Chronic Infection Depletes Hematopoietic Stem Cells through Stress-Induced Terminal Differentiation
Open accessAbstract
Chronic infections affect a third of the world's population and can cause bone marrow suppression, a severe condition that increases mortality from infection. To uncover the basis for infection-associated bone marrow suppression, we conducted repeated infection of WT mice with Mycobacterium avium. After 4-6 months, mice became pancytopenic. Their hematopoietic stem and progenitor cells (HSPCs) were severely depleted and displayed interferon gamma (IFN-γ) signaling-dependent defects in self-renewal. There was no evidence of increased HSPC mobilization or apoptosis. However, consistent with known effects of IFN-γ, transcriptome analysis pointed toward increased myeloid differentiation of HSPCs and revealed the transcription factor Batf2 as a potential mediator of IFN-γ-induced HSPC differentiation. Gain- and loss-of-function studies uncovered a role for Batf2 in myeloid differentiation in both murine and human systems. We thus demonstrate that chronic infection can deplete HSPCs and identify BATF2 as a mediator of infection-induced HSPC terminal differentiation.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Chronic pro-inflammatory signaling due to chronic infections or repetitive sterile inflammation is detrimental to HSPC self-renewal, promoting loss of quiescence and differentiation.
“Chronic pro-inflammatory signaling due to chronic infections or repetitive sterile inflammation, however, has been shown to be detrimental to HSPC self-renewal, promoting loss of quiescence and differentiation [61–65].”
From Clonal hematopoiesis and inflammation – the perpetual cycle (2023) · cites this paper as [61]
The Discussion (page not supplied) reports that chronic M. avium infection impairs HSC self-renewal and promotes terminal differentiation. The Results also report sustained HSC cell-cycle activity during infection, consistent with loss of quiescence. The paper does not establish the same combination of effects for repetitive sterile inflammation, so it supports the infection portion of this multi-citation claim, not its full scope. (LLM, conf=0.85)
Experimental — accuracy not yet measuredIFN-γ signaling is necessary and sufficient for the fitness of Dnmt3a knockout hematopoiesis.
“supporting that IFN-γ signaling is necessary and sufficient for the fitness of Dnmt3a knockout hematopoiesis.”
From Clonal hematopoiesis and inflammation – the perpetual cycle (2023) · cites this paper as [61]
The Results sections on IFNγ-dependent HSC engraftment and BATF2 loss of function examine infection-related HSC impairment and BATF2-knockout progenitors, respectively; no page numbers are available in our copy. A search for Dnmt3a-knockout hematopoiesis and IFNγ-related fitness found no passage addressing whether IFNγ signaling is necessary and sufficient for that fitness. (LLM, conf=0.70)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Genome engineering using the CRISPR-Cas9 system
Ran, F. A., Hsu, P. D., Wright, J., Agarwala, V., Scott, D. A., & Zhang, F. (2013) · Nature Protocols · doi:10.1038/nprot.2013.143 · Cited by 11,133 · see citing works
Wilson, A., Laurenti, E., Oser, G., van der Wath, R. C., Blanco-Bose, W., Jaworski, M., Offner, S., Dunant, C. F., Eshkind, L., Bockamp, E., et al. (2008) · Cell · doi:10.1016/j.cell.2008.10.048 · Cited by 1,908 · see citing works
A Differentiation Checkpoint Limits Hematopoietic Stem Cell Self-Renewal in Response to DNA Damage
Wang, J., Sun, Q., Morita, Y., Jiang, H., Groß, A., Lechel, A., Hildner, K., Guachalla, L. M., Gompf, A., Hartmann, D., et al. (2012) · Cell · doi:10.1016/j.cell.2012.01.040 · Cited by 343 · see citing works
Highly Efficient Genome Editing of Murine and Human Hematopoietic Progenitor Cells by CRISPR/Cas9
Gundry, M. C., Brunetti, L., Lin, A., Mayle, A. E., Kitano, A., Wagner, D., Hsu, J. I., Hoegenauer, K. A., Rooney, C. M., Goodell, M. A., et al. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.09.092 · Cited by 265 · cited 3× · see citing works
“BATF2 deletion was conducted as described (Gundry et al., 2016).”
Flagged first, then by citations
Research works printed but not linked: 34
- Achi HV Ahui BJ Anon JC Kouassi BA Dje-Bi H Kininlman H 2013 Pancytopenia: a severe complication of miliary tuberculosis Rev Mal Respir 30 33 37 23318187
- Baldridge MT King KY Boles NC Weksberg DC Goodell MA 2010 Quiescent haematopoietic stem cells are activated by IFN-γ in response to chronic infection Nature 465 793 797 20535209 PMC2935898
- Baldridge MT King KY Goodell MA 2011 Inflammatory signals regulate hematopoietic stem cells Trends Immunol 32 57 65 21233016 PMC3042730
- Balmer ML Schürch CM Saito Y Geuking MB Li H Cuenca M Kovtonyuk LV McCoy KD Hapfelmeier S Ochsenbein AF 2014 Microbiota-derived compounds drive steady-state granulopoiesis via MyD88/TICAM signaling J Immunol 193 5273 5283 25305320
- Challen GA Boles NC Chambers SM Goodell MA 2010 Distinct Hematopoietic Stem Cell Subtypes Are Differentially Regulated by TGF-β1 Stem Cell 6 265 278 PMC2837284 20207229
- Ergen AV Boles NC Goodell MA 2012 Rantes/Ccl5 influences hematopoietic stem cell subtypes and causes myeloid skewing Blood 119 2500 2509 22289892 PMC3311273
- Esplin BL Shimazu T Welner RS Garrett KP Nie L Zhang Q Humphrey MB Yang Q Borghesi LA Kincade PW 2011 Chronic exposure to a TLR ligand injures hematopoietic stem cells J Immunol 186 5367 5375 21441445 PMC3086167
- Essers MAG Offner S Blanco-Bose WE Waibler Z Kalinke U Duchosal MA Trumpp A 2009 IFNalpha activates dormant haematopoietic stem cells in vivo Nature 458 904 908 19212321
- Feng CG Weksberg DC Taylor GA Sher A Goodell MA 2008 The p47 GTPase Lrg-47 (Irgm1) links host defense and hematopoietic stem cell proliferation Cell Stem Cell 2 83 89 18371424 PMC2278017
- Fitzgerald D Haas DW 2005 Mycobacterium tuberculosis Principles and Practice of Infectious Diseases Mandell GL Bennett JE Dolin R Philadelphia, PA Elsevier 2852 2886
- Flórido M Pearl JE Solache A Borges M Haynes L Cooper AM Appelberg R 2005 Gamma interferon-induced T-cell loss in virulent Mycobacterium avium infection Infection and Immunity 73 3577 3586 15908387 PMC1111831
- Goodell MA Brose K Paradis G Conner AS Mulligan RC 1996 Isolation and functional properties of murine hematopoietic stem cells that are replicating in vivo J Exp Med 183 1797 1806 8666936 PMC2192511
- King KY Baldridge MT Weksberg DC Chambers SM Lukov GL Wu S Boles NC Jung SY Qin J Liu D 2011 Irgm1 protects hematopoietic stem cells by negative regulation of IFN signaling Blood 118 1525 1533 21633090 PMC3156044
- Kristinsson SY Björkholm M Hultcrantz M Derolf ÅR Landgren O Goldin LR 2011 Chronic immune stimulation might act as a trigger for the development of acute myeloid leukemia or myelodysplastic syndromes Journal of Clinical Oncology 29 2897 2903 21690473 PMC3138717
- Kunisaki Y Bruns I Scheiermann C Ahmed J Pinho S Zhang D Mizoguchi T Wei Q Lucas D Ito K 2013 Arteriolar niches maintain haematopoietic stem cell quiescence Nature 502 637 643 24107994 PMC3821873
- Lin FC Karwan M Saleh B Hodge DL Chan T Boelte KC Keller JR Young HA 2014 IFN-γ causes aplastic anemia by altering hematopoietic stem/progenitor cell composition and disrupting lineage differentiation Blood 124 3699 3708 25342713 PMC4263980
- Matatall KA Shen CC Challen GA King KY 2014 Type II interferon promotes differentiation of myeloid-biased hematopoietic stem cells Stem Cells 32 3023 3030 25078851 PMC4198460
- McCabe A Zhang Y Thai V Jones M Jordan MB MacNamara KC 2015 Macrophage-Lineage Cells Negatively Regulate the Hematopoietic Stem Cell Pool in Response to Interferon Gamma at Steady State and During Infection Stem Cells 33 2294 2305 25880153 PMC4693298
- Nagai Y Garrett KP Ohta S Bahrun U Kouro T Akira S Takatsu K Kincade PW 2006 Toll-like receptors on hematopoietic progenitor cells stimulate innate immune system replenishment Immunity 24 801 812 16782035 PMC1626529
- Notta F Zandi S Takayama N Dobson S Gan OI Wilson G Kaufmann KB McLeod J Laurenti E Dunant CF 2016 Distinct routes of lineage development reshape the human blood hierarchy across ontogeny Science 351 aab2116 26541609 PMC4816201
- Park H Jang H Kim C Chung B Chang CL Park SK Song S 2000 Detection and identification of mycobacteria by amplification of the internal transcribed spacer regions with genus- and species-specific PCR primers J Clin Microbiol 38 4080 4085 11060072 PMC87545
- Pietras EM Mirantes-Barbeito C Fong S Loeffler D Kovtonyuk LV Zhang S Lakshminarasimhan R Chin CP Techner JM Will B 2016 Chronic interleukin-1 exposure drives haematopoietic stem cells towards precocious myeloid differentiation at the expense of self-renewal Nat Cell Biol 18 607 618 27111842 PMC4884136
- Ramos-Casals M García-Carrasco M López-Medrano F Trejo O Forns X López-Guillermo A Muñoz C Ingelmo M Font J 2003 Severe autoimmune cytopenias in treatment-naive hepatitis C virus infection: clinical description of 35 cases Medicine (Baltimore) 82 87 96 12640185
- Roy S Guler R Parihar SP Schmeier S Kaczkowski B Nishimura H Shin JW Negishi Y Ozturk M Hurdayal R 2015 Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection J Immunol 194 6035 6044 25957166
- Santos MA Faryabi RB Ergen AV Day AM Malhowski A Canela A Onozawa M Lee J Callen E Gutierrez-Martinez P 2014 DNA-damage-induced differentiation of leukaemic cells as an anti-cancer barrier Nature 514 107 111 25079327 PMC4410707
- Sato T Onai N Yoshihara H Arai F Suda T Ohteki T 2009 Interferon regulatory factor-2 protects quiescent hematopoietic stem cells from type I interferon-dependent exhaustion Nat Med 15 696 700 19483695
- Scadden DT Zon LI Groopman JE 1989 Pathophysiology and management of HIV-associated hematologic disorders Blood 74 1455 1463 2676010
- Takizawa H Boettcher S Manz MG 2012 Demand-adapted regulation of early hematopoiesis in infection and inflammation Blood 119 2991 3002 22246037
- Tussiwand R Lee W Murphy TL Mashayekhi M Wumesh KC Albring JC Satpathy AT Rotondo JA Edelson BT Kretzer NM 2012 Compensatory dendritic cell development mediated by BATF-IRF interactions Nature 490 502 507 22992524 PMC3482832
- Viallard JF Parrens M Boiron JM Texier J Mercie P Pellegrin JL 2002 Reversible myelofibrosis induced by tuberculosis Clin Infect Dis 34 1641 1643 12032901
- Walter D Lier A Geiselhart A Thalheimer FB Huntscha S Sobotta MC Moehrle B Brocks D Bayindir I Kaschutnig P 2015 Exit from dormancy provokes DNA-damage-induced attrition in haematopoietic stem cells Nature 520 549 552 25707806
- Yang L Dybedal I Bryder D Nilsson L Sitnicka E Sasaki Y Jacobsen SEW 2005 IFN-gamma negatively modulates self-renewal of repopulating human hemopoietic stem cells J Immunol 174 752 757 15634895
- Yoshizato T Dumitriu B Hosokawa K Makishima H Yoshida K Townsley D Sato-Otsubo A Sato Y Liu D Suzuki H 2015 Somatic Mutations and Clonal Hematopoiesis in Aplastic Anemia N Engl J Med 373 35 47 26132940 PMC7478337
- Zeng W Miyazato A Chen G Kajigaya S Young NS Maciejewski JP 2006 Interferon-gamma-induced gene expression in CD34 cells: identification of pathologic cytokine-specific signature profiles Blood 107 167 175 16131564 PMC1895358
Cited by
Sorted by citations
Senescence in Health and Disease
He, S., & Sharpless, N. E. (2017) · Cell · doi:10.1016/j.cell.2017.05.015 · Cited by 1,766 · see citing works
Inflammation: a key regulator of hematopoietic stem cell fate in health and disease
Pietras, E. M. (2017) · Blood · doi:10.1182/blood-2017-06-780882 · Cited by 417 · see citing works
Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling
Hormaechea-Agulla, D., Matatall, K. A., Le, D. T., Kain, B., Long, X., Kus, P., Jaksik, R., Challen, G. A., Kimmel, M., & King, K. Y. (2021) · Cell Stem Cell · doi:10.1016/j.stem.2021.03.002 · Cited by 329 · see citing works
Self-citationBogeska, R., Mikecin, A.-M., Kaschutnig, P., Fawaz, M., Büchler-Schäff, M., Le, D., Ganuza, M., Vollmer, A., Paffenholz, S. V., Asada, N., et al. (2022) · Cell Stem Cell · doi:10.1016/j.stem.2022.06.012 · Cited by 299 · see citing works
Self-citationResistance to inflammation underlies enhanced fitness in clonal hematopoiesis
Avagyan, S., Henninger, J. E., Mannherz, W. P., Mistry, M., Yoon, J., Yang, S., Weber, M. C., Moore, J. L., & Zon, L. I. (2021) · Science · doi:10.1126/science.aba9304 · Cited by 192 · see citing works
Clonal hematopoiesis: Mutation-specific adaptation to environmental change
Florez, M. A., Tran, B. T., Wathan, T. K., DeGregori, J., Pietras, E. M., & King, K. Y. (2022) · Cell Stem Cell · doi:10.1016/j.stem.2022.05.006 · Cited by 129 · see citing works
Self-citationInflammatory signaling regulates hematopoietic stem and progenitor cell development and homeostasis
Collins, A., Mitchell, C. A., & Passegué, E. (2021) · Journal of Experimental Medicine · doi:10.1084/jem.20201545 · Cited by 111 · see citing works
The role of interferon-gamma in hematopoietic stem cell development, homeostasis, and disease
Morales-Mantilla, D. E., & King, K. Y. (2018) · Current Stem Cell Reports · doi:10.1007/s40778-018-0139-3 · Cited by 99 · see citing works
Self-citationPU.1 enforces quiescence and limits hematopoietic stem cell expansion during inflammatory stress
Chavez, J. S., Rabe, J. L., Loeffler, D., Higa, K. C., Hernandez, G., Mills, T. S., Ahmed, N., Gessner, R. L., Ke, Z., Idler, B. M., et al. (2021) · Journal of Experimental Medicine · doi:10.1084/jem.20201169 · Cited by 91 · see citing works
“Likewise, deletion of Pten, which dephosphorylates and inhibits the eIF activator mTOR, leads to similar aberrant HSC activity and hypersensitivity to inflammatory factors such as G-CSF and IFNs (Porter et al., 2016; Signer et al., 2014).”
BackgroundInfluentialClonal hematopoiesis and inflammation – the perpetual cycle
Avagyan, S., & Zon, L. I. (2023) · Trends in Cell Biology · doi:10.1016/j.tcb.2022.12.001 · Cited by 79 · see citing works
Hernandez, G., Mills, T. S., Rabe, J. L., Chavez, J. S., Kuldanek, S., Kirkpatrick, G., Noetzli, L., Jubair, W. K., Zanche, M., Myers, J. R., et al. (2020) · Haematologica · doi:10.3324/haematol.2018.197210 · Cited by 58 · see citing works
Higa, K. C., Goodspeed, A., Chavez, J. S., De Dominici, M., Danis, E., Zaberezhnyy, V., Rabe, J. L., Tenen, D. G., Pietras, E. M., & DeGregori, J. (2021) · Journal of Experimental Medicine · doi:10.1084/jem.20200560 · Cited by 57 · see citing works
Rabe, J. L., Hernandez, G., Chavez, J. S., Mills, T. S., Nerlov, C., & Pietras, E. M. (2020) · Experimental Hematology · doi:10.1016/j.exphem.2019.12.003 · Cited by 49 · see citing works
A review of mathematical modeling of bone remodeling from a systems biology perspective
Cook, C. V., Lighty, A. M., Smith, B. J., & Ford Versypt, A. N. (2024) · Frontiers in Systems Biology · doi:10.3389/fsysb.2024.1368555 · Cited by 25 · see citing works
The bone marrow hematopoietic niche and its adaptation to infection
Gomes, A. C., Saraiva, M., & Gomes, M. S. (2021) · Seminars in Cell & Developmental Biology · doi:10.1016/j.semcdb.2020.05.014 · Cited by 18 · see citing works
- Authors
- Matatall, K. A., Jeong, M., Chen, S., Sun, D., Chen, F., Mo, Q., Kimmel, M., & King, K. Y.
- Affiliations
- Baylor College of Medicine (US)
- Rice University (US)
- Texas A&M Health Science Center (US)
- Silesian University of Technology (PL)
- Corresponding author
- King, Katherine Y.
- ORCID
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2016-12
- Volume
- 17
- Issue
- 10
- Pages
- 2584-2595
- ISSN
- 2211-1247 (ISSN-L)
- PMC
- PMC5161248
- OpenAlex
- W2560439679
- Cited by
- 262
- References
- 4
- Citations by year
- 2026: 14 · 2025: 27 · 2024: 33 · 2023: 37 · 2022: 30 · 2021: 38 · 2020: 33 · 2019: 19 · 2018: 20 · 2017: 9 · 2016: 1
- FWCI
- 15.54
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Cell Reports (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Rice Research Repository (Rice University) (submittedVersion, cc-by-nc-nd)
- Funders
- Cytometry and Cell Sorting Core
- NIAID (P30AI036211)
- NCI (P30CA125123)
- NCRR (S10RR024574)
- Integrated Microscopy Core (HD007495, DK56338, CA125123)
- Dan L. Duncan Cancer Center
- John S. Dunn Gulf Coast Consortium for Chemical Genetics
- NIDDK (DK060445)
- NHLBI (HL128173-02, K08HL098898)
- Department of Defense (10505346)
- Caroline Wiess Law Foundation for Molecular Medicine
- Aplastic Anemia and MDS International Foundation
- March of Dimes Basil O’Connor Starter Scholar Award
- Topics
- Health Sciences › Medicine › Hematology › Hematopoietic Stem Cell Transplantation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Blood disorders and treatments
- Health Sciences › Medicine › Hematology › Acute Myeloid Leukemia Research
- Keywords
- chronic infection, hematopoietic stem and progenitor cells, Mycobacterium avium, interferon-gamma signaling, BATF2, myeloid differentiation, terminal differentiation, myelosuppression, pancytopenia, self-renewal, hematopoiesis
- MeSH terms
- Cell Self Renewal, Animals, Bone Marrow Cells, Cell Differentiation, Hematopoietic Stem Cells, Humans, Infections, Interferon-gamma, Mycobacterium avium, Signal Transduction, Cell Proliferation, Basic-Leucine Zipper Transcription Factors, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review