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NOTCH, ERK, and SHH signaling respectively control the fate determination of cortical glia and olfactory bulb interneurons

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Neural Epidermal Growth Factor-Like Like Protein 2 Is Expressed in Human Oligodendroglial Cell Types

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Early developmental origins of cortical disorders modeled in human neural stem cells

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Dual lineage origins contribute to neocortical astrocyte diversity

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Chromatin access regulates the formation of Müller glia‐derived progenitor cells in the retina

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Current genomic deep learning models display decreased performance in cell type-specific accessible regions

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scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases

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The role of single-cell genomics in human genetics

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Fundamental and practical approaches for single-cell ATAC-seq analysis

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Single-Cell Chromatin and Gene-Regulatory Dynamics of Mouse Nephron Progenitors

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Exome sequencing analysis of Japanese autism spectrum disorder case-control sample supports an increased burden of synaptic function-related genes

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CWAS-Plus: estimating category-wide association of rare noncoding variation from whole-genome sequencing data with cell-type-specific functional data

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Best practices for differential accessibility analysis in single-cell epigenomics

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Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoidsPreprint

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ERK signaling expands mammalian cortical radial glial cells and extends the neurogenic period

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Comparative single-cell multiome identifies evolutionary changes in neural progenitor cells during primate brain development

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A Comprehensive Review of the Impact of Machine Learning and Omics on Rare Neurological Diseases

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Chimeric brain models: Unlocking insights into human neural development, aging, diseases, and cell therapies

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Multiomics and deep learning dissect regulatory syntax in human development

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Deep learning approaches for noncoding variant prioritization in neurodegenerative diseases

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Complexity of enhancer networks predicts cell identity and disease genes revealed by single-cell multi-omics analysis

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Unveiling adcyap1 as a protective factor linking pain and nerve regeneration through single-cell RNA sequencing of rat dorsal root ganglion neurons

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Genome-wide prediction of dominant and recessive neurodevelopmental disorder-associated genes

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CXCL12 drives natural variation in coronary artery anatomy across diverse populations

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Epigenetic regulation of reprogramming and pluripotency: insights from histone modifications and their implications for cancer stem cell therapies

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Molecular Signatures in Cortical Development

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STAB2: an updated spatio-temporal cell atlas of the human and mouse brain

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Simultaneous profiling of RNA isoforms and chromatin accessibility of single cells of human retinal organoids

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A multi-omics Mendelian randomization study identifies new therapeutic targets for alcohol use disorder and problem drinking

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Perspective on recent developments and challenges in regulatory and systems genomics

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Reorganization of postmitotic neuronal chromatin accessibility for maturation of serotonergic identity

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A multi-omics approach to visualize early neuronal differentiation from hESCs in 4D

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Using Machine Learning to Explore Shared Genetic Pathways and Possible Endophenotypes in Autism Spectrum Disorder

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Human brain organoids record the passage of time over multiple years in culturePreprint

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Novel anti-inflammatory properties of mannose oligosaccharides in the treatment of inflammatory bowel disease via LGALS3 modulation

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A single-cell multiomic analysis identifies molecular and gene-regulatory mechanisms dysregulated in developing Down syndrome neocortex

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GraphVelo allows for accurate inference of multimodal velocities and molecular mechanisms for single cells

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Disruption of the gene regulatory programme in neurodevelopmental disorders

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Unveiling the novel immune and molecular signatures of ovarian cancer: insights and innovations from single-cell sequencing

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Fast and flexible profiling of chromatin accessibility and total RNA expression in single nuclei using Microwell-seq3

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Single-nucleus transcriptional and chromatin accessible profiles reveal critical cell types and molecular architecture underlying chicken sex determination

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SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics dataPreprint

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Strategies for dissecting the complexity of neurodevelopmental disorders

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Whole-genome sequencing identifies novel genes for autism in Chinese trios

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Brain Organoids: Tools for Understanding the Uniqueness and Individual Variability of the Human Brain

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Learning the cellular origins across cancers using single-cell chromatin landscapes

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Multi-batch single-cell comparative atlas construction by deep learning disentanglement

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Dihydrofolate reductase activity controls neurogenic transitions in the developing neocortex

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scTour: a deep learning architecture for robust inference and accurate prediction of cellular dynamicsPreprint

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Quantifying common and distinct information in single-cell multimodal data with Tilted Canonical Correlation Analysis

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A multi-layered integrative analysis reveals a cholesterol metabolic program in outer radial glia with implications for human brain evolution

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Chromatin-site-specific accessibility: A microtopography-regulated door into the stem cell fate

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