, Sabine Grosser, Pawel Fidzinski, Ulf Christoph Schneider, Helena Radbruch, Julia Onken, Martin Holtkamp, Dietmar Schmitz, Henrik Alle et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  38. Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
    John K. Mich, Smrithi Sunil, Nelson Johansen, Refugio A. Martinez, Jiatai Liu, Bryan B. Gore, Joseph T. Mahoney, Mckaila Leytze, Yoav Ben‐Simon, Darren Bertagnolli et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  39. High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labeling
    Peibo Xu, Jian Peng, Tingli Yuan, Zhaoqin Chen, Hui He, Ziyan Wu, Ting Li, Xiaodong Li, Luyue Wang, Le Gao et al. · 2024 · eLife
  40. A molecular brain atlas reveals cellular shifts during the repair phase of stroke
    R. Weber, Beatriz Achón Buil, Nora H. Rentsch, Allison Bosworth, Mingzi Zhang, Kassandra Kisler, Christian Tackenberg, Ruslan Rust · 2025 · Journal of Neuroinflammation
  41. Characterization, isolation, and in vitro culture of leptomeningeal fibroblasts
    Ján Remšík, Fadi S. Saadeh, Xinran Tong, Minjun Li, Jenna Snyder, Tejus Bale, Jean G. Wu, Camille Derderian, David Guber, Yudan Chi et al. · 2021 · Journal of Neuroimmunology
  42. Developmental Patterning and Neurogenetic Gradients of Nurr1 Positive Neurons in the Rat Claustrum and Lateral Cortex
    Chao Fang, Hong Wang, Robert K. Naumann · 2021 · Frontiers in Neuroanatomy
  43. A matter of space and time: Emerging roles of disease-associated proteins in neural development
    Georgia Panagiotakos, Sergiu P. Pașca · 2021 · Neuron
  44. Loss of function of OTUD7A in the schizophrenia- associated 15q13.3 deletion impairs synapse development and function in human neurons
    Alena Kozlova, Siwei Zhang, Alex Kotlar, Brendan Jamison, Hanwen Zhang, Serena Qinyun Z. Shi, Marc P. Forrest, John McDaid, David J. Cutler, Michael P. Epstein et al. · 2022 · The American Journal of Human Genetics
  45. Single Nuclei Analyses Reveal Transcriptional Profiles and Marker Genes for Diverse Supraspinal Populations
    Zac Beine, Zimei Wang, Pantelis Tsoulfas, Murray G. Blackmore · 2022 · Journal of Neuroscience
  46. Adult neurogenesis in the primate hippocampus
    Ye Li, 中山大学中山眼科中心, 广东 广州 510060, 中国, Nana Xu, Zhao-Zhe Hao, Sheng Liu, 广东省脑功能与疾病重点实验室, 广东 广州 510080, 中国 · 2023 · 动物学研究
  47. Comparative transcriptomics reveals human-specific cortical features
    Nikolas L. Jorstad, Janet H. T. Song, David Exposito-Alonso et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  48. Compensation between FOXP transcription factors maintains proper striatal function
    Newaz I. Ahmed, Nitin Khandelwal, Ashley G. Anderson, Emily Oh, Rachael M. Vollmer, Ashwinikumar Kulkarni, Jay R. Gibson, Geneviève Konopka · 2024 · Cell Reports
  49. Advancements in Single-Cell RNA Sequencing and Spatial Transcriptomics for Central Nervous System Disease
    Yuan Zhang, Teng Li, Guangtian Wang, Yabin Ma · 2024 · Cellular and Molecular Neurobiology
  50. Connectomics of predicted Sst transcriptomic types in mouse visual cortex
    Clare Ruth Gamlin, Casey M Schneider-Mizell, Matthew Mallory, Leila Elabbady, Nathan W. Gouwens, Grace Williams, Alice Mukora, Rachel A. Dalley, Ágnes L. Bodor, Derrick Brittain et al. · 2025 · Nature
  51. A transcriptomic atlas of astrocyte heterogeneity across space and time in mouse and marmoset
    Margaret E. Schroeder, Dana M. McCormack, Lukas R. Metzner, Jinyoung Kang, Katelyn X. Li, Eunah Yu, Lisa Melamed, Kirsten M. Levandowski, Heather Zaniewski, Qiangge Zhang et al. · 2025 · Neuron
  52. Juxtacellular opto-tagging of hippocampal CA1 neurons in freely moving mice
    Lingjun Ding, Giuseppe Balsamo, Hongbiao Chen, Eduardo Blanco-Hernández, Ioannis S. Zouridis, Robert K. Naumann, Patricia Preston‐Ferrer, Andrea Burgalossi · 2022 · eLife
  53. Parallel processing by distinct classes of principal neurons in the olfactory cortex
    Shivathmihai Nagappan, Kevin M. Franks · 2021 · eLife
  54. Cell composition inference and identification of layer-specific spatial transcriptional profiles with POLARIS
    Jiawen Chen, Tianyou Luo, Min-Zhi Jiang, Jiandong Liu, Gaorav P. Gupta, Yun Li · 2023 · Science Advances
  55. Seeing the Forest and Its Trees Together: Implementing 3D Light Microscopy Pipelines for Cell Type Mapping in the Mouse Brain
    Kyra T. Newmaster, Fae N. Kronman, Yuan-Ting Wu, Yongsoo Kim · 2022 · Frontiers in Neuroanatomy
  56. A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
    Yoav Ben‐Simon, Marcus J. Hooper, Sujatha Narayan et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  57. txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility
    Hao Zhang, Ryan M. Mulqueen, Natalie Iannuzo, Dominique O Farrera, Francesca Polverino, James J. Galligan, Julie G. Ledford, Andrew Adey, Darren A. Cusanovich · 2024 · Genome biology
  58. Protective effect of PDE4B subtype-specific inhibition in an App knock-in mouse model for Alzheimer’s disease
    Paul Armstrong, Hüseyin Güngör, Pariya Anongjanya, Clare Tweedy, Edward T. Parkin, Jamie Johnston, Ian Carr, Neil Dawson, Steven J. Clapcote · 2024 · Neuropsychopharmacology
  59. Organization of corticocortical and thalamocortical top-down inputs in the primary visual cortex
    Yanmei Liu, Jiahe Zhang, Zhishan Jiang, Meiling Qin, Min Xu, Siyu Zhang, Guofen Ma · 2024 · Nature Communications
  60. Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons
    Anna Zhuravskaya, Karen Yap, Fursham Hamid, Eugene V. Makeyev · 2024 · Genome biology
  61. Distinct septo-hippocampal cholinergic projections separately mediate stress-induced emotional and cognitive deficits
    WU Jian-lin, Zi-Ming Li, Hao Hui Chen, Wenjun Chen, Neng-Yuan Hu, Shi-Yang Jin, Xiaowen Li, Yihua Chen, Jian‐Ming Yang, Tianming Gao · 2024 · Science Advances
  62. Cooperative actions of interneuron families support the hippocampal spatial code
    Manuel Valero, Pablo Abad-Perez, Andrea Gallardo, Marta Picco, Raquel García-Hernandez, Jorge R. Brotons‐Mas, Anel Martínez-Félix, Robert P. Machold, Bernardo Rudy, György Buzsáki · 2025 · Science
  63. Transcriptomic and spatial organization of telencephalic GABAergic neurons
    Cindy T. J. van Velthoven, Yuan Gao, Michael Kunst, Changkyu Lee, Delissa McMillen, Anish Bhaswanth Chakka, Tamara Casper, Michael Clark, Rushil Chakrabarty, Scott F. Daniel et al. · 2025 · Nature
  64. Functional and structural features of L2/3 pyramidal cells continuously covary with pial depth in mouse visual cortex
    Simon Weiler, Drago Guggiana-Nilo, Tobias Bonhoeffer, Mark Hübener, Tobias Rose, Volker Scheuß · 2022 · Cerebral Cortex
  65. Chrna5 and Lynx Prototoxins Identify Acetylcholine Super-Responder Subplate Neurons
    Sridevi Venkatesan, Tianhui Chen, Yupeng Liu, Eric E. Turner, Shreejoy J. Tripathy, Evelyn K. Lambe · 2022 · iScience
  66. Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
    Fangming Xie, Ethan J. Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M. Margarita Behrens, Yang Eric Li, Jacinta D. Lucero, Chongyuan Luo, Joseph R. Nery et al. · 2023 · Cell Genomics
  67. An Atlas of Cortical Arealization Identifies Dynamic Molecular Signatures
    Aparna Bhaduri, Carmen Sandoval-Espinosa, Marcos Otero‐García · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  68. Single-cell anatomical analysis of human hippocampus and entorhinal cortex uncovers early-stage molecular pathology in Alzheimer’s disease
    José Dávila-Velderrain, Hansruedi Mathys, Shahin Mohammadi, Brad Ruzicka, Xueqiao Jiang, Ayesha P. Ng, David Alan Bennett, Li‐Huei Tsai, M Kellis · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  69. Signature morpho-electric properties of diverse GABAergic interneurons in the human neocortex
    Brian Lee, Rachel A. Dalley, Jeremy A. Miller et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  70. Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain
    Hanqing Liu, Qiurui Zeng, Jingtian Zhou et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  71. The molecular diversity of hippocampal regions and strata at synaptic resolution revealed by integrated transcriptomic and proteomic profiling
    Kaulich, Eva, Waselenchuk, Quinn, Fürst, Nicole, Desch, Kristina, Mosbacher, Janus, Ciirdaeva, Elena, Juengling, Marcel, Tushev, Georgi, Langer, Julian, Schuman, Erin M. · 2024
  72. Neocortical somatostatin neuron diversity in cognition and learning
    Eunsol Park, Matthew B. Mosso, Alison L. Barth · 2025 · Trends in Neurosciences
  73. AI-driven framework to map the brain metabolome in three dimensions
    Xin Ma, Cameron J. Shedlock, Terrymar Medina, Roberto A. Ribas, Harrison A. Clarke, Tara R. Hawkinson, Praveen K. Dande, Hari K R Golamari, Lei Wu, Borhane Ziani et al. · 2025 · Nature Metabolism
  74. singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality
    David F. Stein, Huidong Chen, Michael E. Vinyard, Qian Qin, Rebecca D. Combs, Qian Zhang, Luca Pinello · 2021 · Frontiers in Genetics
  75. A single-nucleus transcriptomic atlas of the dog hippocampus reveals the potential relationship between specific cell types and domestication
    Qi-Jun Zhou, Xingyan Liu, Longlong Zhang, Rong Wang, Tingting Yin, Xiaolu Li, Guimei Li, Yuqi He, Zhaoli Ding, Pengcheng Ma et al. · 2022 · National Science Review
  76. Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex
    Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H. Siegle, Daniel J. Denman, Soo Yeun Lee, Anatoly Buchin, Werner A. H. Van Geit, Clayton P. Mosher, Shawn R. Olsen et al. · 2023 · Nature Communications
  77. Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
    Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Heather A. Sullivan, Na Sun, M Kellis, Bosiljka Tasic, Bosiljka Tasic et al. · 2023 · eLife
  78. An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes
    2024
  79. Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system
    Igor I. Adameyko, Trygve E. Bakken, Aparna Bhaduri, Chintan Chhatbar, Mariella G. Filbin, David Gate, Hannah Hochgerner, Chang N. Kim, Jordan Edward Krull, Gioele La Manno et al. · 2024 · Nature Neuroscience
  80. Transcriptome size matters for single-cell RNA-seq normalization and bulk deconvolution
    Songjian Lu, Jiyuan Yang, Lei Yan, Jingjing Liu, Judy Jiaru Wang, Rhea Jain, Jiyang Yu · 2025 · Nature Communications
  81. “Reframing” dopamine signaling at the intersection of glial networks in the aged Parkinsonian brain as innate Nrf2/Wnt driver: Therapeutical implications
    Bianca Marchetti, Carmela Giachino, Cataldo Tirolo, Maria Francesca Serapide · 2022 · Aging Cell
  82. ANKS1B encoded AIDA-1 regulates social behaviors by controlling oligodendrocyte function
    Chang Hoon Cho, Ilana V. Deyneko, Dylann Cordova-Martinez, Juan Vazquez, Anne S. Maguire, Jenny R. Diaz, Abigail U. Carbonell, Jaafar O. Tindi, Min‐Hui Cui, Roman Fleysher et al. · 2023 · Nature Communications
  83. Molecular programs guiding arealization of descending cortical pathways
    Philipp Abe, Adrien Lavalley, Ilaria Morassut, António J. Santinha, Sergi Roig‐Puiggros, Awais Javed, Esther Klingler, Natalia Baumann, Julien Prados, Randall J. Platt et al. · 2024 · Nature
  84. Mechanisms of Development
    Hans J. ten Donkelaar, Bernd Fritzsch · 2023 · Springer eBooks
  85. Global Spatial Transcriptome of Macaque Brain at Single-Cell Resolution
    Ao Chen, Yidi Sun, Ying Lei et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  86. Whole-cortex in situ sequencing reveals peripheral input-dependent cell type-defined area identity
    Xiaoyin Chen, Stephan Fischer, Mara C.P. Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O. Kanold, Jesse A Gillis, Anthony M. Zador · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  87. Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer’s Disease
    Emily Miyoshi, S. Morabito, Caden M. Henningfield et al. · 2023 · bioRxiv
  88. Multimodal classification of neurons in the lateral septum
    Christopher M. Reid, Yuqi Ren, Rhiana Simon, Yajun Xie, Miguel Turrero Garcίa, Diana Tran, Steve Vu, Jonathan Liu, Manal A. Adam, Sarah M. Hanson et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  89. Neuronal diversity and stereotypy at multiple scales through whole brain morphometry
    Yufeng Liu, Shengdian Jiang, Yingxin Li, Sujun Zhao, Zhixi Yun, Zuo-Han Zhao, Lingli Zhang, Gaoyu Wang, Xin Chen, Linus Manubens-Gil et al. · 2024 · Nature Communications
  90. An integrated transcriptomic and proteomic map of the mouse hippocampus at synaptic resolution
    Eva Kaulich, Quinn Waselenchuk, Nicole Fürst, Kristina Desch, Janus Mosbacher, Elena Ciirdaeva, Marcel Juengling, Roshni Ray, Belquis Nassim-Assir, Georgi Tushev et al. · 2025 · Nature Communications
  91. Cortical interneuron specification and diversification in the era of big data
    Nicoletta Kessaris, Myrto Denaxa · 2023 · Current Opinion in Neurobiology
  92. The progenitor basis of cortical projection neuron diversity
    Dhananjay Huilgol, Jeffrey B. Russ, Sweta Srivas, Z. Josh Huang · 2023 · Current Opinion in Neurobiology
  93. Anatomical and molecular characterization of parvalbumin-cholecystokinin co-expressing inhibitory interneurons: implications for neuropsychiatric conditions
    Steven F. Grieco, Kevin G. Johnston, Pan Gao, B. Maximiliano Garduño, Bryan Tang, Elsie Yi, Yanjun Sun, Gregory D. Horwitz, Zhaoxia Yu, Todd C. Holmes et al. · 2023 · Molecular Psychiatry
  94. Synaptic zinc potentiates AMPA receptor function in mouse auditory cortex
    Philip T R Bender, Mason McCollum, Helen Boyd-Pratt, Benjamin Z. Mendelson, Charles T. Anderson · 2023 · Cell Reports
  95. Protective effects of apigenin on the brain transcriptome with aging
    Alyssa N. Cavalier, Zachary Stephen Clayton, Devin Wahl, David A. Hutton, Cali M. McEntee, Douglas R. Seals, Thomas J. LaRocca · 2023 · Mechanisms of Ageing and Development
  96. Impaired synaptic plasticity and decreased excitability of hippocampal glutamatergic neurons mediated by BDNF downregulation contribute to cognitive dysfunction in mice induced by repeated neonatal exposure to ketamine
    Jie Wan, Lin‐Hui Ma, Xinhao Jiao, Wei Dong, Jia-Tao Lin, Yongkang Qiu, Wei-Feng Wu, Qiang Liu, Chen Chen, He Huang et al. · 2024 · CNS Neuroscience & Therapeutics
  97. Haploinsufficiency underlies the neurodevelopmental consequences of SLC6A1 variants
    Dina Buitrago Silva, Marena I. Trinidad, Alicia Ljungdahl, Jezrael L. Revalde, Geoffrey Y. Berguig, William Wallace, Cory S. Patrick, Lorenzo Bomba, Michelle R. Arkin, Shan Dong et al. · 2024 · The American Journal of Human Genetics
  98. DOT: a flexible multi-objective optimization framework for transferring features across single-cell and spatial omics
    Arezou Rahimi, Luís A. Vale-Silva, Maria Fälth Savitski, Jovan Tanevski, Julio Sáez-Rodríguez · 2024 · Nature Communications
  99. Glial modulation of synapse development and plasticity: oligodendrocyte precursor cells as a new player in the synaptic quintet
    Yetunde O. Akinlaja, Akiko Nishiyama · 2024 · Frontiers in Cell and Developmental Biology
  100. scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases
    Hongru Hu, Gerald Quon · 2024 · Nature Communications