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Fecal IgA Levels Are Determined by Strain-Level Differences in Bacteroides ovatus and Are Modifiable by Gut Microbiota Manipulation
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Abstract
Fecal IgA production depends on colonization by a gut microbiota. However, the bacterial strains that drive gut IgA production remain largely unknown. Here, we assessed the IgA-inducing capacity of a diverse set of human gut microbial strains by monocolonizing mice with each strain. We identified Bacteroides ovatus as the species that best induced gut IgA production. However, this induction varied bimodally across different B. ovatus strains. The high IgA-inducing B. ovatus strains preferentially elicited more IgA production in the large intestine through the T cell-dependent B cell-activation pathway. Remarkably, a low-IgA phenotype in mice could be robustly and consistently converted into a high-IgA phenotype by transplanting a multiplex cocktail of high IgA-inducing B. ovatus strains but not individual ones. Our results highlight the critical importance of microbial strains in driving phenotype variation in the mucosal immune system and provide a strategy to robustly modify a gut immune phenotype, including IgA production.
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“There is now ample evidence that intraspecies variation of gut microbiota can substantially change their effect on hosts, first described for enteric pathogens (for example, Escherichia coli 56 ) but more recently demonstrated for immunomodulatory commensals 57,58 , providing further conceptual support for this notion.”
From A gut microbial signature for combination immune checkpoint blockade across cancer types (2024) · cites this paper as [57]
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Cites
Prokka: rapid prokaryotic genome annotation
Seemann, T. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu153 · Cited by 18,937
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823
Roary: rapid large-scale prokaryote pan genome analysis
Page, A. J., Cummins, C. A., Hunt, M., Wong, V. K., Reuter, S., Holden, M. T. G., Fookes, M., Falush, D., Keane, J. A., & Parkhill, J. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv421 · Cited by 5,736
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., Cheng, G., Yamasaki, S., Saito, T., Ohba, Y., et al. (2011) · Science · doi:10.1126/science.1198469 · Cited by 3,752
Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile
van Nood, E., Vrieze, A., Nieuwdorp, M., Fuentes, S., Zoetendal, E. G., de Vos, W. M., Visser, C. E., Kuijper, E. J., Bartelsman, J. F. W. M., Tijssen, J. G. P., et al. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1205037 · Cited by 3,708
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
Atarashi, K., Tanoue, T., Oshima, K., Suda, W., Nagano, Y., Nishikawa, H., Fukuda, S., Saito, T., Narushima, S., Hase, K., et al. (2013) · Nature · doi:10.1038/nature12331 · Cited by 2,872
Intestinal inflammation targets cancer-inducing activity of the microbiota
Arthur, J. C., Perez-Chanona, E., Mühlbauer, M., Tomkovich, S., Uronis, J. M., Fan, T.-J., Campbell, B. J., Abujamel, T., Dogan, B., Rogers, A. B., et al. (2012) · Science · doi:10.1126/science.1224820 · Cited by 2,263
Round, J. L., & Mazmanian, S. K. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909122107 · Cited by 2,233
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Han, Y., Liu, X., Jia, Q., Xu, J., Shi, J., Li, X., Xie, G., Zhao, X., & He, K. (2024) · Figshare · doi:10.6084/m9.figshare.26702572
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Karcher, N., Nigro, E., Punčochář, M., Blanco‐Míguez, A., Ciciani, M., Manghi, P., Zolfo, M., Cumbo, F., Manara, S., Golzato, D., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14984999
Karcher, N., Nigro, E., Punčochář, M., Blanco‐Míguez, A., Ciciani, M., Manghi, P., Zolfo, M., Cumbo, F., Manara, S., Golzato, D., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14985002
Han, Y., Liu, X., Jia, Q., Xu, J., Shi, J., Li, X., Xie, G., Zhao, X., & He, K. (2024) · Figshare · doi:10.6084/m9.figshare.26702575
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Wu, D., Li, F., Xiong, W., Huang, Z., Ma, K., Huang, J., Cai, S., Deng, J., Peng, J., Xia, X., et al. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2620128
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Voland, L. (2022) · theses.fr (ABES) · doi:10.70675/3d6ab2f6z3844z4eccz9cbazdd1ace927949
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Irie, K., Azuma, T., Minoshima, R., Mochida, Y., Yamada, R., Nanashima, K., Fuchida, S., Kubota, N., Tsukinoki, K., Sato, Y., et al. (2026) · Journal Of Clinical Periodontology · doi:10.1111/jcpe.70146
Oka, A., Bongers, G., Mishima, Y., Baltus, A. E., Gray, S. M., Liu, B., Herzog, J., Benedetto, J. R., Fan, T.-J., Jang, J., et al. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.08.003 · Cited by 1
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Gasanov, R. F., Emelina, D. A., Кравченко, И. В., Makarov, I. V., & Prokhorenko, E. S. (2026) · V M BEKHTEREV REVIEW OF PSYCHIATRY AND MEDICAL PSYCHOLOGY · doi:10.31363/2313-7053-2026-4-1302
Tang, W., Wang, Y., Feng, S., Li, J., Ni, Z., Tian, H., Mao, J., Ma, Y., Liu, C., Lv, X., et al. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.08.017
No strain, no gain: within-host bacterial microdiversity and human health
Wojtkowiak, A., Shinfuku, M. S., & Lewin, G. R. (2026) · Infection and Immunity · doi:10.1128/iai.00062-26
Ziyi, L., Yuan, Y., Hao, Q., Xia, L., An, X., Li, Z., Zhang, K., Yueqin, L., Zhang, Y., & Guo, Y. (2026) · Animals · doi:10.3390/ani16203256
Self-citationZhou, J.-A., Tu, J., Yue, J., Zhang, Q.-E., Chen, Y., Fan, Q., Ma, J., Zuo, Y., Liu, N.-N., Cheng, J., et al. (2026) · Immunity · doi:10.1016/j.immuni.2026.10.004
Metadata
- Authors
- Yang, C., Mogno, I., Contijoch, E. J., Borgerding, J. N., Aggarwala, V., Li, Z., Siu, S., Grasset, E. K., Helmus, D. S., Dubinsky, M. C., Mehandru, S., Cerutti, A., & Faith, J. J.
- Affiliations
- Icahn School of Medicine at Mount Sinai (US)
- Karolinska University Hospital (SE)
- Mount Sinai Hospital (US)
- Institució Catalana de Recerca i Estudis Avançats (ES)
- Corresponding author
- Faith, Jeremiah J.
- ORCID
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2020-03
- Volume
- 27
- Issue
- 3
- Pages
- 467-475.e6
- ISSN
- 1931-3128 (ISSN-L)
- PMC
- PMC7213796
- OpenAlex
- W3007217849
- Cited by
- 221
- References
- 78
- Citations by year
- 2026: 22 · 2025: 33 · 2024: 38 · 2023: 29 · 2022: 38 · 2021: 40 · 2020: 21
- FWCI
- 10.38
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell Host & Microbe (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Janssen Research and Development LLC
- National Institute of General Medical Sciences
- National Institute of Diabetes and Digestive and Kidney Diseases
- National Center for Complementary and Integrative Health
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Keywords
- fecal IgA, Bacteroides ovatus, strain-level diversity, gut microbiota, mucosal immunity, T cell-dependent B cell activation, microbial transplantation, large intestine
- MeSH terms
- Gastrointestinal Microbiome, Animals, B-Lymphocytes, Bacteroides, Feces, Germ-Free Life, Humans, Immunoglobulin A, Intestine, Large, Mice, Inbred C57BL, CD4-Positive T-Lymphocytes, Mice
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