A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Yao, Zizhen, van Velthoven, Cindy T.J., Nguyen, Thuc Nghi, Goldy, Jeff, Sedeno-Cortes, Adriana E., Baftizadeh, Fahimeh, Bertagnolli, Darren, Casper, Tamara, Chiang, Megan, Crichton, Kirsten, Ding, Song-Lin, Fong, Olivia, Garren, Emma, Glandon, Alexandra, Gouwens, Nathan W., Gray, James, Graybuck, Lucas T., Hawrylycz, Michael J., Hirschstein, Daniel, Kroll, Matthew, Lathia, Kanan, Lee, Changkyu, Levi, Boaz, McMillen, Delissa, Mok, Stephanie, Pham, Thanh, Ren, Qingzhong, Rimorin, Christine, Shapovalova, Nadiya, Sulc, Josef, Sunkin, Susan M., Tieu, Michael, Torkelson, Amy, Tung, Herman, Ward, Katelyn, Dee, Nick, Smith, Kimberly A., Tasic, Bosiljka, Zeng, Hongkui·2021·Cell
DOI 10.1016/j.cell.2021.04.021

Cited by (998)

Items 501–600 of 998

  1. Spatially resolved mapping of cells associated with human complex traits
    Liyang Song, Wenhao Chen, Junren Hou, Minmin Guo, Jian Yang · 2024 · medRxiv
  2. Histone bivalency in CNS development
    Kärt Mätlik, Eve‐Ellen Govek, Mary E. Hatten · 2025 · Genes & Development
  3. starTracer is an accelerated approach for precise marker gene identification in single-cell RNA-Seq analysis
    Feiyang Zhang, Kaixin Huang, Ruixi Chen, Zechen Liu, Qiongyi Zhao, Shengqun Hou, Wenhao Ma, Yanze Li, Yan Peng, Jincao Chen et al. · 2024 · Communications Biology
  4. SFRP1 upregulation causes hippocampal synaptic dysfunction and memory impairment
    Guadalupe Pereyra, María Inés Mateo, Pablo Miaja, María Jesús Martín‐Bermejo, Marcos Martinez-Baños, Remco V. Klaassen, Agnès Gruart, Javier Rueda‐Carrasco, Alba Fernández‐Rodrigo, Esperanza López-Merino et al. · 2025 · Cell Reports
  5. Molecular states underlying neuronal cell type development and plasticity in the postnatal whisker cortex
    Salwan Butrus, Hannah R. Monday, Christopher J. Yoo, Daniel E. Feldman, Karthik Shekhar · 2025 · PLoS Biology
  6. Ppp2r1a haploinsufficiency increases excitatory synaptic transmission and decreases spatial learning by impairing endocannabinoid signaling
    Yirong Wang, Weicheng Duan, Hua Li, Zhiwei Tang, Ruyi Cai, Shangxuan Cai, Guanghao Deng, Liangpei Chen, Hongyan Luo, Liping Chen et al. · 2025 · Journal of Clinical Investigation
  7. Mimicking opioid analgesia in cortical pain circuits
    Corinna S. Oswell, Sophie A. Rogers, Justin G. James, Nora M. McCall, Alex I. Hsu, Gregory J. Salimando, Malaika Mahmood, Lisa M. Wooldridge, Meghan Wachira, Adrienne Y. Jo et al. · 2026 · Nature
  8. The evolution of gene regulation in mammalian cerebellum development
    Ioannis Sarropoulos, Mari Sepp, Tetsuya Yamada, Philipp S. L. Schäfer, Nils Trost, Julia Schmidt, Céline Schneider, Charis Drummer, Sophie Mißbach, Ibrahim Ihsan Taskiran et al. · 2026 · Science
  9. Molecular signatures of resilience to Alzheimer’s disease in neocortical layer 4 neurons
    S. Akila Parvathy Dharshini, Jorge Sanz‐Ros, Jie Pan, Weijing Tang, Kristen Vallejo, Yu Chen Liu, Marcos Otero‐García, Inma Cobos · 2026 · Nature Communications
  10. Decoding hereditary spastic paraplegia pathogenicity through transcriptomic profiling
    Nicolas James Ho, Xiao Chen, Yong Lei, Shen Gu, China Orthopedic Regenerative Medicine Group (CORMed), Hangzhou, Zhejiang, 310058 China · 2023 · 动物学研究
  11. Single-Nucleus Profiling Identifies Accelerated Oligodendrocyte Precursor Cell Senescence in a Mouse Model of Down Syndrome
    Bianca Rusu, Bharti Kukreja, Taiyi Wu, Sophie J. Dan, Min Yi Feng, Brian Thomas Kalish · 2023 · eNeuro
  12. Synaptic cell-adhesion molecule latrophilin-2 is differentially directed to dendritic domains of hippocampal neurons
    Thomas R. Murphy, Ryan F Amidon, Jordan D. Donohue, Libo Li, Garret R. Anderson · 2024 · iScience
  13. Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
    Kaitlin M. Stouffer, A. Trouvé, Laurent Younes B, Michael Kunst, Lydia Ng, Hongkui Zeng, Manjari M-G Anant, Jean Fan, Yongsoo Kim, Xiaoyin Chen et al. · 2024 · Nature Communications
  14. Complementation testing identifies genes mediating effects at quantitative trait loci underlying fear-related behavior
    Patrick B. Chen, Rachel X. Chen, Nathan LaPierre, Zeyuan Chen, Joel Mefford, Emilie Marcus, Matthew G. Heffel, Daniela C. Soto, Jason Ernst, Chongyuan Luo et al. · 2024 · Cell Genomics
  15. Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction
    Hailee Walker, Nicholas Alonzo Frost · 2024 · STAR Protocols
  16. Searching for the cellular underpinnings of the selective vulnerability to tauopathic insults in Alzheimer’s disease
    Justin Torok, Pedro D. Maia, Chaitali Anand, Ashish Raj · 2025 · Communications Biology
  17. Probing subicular inputs to the medial prefrontal cortex
    Sanne Beerens, Rozan Vroman, Jack F. Webster, Christian Wozny · 2021 · iScience
  18. Cortical Cartography: Mapping Arealization Using Single-Cell Omics Technology
    Patricia R. Nano, Claudia V. Nguyen, Jessenya Mil, Aparna Bhaduri · 2021 · Frontiers in Neural Circuits
  19. Corticogenesis across species at single‐cell resolution
    Seon Hye E. Park, Ana K. Ortiz, Geneviève Konopka · 2022 · Developmental Neurobiology
  20. A novel chromatin-remodeling complex variant, dcPBAF, is involved in maintaining transcription in differentiated neurons
    Nataliya V. Soshnikova, Asya M. Azieva, Natalia S. Klimenko · 2023 · Frontiers in Cell and Developmental Biology
  21. Meta-analytic markers reveal a generalizable description of cortical cell types
    Stephan Fischer, J. Gillis · 2021 · bioRxiv
  22. Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in an Alzheimer’s disease model
    H. Zeng, Jia-Hao Huang, Hao-Wen Zhou, William J. Meilandt, Borislav Dejanovic, Yi-Ming Zhou, C. J. Bohlen, Seung-Hye Lee, Jing-Yi Ren, Albert Y. Liu et al. · 2022 · bioRxiv
  23. Coordinated control of neuronal differentiation and wiring by a sustained code of transcription factors
    Mehmet Neset Özel, Claudia Skok Gibbs, Isabel Holguera, Mennah Soliman, Richard Bonneau, Claude Desplan · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  24. The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
    Michael Hawrylycz, Maryann Elizabeth Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli, Jan Gunnar Bjaalie, Hong‐Wei Dong, Satrajit Ghosh, Jesse A Gillis et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  25. A transposase-derived gene required for human brain development
    Luz Jubierre, Sara A. Lewis, Rodrigo Lopez Gutierrez et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Spatial transcriptomics reveals molecular dysfunction associated with Lewy pathology
    Thomas M. Goralski, Lindsay K. Meyerdirk, Libby Breton et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  27. Cadherins orchestrate specific patterns of perisomatic inhibition onto distinct pyramidal cell populations
    Julie Jézéquel, Giuseppe Condomitti, Tim Kroon · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  28. Spatially resolved molecular and cellular atlas of the mouse brain
    Lei Han, Zhen Liu, Zehua Jing, Yuxuan Liu, Huizhong Chang, Junjie Lei, Yujie Peng, Kexin Wang, Yuanfang Xu, Wei Liu et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  29. The transcriptomic and spatial organization of telencephalic GABAergic neuronal types
    Cindy T. J. van Velthoven, Yuan Gao, Michael Kunst, Changkyu Lee, Delissa McMillen, Anish Bhaswanth Chakka, Tamara Casper, Michael Clark, Rushil Chakrabarty, Scott F. Daniel et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  30. Astrocyte Regional Specialization is Shaped by Postnatal Development
    Margaret E. Schroeder, Dana M. McCormack, Lukas R. Metzner, Jinyoung Kang, Katelyn X. Li, Eunah Yu, Lisa Melamed, Kirsten M. Levandowski, Heather Zaniewski, Qiangge Zhang et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  31. Self-Organizing Neural Networks in Organoids Reveal Principles of Forebrain Circuit Assembly
    Sebastian Hernandez, Hunter E. Schweiger, Isabel Cline et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  32. A Developmental Atlas of the Drosophila Nerve Cord Uncovers a Global Temporal Code for Neuronal Identity
    Sebastian Cachero, Myrto Mitletton, Isabella R. Beckett, Elizabeth C. Marin, Laia Serratosa Capdevila, Marina Gkantia, Jelly HM Soffers, Haluk Lacin, Gregory S.X.E. Jefferis, Erika Doná · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  33. Neuronal cell populations in circumoral nerve ring of sea cucumber Apostichopus japonicus: Ultrastructure and transcriptional profile
    Yingqiu Zheng, Xiao Cong, Huachen Liu, Kenneth B. Storey, Muyan Chen · 2024 · Comparative Biochemistry and Physiology Part D Genomics and Proteomics
  34. Multidimensional Effects of Stress on Neuronal Exosome Levels and Simultaneous Transcriptomic Profiles
    Hope G. Kronman, Amarjyot Singh, Shofiul Azam, Andrea Susana Guzman, Danielle Zelli, Timothy Lau, Josh Dobbin, Benedetta Bigio, Carla Nasca · 2024 · Biological Psychiatry Global Open Science
  35. Transcriptome signatures of the medial prefrontal cortex underlying GABAergic control of resilience to chronic stress exposure
    Meiyu Shao, Julia Botvinov, Deepro Banerjee, Santhosh Girirajan, Bernhard Lüscher · 2024 · Molecular Psychiatry
  36. GPR40 inhibits microglia-mediated neuroinflammation via the NLRP3/IL-1β/glutaminase pathway after subarachnoid hemorrhage.
    Yan Zou, Bing'tao Zhang, Kun Jiang, Xiao'ming Zhou, Qi-Kai Tang, Shu-Juan Chen, Qi Wu, Xudong Zhao, Xin Zhang · 2025 · Biochemical Pharmacology
  37. CXCL12 Engages Cortical Inhibitory Neurons to Enhance Dendritic Spine Plasticity and Structured Network Activity
    Chunta Ho, Jared Luchetta, Bradley Nash, Lindsay K. Festa, James A. Johnson, Ahmet Saçan, Joshua G. Jackson, Antonio Sanz-Clemente, Renato Brandimarti, Olimpia Meucci · 2025 · Journal of Neuroscience
  38. A consensus definition for deep layer 6 excitatory neurons in mouse somatosensory, visual, and motor cortex
    Su-Jeong Kim, Travis A. Babola, Kiwoong Lee, Alina C. Spiegel, Kihwan Lee, Chanel J. Matney, Michael H. Liew, Eva M. Schulteis, Austin E. Coye, Mikhail Proskurin et al. · 2025 · Cell Reports
  39. Cell-extrinsic controls over neocortical neuron fate and diversity
    Natalia Baumann, Ilaria Morassut, Sergi Roig‐Puiggros, Esther Klingler, Giorgia Bartolini, Sabine Fièvre, Denis Jabaudon · 2025 · Science Advances
  40. Integrative analysis of single-neuron projectomes links connectome, transcriptome, and function in the mouse cortex
    Le Gao, Haifang Wang, Yu Chen, Zhaoqin Chen, Li Deng, Dechen Liu, Xiaojing Ding, Ziwei Le, Yuan Liu, Yun Du et al. · 2025 · Neuron
  41. Perimenopausal state oestradiol to progesterone imbalance drives Alzheimer’s risk via ERRα dysregulation and energy dyshomeostasis
    Jacquelyne Ka‐Li Sun, Amy Zexuan Peng, Ronald P. Hart, Karl Herrup, Deng Wu, Genper Chi‐Ngai Wong, Hei‐Man Chow · 2025 · Nature Communications
  42. Locus coeruleus norepinephrine neurons facilitate orbitofrontal cortex remapping and behavioral flexibility
    M. Cameron Ogg, Benjamin Lansdell, Hunter T. Franks, Alex C. Hughes, Jimin Lee, Hunter G. Nolen, Abbas Shirinifard, Lindsay A. Schwarz · 2025 · Cell Reports
  43. DNA damage burden causes selective CUX2 neuron loss in neuroinflammation
    Laura R. Morcom, Wenlong Xia, Zhaoyang Xu, Yashika Awasthi, Celine Geywitz, Matthew O Ellis, Tomas Noli, Amel Zulji, Daniel Yamamoto, Gemma C. Girdler et al. · 2026 · Nature
  44. Fronto-insular circuit mechanisms of accelerated intermittent theta burst stimulation
    Shane B. Johnson, Devin Rocks, Laura Chalençon, Kenneth Johnson, Umair Hassan, Anisul Arefin, Gülcan Akgül, Alexander Donatelle, Henry Asher, Immanuel Elbau et al. · 2026 · Cell
  45. Cortical development dynamics across autism spectrum disorder mouse models
    Lena A. Schwarz, Christoph P. Dotter, Sergey V. Isaev, Michela Lisi, Daniel Malzl, Christoph Bueschl, Sabrina Ladstätter, Bárbara Oliveira, Matteo Barel, Bernadette Basilico et al. · 2026 · Nature
  46. Experience alters hippocampal and cortical network communication via a KIBRA-dependent mechanism
    Lilyana D. Quigley, Robert Pendry, Matthew L. Mendoza, Brad E. Pfeiffer, Lenora J. Volk · 2023 · Cell Reports
  47. Dynamic Organization of Neuronal Extracellular Matrix Revealed by HaloTag-HAPLN1
    Igal Sterin, Ava Niazi, Jennifer S. Kim, Joosang Park, Sungjin Park · 2024 · Journal of Neuroscience
  48. Sainsc: A Computational Tool for Segmentation‐Free Analysis of In Situ Capture Data
    Niklas Müller‐Bötticher, Sebastian Tiesmeyer, Roland Eils, Naveed Ishaque · 2024 · Small Methods
  49. Histamine-tuned subicular circuit mediates alert-driven accelerated locomotion in mice
    Lin Cheng Yang, Mengdi Zhang, Yuan Zhou, Dongxiao Jiang, Lan Yu, Lingyu Xu, Fan Fei, Wenkai Lin, Yanrong Zheng, Jiannong Wu et al. · 2024 · Nature Communications
  50. Growth hormone secretagogue receptor and cannabinoid receptor type 1 intersection in the mouse brain
    Camila Saenz, Gimena Fernández, Ramiro Esteban Llovera, María José Tolosa, Sonia Cantel, Jean‐Alain Fehrentz, Ken Mackie, Lorenzo Leggio, Jeffrey Marc Zigman, Pablo Nicolás De Francesco et al. · 2024 · Brain Structure and Function
  51. SEE: A Method for Predicting the Dynamics of Chromatin Conformation Based on Single‐Cell Gene Expression
    Minghong Li, Yurong Yang, Rongfeng Wu, Haiyan Gong, Zan Yuan, Jixin Wang, Erping Long, Xiaotong Zhang, Yang Chen · 2025 · Advanced Science
  52. Large-scale effects of prenatal inflammation and early life circadian disruption in mice: Implications for neurodevelopmental disorders
    Tara C. Delorme, Danusa Mar Arcego, Danae Penichet, Nicholas O’Toole, Nikki Huebener, Patrícia Pelufo Silveira, Lalit K. Srivastava, Nicolas Cermakian · 2025 · Brain Behavior and Immunity
  53. Genomic evolution reshapes cell-type diversification in the amniote brain
    Duoyuan Chen, Zhenkun Zhuang, Maolin Huang, Yunqi Huang, Yuting Yan, Yanru Zhang, Youning Lin, Xiaoying Jin, Yuanmei Wang, Jinfeng Huang et al. · 2025 · Developmental Cell
  54. Analysis of changes in intercellular communications in Alzheimer’s disease reveals conserved changes in glutamatergic transmission in mice and humans
    Katrina Bartas, Megan H. Nguyen, Wei Zhao, May Hui, Qing Nie, Kevin T. Beier · 2025 · Scientific Reports
  55. Single Cell Transcriptomic and Chromatin Profiles Suggest Layer Vb Is the Only Layer With Shared Excitatory Cell Types in the Medial and Lateral Entorhinal Cortex
    Stefan Blankvoort, Lene Christin Olsen, Clifford G. Kentros · 2022 · Frontiers in Neural Circuits
  56. Effects of Septin-14 Gene Deletion on Adult Cognitive/Emotional Behavior
    Kuan-Ru Chen, Hanyu Wang, Yi‐Han Liao · 2022 · Frontiers in Molecular Neuroscience
  57. Application of a pharmacological transcriptome filter identifies a shortlist of mouse glucocorticoid receptor target genes associated with memory consolidation
    Jacobus C. Buurstede, Eduardo Henrique de Lima Umeoka, Marcia Santos da Silva, Harm J. Krugers, Marian Joëls, Onno Cornelis Meijer · 2022 · Neuropharmacology
  58. Investigating microglia-neuron crosstalk by characterizing microglial contamination in human and mouse patch-seq datasets
    Keon Arbabi, Yiyue Jiang, Derek Howard, Anukrati Nigam, Wataru Inoue, Guillermo González‐Burgos, Daniel Felsky, Shreejoy J. Tripathy · 2023 · iScience
  59. Mapping alterations in the local synchrony of the cerebral cortex in schizophrenia
    Jesús Pujol, Núria Pujol, Anna Mané, Gerard Martínez‐Vilavella, Joan Deus, Víctor Pérez, Laura Blanco‐Hinojo · 2023 · European Psychiatry
  60. CellGO: a novel deep learning-based framework and webserver for cell-type-specific gene function interpretation
    Peilong Li, Junfeng Wei, Ying Zhu · 2023 · Briefings in Bioinformatics
  61. Complexin-1 enhances ultrasound neurotransmission in the mammalian auditory pathway
    Meiling Liu, Changliang Wang, Lifang Huo, Jie Cao, Xiuguang Mao, Ziqing He, Chuanxia Hu, Hai‐Jian Sun, Wenjun Deng, Weiya He et al. · 2024 · Nature Genetics
  62. Visualizing scRNA-Seq data at population scale with GloScope
    Hao Wang, William Torous, Boying Gong, Elizabeth A. Purdom · 2024 · Genome biology
  63. NMDAR-mediated transcriptional control of gene expression during the development of medial ganglionic eminence-derived interneurons
    Vivek Mahadevan, Apratim Mitra, Yajun Zhang, Xiaoqing Q Yuan, Areg Peltekian, Ramesh Chittajallu, Caroline Esnault, Dragan Maric, Christopher T. Rhodes, Kenneth A. Pelkey et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  64. Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex
    Dhananjay Huilgol, Jesse Maurica Levine, William Galbavy · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  65. A lack of distinct cell identities in single-cell measurements: revisiting Waddington’s landscape
    Breanne Sparta, Timothy Hamilton, Juan V. Najar, Serena Hughes, Gunalan Natesan, Eric J. Deeds · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  66. Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat
    2023
  67. Analysis of multi-condition single-cell data with latent embedding multivariate regression
    Constantin Ahlmann-Eltze, Wolfgang K. Huber · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  68. TISSUE: uncertainty-calibrated prediction of single-cell spatial transcriptomics improves downstream analyses
    Eric Sun, Rong Ma, Paloma Navarro Negredo · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  69. Neuronal Connectivity as a Determinant of Cell Types and Subtypes
    Lijuan Liu, Zhi-Xi Yun, L. Manubens-Gil, Han-Bo Chen, Feng Xiong, Hong-Wei Dong, Hong-Kui Zeng, M. Hawrylycz, G. Ascoli, Hanchuan Peng · 2023 · bioRxiv
  70. Comparative neuroimaging of sex differences in human and mouse brain anatomy
    Elisa Guma, Antoine Beauchamp, Siyuan Liu, E. Levitis, J. Ellegood, Linh Pham, R. Mars, A. Raznahan, J. Lerch · 2023 · bioRxiv
  71. Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types
    J. Russell Moore, Mati T. Nemera, Rinaldo D. D’Souza, Nicole Hamagami, Adam W. Clemens, Diana C. Beard, Alaina Urman, Victoria Rodriguez Mendoza, Harrison W. Gabel · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  72. Nanoligomers targeting NF-κB and NLRP3 reduce neuroinflammation and improve cognitive function with aging and tauopathy
    Devin Wahl, Sydney J. Risen, Shelby C. Osburn · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  73. Developmental origins and evolution of pallial cell types and structures in birds
    Bastienne Zaremba, Amir Fallahshahroudi, Céline Schneider et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  74. Goal-directed motor actions drive acetylcholine dynamics in sensory cortex
    Jing Zou, Jan Willem de Gee, Zakir Mridha, Simon Trinh, Andrew Erskine, Miao Jing, Jennifer Z. Yao, Stefanie Walker, Yulong Li, Matthew J. McGinley et al. · 2024 · eLife
  75. Pyramidal neurons proportionately alter the identity and survival of specific cortical interneuron subtypes
    Gordon Fishell, S. Wu, Min Dai et al. · 2024 · Research Square
  76. SRRM2 haploinsufficiency drives SynGAP-γ reduction, AGAP3 mis-splicing, and oligodendrocyte deficits in a mouse model of schizophrenia
    Sameer Aryal, Chuhan Geng, Margaret A. Yin, Min Jee Kwon, Zohreh Farsi, Nathaniel Goble, Ahmet S. Asan, Kira S. Brenner, Nate Shepard, Ana Geller et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  77. WWC2 modulates GABAA-receptor-mediated synaptic transmission, revealing class-specific mechanisms of synapse regulation by WWC family proteins
    Thomas Dunham, Julia R. Wilkerson, Richard C. Johnson, Richard L. Huganir, Lenora J. Volk · 2024 · Cell Reports
  78. Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex
    Caroline A. McLachlan, David G. Lee, O‐Sung Kwon, Kevin M. Delgado, Nikita Manjrekar, Zizhen Yao, Hongkui Zeng, Bosiljka Tasic, Jerry L. Chen · 2025 · Cell Reports
  79. The Astrocytic Zinc Transporter ZIP12 Is a Synaptic Protein That Contributes to Synaptic Zinc Levels in the Mouse Auditory Cortex
    Abbey Manning, Benjamin Z. Mendelson, Philip T R Bender, Kaitlin Bainer, Rayli Ruby, Victoria Shifflett, Donald F. Dariano, Bradley A. Webb, Werner J. Geldenhuys, Charles T. Anderson · 2025 · Journal of Neuroscience
  80. Multi‐omics delineate growth factor network underlying exercise effects in an Alzheimer's mouse model
    Xin Li, Chaozhong Liu, Wenbo Li, Guantong Qi, Yanwan Dai, Chaohao Gu, Yuxiang Sun, Wenjun Zhou, Veronica C. Ciliberto, Jing Liang et al. · 2025 · Alzheimer s & Dementia
  81. An AAV capsid proposed as microglia-targeting directs genetic expression in forebrain excitatory neurons
    Wenhao Cao, Zhiqun Tan, Bereket T Berackey, Jason K. Nguyen, Sara R. Brown, Shiyang Du, Bin Lin, Qiao Ye, Magdalene J. Seiler, Todd C. Holmes et al. · 2025 · Cell Reports Methods
  82. Key Connectomes and Synaptic‐Compartment‐Specific Risk Genes Drive Pathological α‐Synuclein Spreading
    Yuanxi Li, Justin Torok, Shujing Zhang, Jessica L. Ding, Ning Wang, Courtney Lau, Shruti Kulkarni, Chaitali Anand, Julie Tran, Michael Cheng et al. · 2025 · Advanced Science
  83. Comprehensive analysis of immunoglobulin expression in the mouse brain from embryonic to adult stages
    Keiko Morimoto, Hitomi I. Sano, Michiko Takahashi, Rikuo Takahashi, Kazunori Nakajima · 2025 · Journal of Neuroinflammation
  84. Spatiotemporal characterization of disease-associated neurons in the entorhinal cortex-hippocampal circuit during Alzheimer’s disease progression
    Yuting Ma, Juan Zhang, Dingfeng Li, Dingfeng Li, Sicheng Guo, Jialuo Han, Lei Wang, Xi Su, Xi Su, Yongchang Gao et al. · 2025 · Protein & Cell
  85. Data-driven fine-grained region discovery in the mouse brain with transformers
    Alex J. Lee, Alma Dubuc, Michael Kunst, Shenqin Yao, Nicholas A. Lusk, Lydia Ng, Hongkui Zeng, Bosiljka Tasic, Reza Abbasi-Asl · 2025 · Nature Communications
  86. Position-independent emergence of neocortical neuron molecular identity, connectivity and function
    Sergi Roig‐Puiggros, Maëlle Guyoton, Dmitrii Suchkov, Aurélien Fortoul, Giulio Matteucci, Sabine Fièvre, Alessandra Panzeri, Nikolaos Molochidis, Francesca Barcellini, Emma Maino et al. · 2025 · Nature Neuroscience
  87. Single-cell and isoform-specific translational profiling of the mouse brain
    Samantha L. Sison, Federico Zampa, Eric R. Kofman, Su Yeun Choi, Pratibha Jagannatha, Grady G. Nguyen, Jack T. Naritomi, Asa Shin, Akanksha Khorgade, Wenhao Jin et al. · 2026 · Nature
  88. Cell type‐specific and subcellular expression of phospholipid phosphatase‐related proteins to modulate lyso‐phosphatidic acid synaptic signaling in the developing and adult CNS
    Alexandra Polyzou, Joachim Fuchs, Cristina Kroon · 2024 · Journal of Neurochemistry
  89. Distribution of calbindin-positive neurons across areas and layers of the marmoset cerebral cortex
    Nafiseh Atapour, Marcello G. P. Rosa, Shi Bai, Sylwia Bednarek, Agata Kulesza, Gabriela Saworska, Sadaf Teymornejad, Katrina H. Worthy, Piotr Majka · 2024 · PLoS Computational Biology
  90. Organizational Principles of the Primate Cerebral Cortex at the Single‐Cell Level
    Renrui Chen, Pengxing Nie, Liangxiao Ma, Guang‐Zhong Wang · 2025 · Advanced Science
  91. Decoding the blueprints of embryo development with single-cell and spatial omics
    Chang Xin Liu, Xuerong Li, Qinan Hu, Zihan Jia, Qing Ye, Xianzhe Wang, Kaichen Zhao, Longqi Liu, Mingyue Wang · 2025 · Seminars in Cell and Developmental Biology
  92. Human CLOCK enhances neocortical function
    Yuxiang Liu, Miles R. Fontenot, Ashwinikumar Kulkarni, Nitin Khandelwal, Seon Hye E. Park, Connor J. Criswell, Matthew J. Harper, Pin Xu, Nisha Gupta, Jay R. Gibson et al. · 2025 · Nature Neuroscience
  93. Timing and localization of myasthenia gravis‐related gene expression
    Dana L.E. Vergoossen, Arlin Keo, Ahmed Essam Mahfouz, Maartje G. M. Huijbers · 2021 · European Journal of Neuroscience
  94. Do Corticosteroid Receptor mRNA Levels Predict the Expression of Their Target Genes?
    Lisa L. Koorneef, Eva M. G. Viho, Lucas F Wahl, Onno Cornelis Meijer · 2022 · Journal of the Endocrine Society
  95. A genome and single‐nucleus cerebral cortex transcriptome atlas of the short‐finned pilot whale Globicephala macrorhynchus
    Hui Kang, Qun Liu, Inge Seim, Wenwei Zhang, Hanbo Li, Haiyu Gao, Wenzhi Lin, Mingli Lin, Peijun Zhang, Yaolei Zhang et al. · 2023 · Molecular Ecology Resources
  96. A collection of cannabinoid-related negative findings from autaptic hippocampal neurons
    Alex J. Straiker, Michaela Dvořáková, Taryn Bosquez-Berger · 2023 · Scientific Reports
  97. Microcephaly with a disproportionate hippocampal reduction, stem cell loss and neuronal lipid droplet symptoms in Trappc9 KO mice
    Sultan Aljuraysi, Mark Platt, Michela Pulix, Harish Poptani, Antonius Plagge · 2024 · Neurobiology of Disease
  98. Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS
    Yeganeh M. Marghi, Rohan Gala, Fahimeh Baftizadeh, Uygar Sümbül · 2024 · Nature Computational Science
  99. The autism spectrum disorder risk gene NEXMIF over-synchronizes hippocampal CA1 network and alters neuronal coding
    Rebecca A. Mount, Mohamed Athif, Margaret G. O’Connor, Amith Saligrama, Hua-an Tseng, Sudiksha Sridhar, Chengqian Zhou, Emma Bortz, Erynne San Antonio, Mark Kramer et al. · 2023 · Frontiers in Neuroscience
  100. singlecellVR : interactive visualization of single-cell data in virtual reality
    David F. Stein, Huidong Chen, Michael E. Vinyard, Qian Qin, Rebecca D. Combs, Qian Zhang, Luca Pinello · 2020 · bioRxiv (Cold Spring Harbor Laboratory)