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Combinatorial pathway balancing provides biosynthetic access to 2-fluoro-cis,cis-muconate in engineered Pseudomonas putida
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Mineral F− is released during microbial biodegradation of organofluorines.
“Additionally, mineral F− is released during microbial biodegradation of organofluorines (Bygd et al., 2021; Neilson & Allard, 2002; Wackett, 2021a; Wackett, 2022; Wirth & Nikel, 2021)”
From Role of the CrcB transporter of Pseudomonas putida in the multi‐level stress response elicited by mineral fluoride (2022) · cites this paper as Wirth & Nikel, 2021
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Contribution of Organofluorine Compounds to Pharmaceuticals
Inoue, M., Sumii, Y., & Shibata, N. (2020) · ACS Omega · doi:10.1021/acsomega.0c00830 · Cited by 1,944
Current Contributions of Organofluorine Compounds to the Agrochemical Industry
Ogawa, Y., Tokunaga, E., Kobayashi, O., Hirai, K., & Shibata, N. (2020) · iScience · doi:10.1016/j.isci.2020.101467 · Cited by 1,253
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Research works printed but not linked: 118
- Khalil, 2020, Muconic acid isomers as platform chemicals and monomers in the biobased economy, Green Chem., 22, 1517, 10.1039/C9GC04161C · DOI
- Carraher, 2017, cis,cis-Muconic acid isomerization and catalytic conversion to biobased cyclic-C6-1,4-diacid monomers, Green Chem., 19, 3042, 10.1039/C7GC00658F · DOI
- Xie, 2014, Biotechnological production of muconic acid: current status and future prospects, Biotechnol. Adv., 32, 615, 10.1016/j.biotechadv.2014.04.001 · DOI
- Lu, 2016, Production of diethyl terephthalate from biomass-derived muconic acid, Angew. Chem. Int. Ed., 55, 249, 10.1002/anie.201509149 · DOI
- Thompson, 2018, Muconic acid production via alternative pathways and a synthetic "metabolic funnel", ACS Synth. Biol., 7, 565, 10.1021/acssynbio.7b00331 · DOI
- Kruyer, 2020, Fully biological production of adipic acid analogs from branched catechols, Sci. Rep., 10, 13367, 10.1038/s41598-020-70158-z · DOI
- Weber, 2012, Biosynthesis of cis,cis-muconic acid and its aromatic precursors, catechol and protocatechuic acid, from renewable feedstocks by Saccharomyces cerevisiae, Appl. Environ. Microbiol., 78, 8421, 10.1128/AEM.01983-12 · DOI
- Polen, 2012, Toward biotechnological production of adipic acid and precursors from biorenewables, J. Biotechnol., 167, 75, 10.1016/j.jbiotec.2012.07.008 · DOI
- Beerthuis, 2015, Catalytic routes towards acrylic acid, adipic acid and ε-caprolactam starting from biorenewables, Green Chem., 17, 1341, 10.1039/C4GC02076F · DOI
- Kruyer, 2017, Metabolic engineering strategies to bio-adipic acid production, Curr. Opin. Biotechnol., 45, 136, 10.1016/j.copbio.2017.03.006 · DOI
- Becker, 2018, Metabolic engineering of Corynebacterium glutamicum for the production of cis,cis-muconic acid from lignin, Microb. Cell Fact., 17, 115, 10.1186/s12934-018-0963-2 · DOI
- Mizuno, 1988, Microbial production of cis,cis-muconic acid from benzoic acid, Appl. Microbiol. Biotechnol., 28, 20, 10.1007/BF00250491 · DOI
- Kohlstedt, 2018, From lignin to nylon: cascaded chemical and biochemical conversion using metabolically engineered Pseudomonas putida, Metab. Eng., 47, 279, 10.1016/j.ymben.2018.03.003 · DOI
- Schmidt, 1984, Production of cis,cis-muconate from benzoate and 2-fluoro-cis,cis-muconate from 3-fluorobenzoate by 3-chlorobenzoate degrading bacteria, Appl. Microbiol. Biotechnol., 20, 351, 10.1007/BF00270599 · DOI
- Vardon, 2016, cis,cis-Muconic acid: separation and catalysis to bio-adipic acid for nylon-6,6 polymerization, Green Chem., 18, 3397, 10.1039/C5GC02844B · DOI
- Choi, 2020, Recent advances in microbial production of cis,cis-muconic acid, Biomolecules, 10, 1238, 10.3390/biom10091238 · DOI
- Deuss, 2021, 'Lignin-first' catalytic valorization for generating higher value from lignin, Chem. Catal., 1, 8
- Salvachúa, 2018, Bioprocess development for muconic acid production from aromatic compounds and lignin, Green Chem., 20, 5007, 10.1039/C8GC02519C · DOI
- Nieto-Domínguez, 2020, Intersecting xenobiology and neo-metabolism to bring novel chemistries to life, ChemBioChem, 21, 2551, 10.1002/cbic.202000091 · DOI
- O'Hagan, 2008, Understanding organofluorine chemistry. An introduction to the C-F bond, Chem. Soc. Rev., 37, 308, 10.1039/B711844A · DOI
- Fang, 2019, Synthetic approaches and pharmaceutical applications of chloro-containing molecules for drug discovery: a critical review, Eur. J. Med. Chem., 173, 117, 10.1016/j.ejmech.2019.03.063 · DOI
- Calero, 2020, A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida, Nat. Commun., 11, 5045, 10.1038/s41467-020-18813-x · DOI · Paper page
- Murphy, 2009, Metabolism of fluoroorganic compounds in microorganisms: impacts for the environment and the production of fine chemicals, Appl. Microbiol. Biotechnol., 84, 617, 10.1007/s00253-009-2127-0 · DOI
- Wu, 2020, Fluorine biocatalysis, Curr. Opin. Chem. Biol., 55, 119, 10.1016/j.cbpa.2020.01.004 · DOI
- Martinelli, 2019, Breaking the state-of-the-art in the chemical industry with new-to-Nature products via synthetic microbiology, Microb. Biotechnol., 12, 187, 10.1111/1751-7915.13372 · DOI
- Calero, 2019, Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non-traditional microorganisms, Microb. Biotechnol., 12, 98, 10.1111/1751-7915.13292 · DOI
- Nikel, 2014, Biotechnological domestication of pseudomonads using synthetic biology, Nat. Rev. Microbiol., 12, 368, 10.1038/nrmicro3253 · DOI
- Poblete-Castro, 2020, Biochemistry, genetics, and biotechnology of glycerol utilization in Pseudomonas species, Microb. Biotechnol., 13, 32, 10.1111/1751-7915.13400 · DOI
- Volke, 2020, Pseudomonas putida, Trends Microbiol., 28, 512, 10.1016/j.tim.2020.02.015 · DOI
- Liu, 2019, Recent trends in metabolic engineering of microbial chemical factories, Curr. Opin. Biotechnol., 60, 188, 10.1016/j.copbio.2019.05.010 · DOI
- Goldman, 1967, Fluorine containing metabolites formed from 2-fluorobenzoic acid by a Pseudomonas species, Arch. Biochem. Biophys., 118, 178, 10.1016/0003-9861(67)90295-0 · DOI
- Schreiber, 1980, Critical reactions in fluorobenzoic acid degradation by Pseudomonas sp, B13. Appl. Environ. Microbiol., 39, 58, 10.1128/aem.39.1.58-67.1980 · DOI
- Oltmanns, 1989, Evidence for a new pathway in the bacterial degradation of 4-fluorobenzoate, Appl. Environ. Microbiol., 55, 2499, 10.1128/aem.55.10.2499-2504.1989 · DOI
- Kiel, 2015, The biodegradation vs. biotransformation of fluorosubstituted aromatics, Appl. Microbiol. Biotechnol., 99, 7433, 10.1007/s00253-015-6817-5 · DOI · Paper page
- Engesser, 1980, Adaptation of Alcaligenes eutrophus B9 and Pseudomonas sp. B13 to 2-fluorobenzoate as growth substrate, Appl. Environ. Microbiol., 39, 68, 10.1128/aem.39.1.68-73.1980 · DOI
- Nakazawa, 2002, Travels of a Pseudomonas, from Japan around the world, Environ. Microbiol., 4, 782, 10.1046/j.1462-2920.2002.00310.x · DOI
- Nishikawa, 2008, Functional analyses of Pseudomonas putida benzoate transporters expressed in the yeast Saccharomyces cerevisiae, Biosci. Biotechnol. Biochem., 72, 2034, 10.1271/bbb.80156 · DOI · Paper page
- Rivard, 2015, Rate-determining attack on substrate precedes Rieske cluster oxidation during cis-dihydroxylation by benzoate dioxygenase, Biochemistry, 54, 4652, 10.1021/acs.biochem.5b00573 · DOI
- Ferraro, 2005, Rieske business: structure-function of Rieske non-heme oxygenases, Biochem. Biophys. Res. Commun., 338, 175, 10.1016/j.bbrc.2005.08.222 · DOI
- Wolfe, 2002, Benzoate 1,2-dioxygenase from Pseudomonas putida: single turnover kinetics and regulation of a two-component Rieske dioxygenase, Biochemistry, 41, 9611, 10.1021/bi025912n · DOI
- Yamaguchi, 1978, Characterization of NADH-cytochrome c reductase, a component of benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1, J. Biol. Chem., 253, 8848, 10.1016/S0021-9258(17)34255-2 · DOI
- Yamaguchi, 1982, Subunit structure of oxygenase component in benzoate-1,2-dioxygenase system from Pseudomonas arvilla C-1, J. Biol. Chem., 257, 12497, 10.1016/S0021-9258(18)33538-5 · DOI
- Karlsson, 2002, X-Ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1, J. Mol. Biol., 318, 261, 10.1016/S0022-2836(02)00039-6 · DOI
- Reiner, 1972, Metabolism of aromatic compounds in bacteria. Purification and properties of the catechol-forming enzyme, 3,5-cyclohexadiene-1,2-diol-1-carboxylic acid (NAD+) oxidoreductase (decarboxylating), J. Biol. Chem., 247, 4960, 10.1016/S0021-9258(19)44924-7 · DOI
- Neidle, 1987, Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation, J. Bacteriol., 169, 5496, 10.1128/jb.169.12.5496-5503.1987 · DOI
- Neidle, 1992, cis-Diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily, Eur. J. Biochem., 204, 113, 10.1111/j.1432-1033.1992.tb16612.x · DOI
- Hayaishi, 1957, Studies on oxygenases; pyrocatechase, J. Biol. Chem., 229, 905, 10.1016/S0021-9258(19)63695-1 · DOI
- Ridder, 1998, Quantitative structure/activity relationship for the rate of conversion of C4-substituted catechols by catechol-1,2-dioxygenase from Pseudomonas putida (arvilla) C1, Eur. J. Biochem., 257, 92, 10.1046/j.1432-1327.1998.2570092.x · DOI
- Jiménez, 2014, A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol, Environ. Microbiol., 16, 1767, 10.1111/1462-2920.12361 · DOI
- Valley, 2005, Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis, Biochemistry, 44, 11024, 10.1021/bi050902i · DOI
- Reineke, 1988, Microbial degradation of haloaromatics, Annu. Rev. Microbiol., 42, 263, 10.1146/annurev.mi.42.100188.001403 · DOI
- Dorn, 1978, Chemical structure and biodegradability of halogenated aromatic compounds. Two catechol 1,2-dioxygenases from a 3-chlorobenzoate-grown pseudomonad, Biochem. J., 174, 73, 10.1042/bj1740073 · DOI
- Milne, 1968, The metabolism of 2-fluorobenzoic acid. II. Studies with 18-O2, J. Biol. Chem., 243, 5374, 10.1016/S0021-9258(18)91959-9 · DOI
- Miyazaki, 2015, Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds, Environ. Microbiol., 17, 91, 10.1111/1462-2920.12498 · DOI
- Belda, 2016, The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis, Environ. Microbiol., 18, 3403, 10.1111/1462-2920.13230 · DOI · Paper page
- Oltmanns, 1988, Degradation of 1,4-dichlorobenzene by enriched and constructed bacteria, Appl. Microbiol. Biotechnol., 28, 609, 10.1007/BF00250421 · DOI
- Ravatn, 1998, Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms, Appl. Environ. Microbiol., 64, 2126, 10.1128/AEM.64.6.2126-2132.1998 · DOI
- Gaillard, 2006, The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties, J. Bacteriol., 188, 1999, 10.1128/JB.188.5.1999-2013.2006 · DOI
- Schmidt, 1980, Chemical structure and biodegradability of halogenated aromatic compounds—halogenated muconic acids as intermediates, Biochem. J., 192, 331, 10.1042/bj1920331 · DOI
- Yamaguchi, 1980, Purification and characterization of an oxygenase component in benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1, J. Biol. Chem., 255, 5058, 10.1016/S0021-9258(19)70748-0 · DOI
- Schweigert, 2001, Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals, Environ. Microbiol., 3, 81, 10.1046/j.1462-2920.2001.00176.x · DOI
- Borraccino, 2001, Abiotic transformation of catechol and 1-naphthol in aqueous solution—influence of environmental factors, Water Res., 35, 3729, 10.1016/S0043-1354(01)00097-5 · DOI
- Mutalik, 2013, Precise and reliable gene expression via standard transcription and translation initiation elements, Nat. Methods, 10, 354, 10.1038/nmeth.2404 · DOI
- Silva-Rocha, 2013, The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes, Nucleic Acids Res., 41, D666, 10.1093/nar/gks1119 · DOI
- Platt, 2000, Genetic system for reversible integration of DNA constructs and lacZ gene fusions into the Escherichia coli chromosome, Plasmid, 43, 12, 10.1006/plas.1999.1433 · DOI
- Worsey, 1975, Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid, J. Bacteriol., 124, 7, 10.1128/jb.124.1.7-13.1975 · DOI
- Bagdasarian, 1981, Specific purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas, Gene, 16, 237, 10.1016/0378-1119(81)90080-9 · DOI
- Stolz, 2007, Pseudomonas knackmussii sp. nov, Internat. J. Syst. Evol. Microbiol., 57, 572, 10.1099/ijs.0.64761-0 · DOI
- Bakke, 2009, Random mutagenesis of the Pm promoter as a powerful strategy for improvement of recombinant-gene expression, Appl. Environ. Microbiol., 75, 2002, 10.1128/AEM.02315-08 · DOI
- Volke, 2020, Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida, Microb. Biotechnol., 13, 222, 10.1111/1751-7915.13383 · DOI
- Cowles, 2000, BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida, J. Bacteriol., 182, 6339, 10.1128/JB.182.22.6339-6346.2000 · DOI
- Kim, 2013, Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes, Environ. Microbiol. Rep., 5, 883, 10.1111/1758-2229.12090 · DOI
- Domínguez-Cuevas, 2008, Roles of effectors in XylS-dependent transcription activation: intramolecular domain derepression and DNA binding, J. Bacteriol., 190, 3118, 10.1128/JB.01784-07 · DOI
- Marqués, 1999, The XylS-dependent Pm promoter is transcribed in vivo by RNA polymerase with σ32 or σ38 depending on the growth phase, Mol. Microbiol., 31, 1105, 10.1046/j.1365-2958.1999.01249.x · DOI
- Ramos, 1990, Signal-regulator interactions, genetic analysis of the effector binding site of xylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon, J. Mol. Biol., 211, 373, 10.1016/0022-2836(90)90358-S · DOI
- Arce-Rodríguez, 2016, The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of Pseudomonas putida, Environ. Microbiol., 18, 3309, 10.1111/1462-2920.13052 · DOI
- Moreno, 2015, The Crc and Hfq proteins of Pseudomonas putida cooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs, Environ. Microbiol., 17, 105, 10.1111/1462-2920.12499 · DOI
- Goñi-Moreno, 2017, Deconvolution of gene expression noise into spatial dynamics of transcription factor-promoter interplay, ACS Synth. Biol., 6, 1359, 10.1021/acssynbio.6b00397 · DOI
- Zobel, 2015, Tn7-Based device for calibrated heterologous gene expression in Pseudomonas putida, ACS Synth. Biol., 4, 1341, 10.1021/acssynbio.5b00058 · DOI
- Kusumawardhani, 2021, Adaptive laboratory evolution restores solvent tolerance in plasmid-cured Pseudomonas putida S12: a molecular analysis, Appl. Environ. Microbiol., 87, 10.1128/AEM.00041-21 · DOI
- Mohamed, 2020, Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance, Metab. Eng. Commun., 11, e00143, 10.1016/j.mec.2020.e00143 · DOI · Paper page
- Kuepper, 2020, Adaptive laboratory evolution of Pseudomonas putida and Corynebacterium glutamicum to enhance anthranilate tolerance, Microbiology, 166, 1025, 10.1099/mic.0.000982 · DOI
- van Duuren, 2012, pH-stat fed-batch process to enhance the production of cis,cis-muconate from benzoate by Pseudomonas putida KT2440-JD1, Biotechnol. Prog., 28, 85, 10.1002/btpr.709 · DOI
- Zhou, 2009, Fluorine bonding—how does it work in protein-ligand interactions?, J. Chem. Inf. Model., 49, 2344, 10.1021/ci9002393 · DOI
- Olsen, 2004, Fluorine interactions at the thrombin active site: protein backbone fragments H-Cα-C-O comprise a favorable C-F environment and interactions of C-F with electrophiles, ChemBioChem, 5, 666, 10.1002/cbic.200300907 · DOI
- Paulini, 2005, Orthogonal multipolar interactions in structural chemistry and biology, Angew. Chem. Int. Ed., 44, 1788, 10.1002/anie.200462213 · DOI
- Nagar, 2014, Potent inhibition of mandelate racemase by a fluorinated substrate-product analogue with a novel binding mode, Biochemistry, 53, 1169, 10.1021/bi401703h · DOI
- Tover, 2001, Growth medium composition-determined regulatory mechanisms are superimposed on CatR-mediated transcription from the pheBA and catBCA promoters in Pseudomonas putida, Microbiology, 147, 2149, 10.1099/00221287-147-8-2149 · DOI
- Moreno, 2008, The target for the Pseudomonas putida Crc global regulator in the benzoate degradation pathway is the BenR transcriptional regulator, J. Bacteriol., 190, 1539, 10.1128/JB.01604-07 · DOI
- Pérez-Pantoja, 2015, The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation, Environ. Microbiol., 17, 64, 10.1111/1462-2920.12443 · DOI
- Jeffrey, 1992, J. Bacteriol., 174, 4986, 10.1128/jb.174.15.4986-4996.1992 · DOI
- Rothmel, 1991, Functional analysis of the Pseudomonas putida regulatory protein CatR: transcriptional studies and determination of the CatR DNA-binding site by hydroxyl-radical footprinting, J. Bacteriol., 173, 4717, 10.1128/jb.173.15.4717-4724.1991 · DOI
- D'Arrigo, 2019, Analysis of Pseudomonas putida growth on non-trivial carbon sources using transcriptomics and genome-scale modelling, Environ. Microbiol. Rep., 11, 87, 10.1111/1758-2229.12704 · DOI
- Wada, 2021, Characterization of aromatic acid/proton symporters in Pseudomonas putida KT2440 toward efficient microbial conversion of lignin-related aromatics, Metab. Eng., 64, 167, 10.1016/j.ymben.2021.01.013 · DOI
- Kukurugya, 2019, Multi-omics analysis unravels a segregated metabolic flux network that tunes co-utilization of sugar and aromatic carbons in Pseudomonas putida, J. Biol. Chem., 294, 8464, 10.1074/jbc.RA119.007885 · DOI
- Sudarsan, 2016, Dynamics of benzoate metabolism in Pseudomonas putida KT2440, Metab. Eng. Commun., 3, 97, 10.1016/j.meteno.2016.03.005 · DOI
- Morales, 2004, The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compounds, J. Bacteriol., 186, 1337, 10.1128/JB.186.5.1337-1344.2004 · DOI
- Hester, 2000, Crc is involved in catabolite repression control of the bkd operons of Pseudomonas putida and Pseudomonas aeruginosa, J. Bacteriol., 182, 1144, 10.1128/JB.182.4.1144-1149.2000 · DOI
- del Castillo, 2007, Simultaneous catabolite repression between glucose and toluene metabolism in Pseudomonas putida is channeled through different signaling pathways, J. Bacteriol., 189, 6602, 10.1128/JB.00679-07 · DOI
- Johnson, 2017, Eliminating a global regulator of carbon catabolite repression enhances the conversion of aromatic lignin monomers to muconate in Pseudomonas putida KT2440, Metab. Eng. Commun., 5, 19, 10.1016/j.meteno.2017.05.002 · DOI
- Rojo, 2010, Carbon catabolite repression in Pseudomonas: optimizing metabolic versatility and interactions with the environment, FEMS Microbiol. Rev., 34, 658, 10.1111/j.1574-6976.2010.00218.x · DOI
- Molina, 2019, Influence of the Crc global regulator on substrate uptake rates and the distribution of metabolic fluxes in Pseudomonas putida KT2440 growing in a complete medium, Environ. Microbiol., 21, 4446, 10.1111/1462-2920.14812 · DOI
- Smanski, 2016, Synthetic biology to access and expand nature's chemical diversity, Nat. Rev. Microbiol., 14, 135, 10.1038/nrmicro.2015.24 · DOI
- Ko, 2020, Tools and strategies of systems metabolic engineering for the development of microbial cell factories for chemical production, Chem. Soc. Rev., 49, 4615, 10.1039/D0CS00155D · DOI
- Narayan, 2013, Re-engineering Nature's catalysts, Science, 339, 283, 10.1126/science.1233324 · DOI
- Nielsen, 2016, Engineering cellular metabolism, Cell, 164, 1185, 10.1016/j.cell.2016.02.004 · DOI
- Nikel, 2018, Pseudomonas putida as a functional chassis for industrial biocatalysis: from native biochemistry to trans-metabolism, Metab. Eng., 50, 142, 10.1016/j.ymben.2018.05.005 · DOI · Paper page
- Hartmans, 1989, Metabolism of styrene oxide and 2-phenylethanol in the styrene-degrading Xanthobacter strain 124X, Appl. Environ. Microbiol., 55, 2850, 10.1128/aem.55.11.2850-2855.1989 · DOI
- Cavaleiro, 2015, Accurate DNA assembly and genome engineering with optimized uracil excision cloning, ACS Synth. Biol., 4, 1042, 10.1021/acssynbio.5b00113 · DOI
- Genee, 2015, Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly, ACS Synth. Biol., 4, 342, 10.1021/sb500194z · DOI
- Sánchez-Pascuala, 2017, Refactoring the Embden-Meyerhof-Parnas pathway as a whole of portable GlucoBricks for implantation of glycolytic modules in Gram-negative bacteria, ACS Synth. Biol., 6, 793, 10.1021/acssynbio.6b00230 · DOI
- Volke, 2021, Rapid genome engineering of Pseudomonas assisted by fluorescent markers and tractable curing of plasmids, Bio-Protocol, 11, e3917, 10.21769/BioProtoc.3917 · DOI
- Wirth, 2020, Accelerated genome engineering of Pseudomonas putida by I-SceI-mediated recombination and CRISPR-Cas9 counterselection, Microb. Biotechnol., 13, 233, 10.1111/1751-7915.13396 · DOI
- Volke, 2020, Synthetic control of plasmid replication enables target- and self-curing of vectors and expedites genome engineering of Pseudomonas putida, Metab. Eng. Commun., 10, e00126, 10.1016/j.mec.2020.e00126 · DOI
- Ruiz, 2006, dye (arc) Mutants: insights into an unexplained phenotype and its suppression by the synthesis of poly(3-hydroxybutyrate) in Escherichia coli recombinants, FEMS Microbiol. Lett., 258, 55, 10.1111/j.1574-6968.2006.00196.x · DOI
- Zhao, 2012, Insights into fluorometabolite biosynthesis in Streptomyces cattleya DSM46488 through genome sequence and knockout mutants, Bioorg. Chem., 44, 1, 10.1016/j.bioorg.2012.06.002 · DOI · Paper page
- Swain, 2016, Inferring time derivatives including cell growth rates using Gaussian processes, Nat. Commun., 7, 13766, 10.1038/ncomms13766 · DOI
- Salis, 2009, Automated design of synthetic ribosome binding sites to control protein expression, Nat. Biotechnol., 27, 946, 10.1038/nbt.1568 · DOI · Paper page
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Calero, P., Gurdo, N., & Nikel, P. I. (2022) · Environmental Microbiology · doi:10.1111/1462-2920.16110 · Cited by 56
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Metadata
- Authors
- Wirth, N. T., & Nikel, P. I.
- ORCID
- Wirth, Nicolas T.
- Venue
- Chem Catalysis
- Publisher
- Elsevier BV
- Published
- 2021-11
- Volume
- 1
- Issue
- 6
- Pages
- 1234-1259
- ISSN
- 2667-1093
- PMC
- PMC8711041
- Cited by
- 26
- References
- 2
- Language
- en
- Licence
- Funders
- Danish Ministry of Higher Education and Science Research and Innovation (8021-00039B)
- Danmarks Frie Forskningsfond
- Danmarks Tekniske Universitet
- Horizon 2020
- Novo Nordisk Fonden (NNF18OC0034818, NNF20CC0035580, NNF21OC0067996)
- H2020 (814418)
- Horizon 2020 Framework Programme
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