The Ecology and Evolution of Pangenomes
Brockhurst, Michael A., Harrison, Ellie, Hall, James P.J., Richards, Thomas, McNally, Alan, MacLean, Craig·2019·Current Biology
Cited by (393)
Items 201–300 of 393
- Genomic Background Governs Opposing Responses to Nalidixic Acid upon Megaplasmid Acquisition in PseudomonasDavid A. Baltrus, Caitlin Smith, MacKenzie Derrick, Courtney Leligdon, Zoe Rosenthal, Madison Mollico, Andrew Moore, Meara Clark · 2021 · mSphere
- Comparative Genomics and Pathogenicity Analysis of Two Bacterial Symbionts of Entomopathogenic Nematodes: The Role of the GroEL Protein in VirulenceAbraham Rivera-Ramírez, Rosalba Salgado-Morales, Alfredo Jiménez‐Pérez, Rebeca Pérez-Martínez, Blanca I. García‐Gómez, Edgar Dantán‐González · 2022 · Microorganisms
- Comparison of Genomes, Resistomes, and Antimicrobial Properties of the Three Lactococcus lactis Strains from Fermented Milk and Cereal Products of South Africa and RussiaMoiseenko, K. V., Glazunova, O. A., Savinova, O. S., Fedorova, T. V. · 2024 · Applied Biochemistry and Microbiology
- Exploring and utilizing soil Microbiota: From dark to lightCaiyu Lu, Luotian Lu, Luyao Zhang, Huiyun Dong, Xingmei Liu, Bin Ma · 2025 · Earth Critical Zone
- Comparative Genomics Reveals Novel Species and Insights into the Biotechnological Potential, Virulence, and Resistance of AlcaligenesFrancisnei Pedrosa‐Silva, Thiago M. Venâncio · 2023 · Genes
- The evolutionary replacement of restriction-modification by Ssp antiviral systems is associated with the distribution of prophages in the major clonal group of Acinetobacter baumanniiAntonio Moreno-Rodríguez, Alejandro Rubio, Andrés Garzón, Younes Smani, Antonio J. Pérez‐Pulido · 2025 · mBio
- Population Genetic Structure: Where, What, and Why?Adomas Ragauskas, Evelina Maziliauskaitė, Petras Prakas, Dalius Butkauskas · 2025 · Diversity
- High-resolution profiling of bacterial and fungal communities using pangenome-informed taxon-specific long-read ampliconsLuzia Stalder, M. Maurhofer, Daniel Croll · 2025 · Microbiome
- Plasmid transmission dynamics and evolution of partner quality in a natural population of Rhizobium leguminosarumDavid Vereau Gorbitz, Chase Schwarz, John George McMullen, Mario A. Cerón-Romero, Rebecca T. Doyle, Jennifer A. Lau, Rachel J. Whitaker, Carin K. Vanderpool, Katy D. Heath · 2025 · mBio
- Genomic insights into the functional and metabolic versatility of gut microbiome Anaerostipes speciesDisha Bhattacharjee, Lindy Millman, Meagan L. Seesengood, Lindsey Martineau, Anna Maria Seekatz · 2026 · Microbial Genomics
- Regulatory features determine the evolutionary fate of laterally acquired genes in plantsCatherine F Collins, Benjamin T Alston, Samuel G. S. Hibdige, Pauline Raimondeau, Emily R Baker, Graciela Sotelo, Alexander S. T. Papadopulos, Pascal-Antoine Christin, Lara Pereira, Luke T. Dunning · 2026 · Molecular Biology and Evolution
- Beyond Adaptive Gene Transfers: A Primer on Horizontal Gene Transfer Across ScalesJulia Van Etten, Matthew D. Johnson · 2026 · Integrative and Comparative Biology
- Multiple relaxases contribute to the horizontal transfer of the virulence plasmids from the tumorigenic bacterium Pseudomonas syringae pv. savastanoi NCPPB 3335Maite Añorga, Miriam Urriza, Cayo Ramos, Jesús Murillo · 2022 · Frontiers in Microbiology
- Global dominance of Haloquadratum walsbyi by a single genomovar with distinct gene content and viral cohorts from close relativesEsteban Bustos-Caparros, Tomeu Viver, Juan F. Gago, Juanita R. Avontuur, Souad Amiour, Bonnie K. Baxter, María Eugenia Llames, Mehmet Burçin Mutlu, Aharon Oren, Ana S. Ramírez et al. · 2025 · The ISME Journal
- Interplay of Various Evolutionary Modes in Genome Diversification and Adaptive Evolution of the Family SulfolobaceaeRachana Banerjee, Narendrakumar M. Chaudhari, Abhishake Lahiri, Anupam Gautam, Debaleena Bhowmik, Chitra Dutta, Sujay Chattopadhyay, Daniel H. Huson, Sandip Paul · 2021 · Frontiers in Microbiology
- Evolutionary Genomics of Marine Bacteria and ArchaeaCarolina A. Martínez-Gutiérrez, Frank O. Aylward · 2022 · The microbiomes of humans, animals, plants, and the environment
- Pangenomes reveal genomic signatures of microbial adaptation to experimental soil warmingMallory J. Choudoir, Achala Narayanan, Damayanti Rodriguez-Ramos, Rachel Simoes, Alon Efroni, Abigail Sondrini, Kristen M. DeAngelis · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Kin Recognition Systems and Their Role in Multicellular BehaviorsKarina Yaniv, Karine A. Gibbs · 2025 · Annual Review of Microbiology
- Pangenomes as a framework for adaptive radiation, speciation, and adaptationNicolò Tellini, Ole K. Tørresen, David Edwards, Loren H. Rieseberg, Kjetill S. Jakobsen, José Cerca · 2025 · American Journal of Botany
- Genomic and Metabolomic Insights Into the Probiotic Potential of Weissella viridescensShuwei Zhang, Ruiting Lan, Ruiqing Zhao, Ruoshi Wang, Liyun Liu, Jianguo Xu · 2025 · Biology
- Population-scale long-read DNA sequencing: peering under the hood of the new evolutionary genomicsScott V. Edwards, Heng Li · 2026 · Proceedings of the Royal Society B Biological Sciences
- A universal and constant rate of gene content change traces pangenome flux to LUCAKatharina Trost, Michael R. Knopp, Jessica L. E. Wimmer, Fernando D. K. Tria, William F. Martin · 2024 · FEMS Microbiology Letters
- Navigating Host Immunity and Concurrent Ozone Stress: Strain‐Resolved Metagenomics Reveals Maintenance of Intraspecific Diversity and Genetic Variation in Xanthomonas on PepperAmanpreet Kaur, Ivory Russell, Ranlin Liu, Auston Holland, Rishi Bhandari, Neha Potnis · 2025 · Evolutionary Applications
- Fitness costs of plasmids carrying antibiotic resistance genesYi Xu, Hao Cheng, Xiaojie Hu, Chao QIN, Yanzheng Gao · 2025 · Scientia Sinica Technologica
- Comparative Genomics Reveals Intra and Inter Species Variation in the Pathogenic Fungus Batrachochytrium dendrobatidisMark N. Yacoub, Jason Stajich · 2025 · Genome Biology and Evolution
- A tri-tuple coordinate system derived for fast and accurate analysis of the colored de Bruijn graph-based pangenomesJindan Guo, Erli Pang, Hongtao Song, Kui Lin · 2021 · BMC Bioinformatics
- Plasmid evolution in the clinicRosanna C. T. Wright, Michael A. Brockhurst · 2022 · Nature Ecology & Evolution
- The contours of evolution: In defence of Darwin's tree of life paradigmPeter T. S. van der Gulik, Wouter D. Hoff, Dave Speijer · 2024 · BioEssays
- Integration of diverse DNA substrates by a casposase can be targeted to R-loops in vitro by its fusion to Cas9Chun Hang Lau, Edward L. Bolt · 2020 · Bioscience Reports
- Epistasis decreases with increasing antibiotic pressure but not temperatureAna‐Hermina Ghenu, André Amado, Isabel Gordo, Claudia Bank · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Redefining paradigms in the archaeal virus-host arms raceLaura Martínez-Álvarez, Xu Peng · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Cofitness network connectivity determines a fuzzy essential zone in open bacterial pangenomePan Zhang, Biliang Zhang, Yuanyuan Ji, Jian Jiao, Ziding Zhang, Chang Fu Tian · 2024 · mLife
- A genome-wide investigation of Mycoplasma hominis genes associated with gynecological infections or infertilitySalim Chibani, Elhem Yacoub, Safa Boujemaa, Helmi Mardassi, Julien Guglielmini, Amaury Vaysse, Nadine Khadraoui, Béhija Mlik, Boutheina Ben Abdelmoumen Mardassi · 2025 · Frontiers in Microbiology
- Harnessing genomic insights to identify antimicrobial traits in Bacillus velezensis MJ06 from Korean soybean-fermented MejuYeajin Song, Eunhye Jo, Min-Jeong Kim, Hyeyoung Lee, Jaeho Cha · 2025 · Food Science and Biotechnology
- Advances of Chinese herbal medicine and its active ingredients in the treatment of antibiotic-resistant Klebsiella pneumoniae infections: Therapeutic efficacy, mechanisms, and combination strategiesShuo Yang, Ping Su, Shuang Liu, Yi Wang · 2025 · Science of Traditional Chinese Medicine
- Multi-omics analysis reveals important role for microbial-derived metabolites from Botryllus schlosseri in metal interactionsDulce G. Guillén Matus, Caroline M. Donaghy, Nidhi Vijayan, Zachary T. Lane, Matthew Howell, George G. Glavin, Alfredo Milton Angeles-Boza, Spencer V. Nyholm, Marcy J. Balunas · 2025 · mSystems
- Bacterial immune systems as causes and consequences of microbiome structureRafael Custódio, Ellinor Alseth, Michael A. Brockhurst, Sam P. Brown, Edze Rients Westra · 2025 · PLoS Biology
- Diversity and evolution of archaeal immune strategiesLaura Martínez-Álvarez, Xu Peng · 2026 · Nucleic Acids Research
- Multi-scale ecological drivers shape the genome flexibility of soil-dwelling Listeria monocytogenesYing‐Xian Goh, FNU Hardeep, Hailong Zhang, Jingqiu Liao · 2026 · ISME Communications
- Antimicrobial resistance and the human gut microbiome—a food safety perspectiveCarmen Diaz‐Amigo, Leticia Elisa Bartolomé Del Pino, Jeffrey Lejeune, Jorge Pinto Ferreira, Catherine Bessy · 2026 · Critical Reviews in Food Science and Nutrition
- Plant pan-transcriptomics: Integrating structural genomics, isoform diversity, and systems genetics for next-generation breedingBahman Panahi, Rasmieh Hamid, Zahra Ghorbanzadeh · 2026 · Current Plant Biology
- Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathwaysMaëlle Zonnequin, Arnaud Belcour, Ludovic Delage, Anne Siegel, Samuel Blanquart, Catherine Leblanc, Gabriel V. Markov · 2024 · Frontiers in Plant Science
- Screening Marine Microbial Metabolites as Promising Inhibitors of Borrelia garinii: A Structural Docking Approach towards Developing Novel Lyme Disease TreatmentZarrin Basharat, Sadia Sattar, Ammar Abdulraheem Bahauddin, Abdulaziz K. Al Mouslem, Ghallab Alotaibi · 2024 · BioMed Research International
- Multivariate Divergence in Wild Microbes: No Evidence for Evolution along a Genetic Line of Least ResistanceEmile Gluck‐Thaler, Muhammad Shaikh, Corlett W. Wood · 2024 · The American Naturalist
- Copper homeostasis in Streptococcus and Neisseria: Known knowns and unknown knownsArchie Howell, Safa Chogule, Karrera Y. Djoko · 2025 · Advances in microbial physiology/Advances in Microbial Physiology
- A Small RNA Derived From the 5′ End of the IS 200 tnpA Transcript Regulates Multiple Virulence Regulons in Salmonella typhimuriumRyan S. Trussler, Naomi‐Jean Q. Scherba, Hoda Kooshapour, Michael J. Ellis, Konrad U. Förstner, Matthew Albert, Alexander J. Westermann, David B. Haniford · 2025 · Molecular Microbiology
- Gene co-occurrence and its association with phage infectivity in bacterial pangenomesAnne Kupczok, Athina Gavriilidou, Emilian Paulitz, Lucía Guerrero-García, Franz Baumdicker · 2025 · Philosophical Transactions of the Royal Society B Biological Sciences
- Origins and evolution of biological noveltyKelly A. Carscadden, Rebecca T. Batstone, Frances E. Hauser · 2022
- Pangenome evolution in Escherichia coli is sequence type, not phylogroup, specificElizabeth Cummins, Rebecca J Hall, Christopher H. Connor, James O. McInerney, Alan McNally · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Genomic Distance-based Rapid Uncovering of Microbial Population Structures (GRUMPS): a reference free genomic data cleaning methodologyKaleb Z. Abram, Zulema Udaondo, Michael Scott Robeson, Se‐Ran Jun · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Origins and Evolution of Novel Bacteroides in Captive ApesAlex H. Nishida, Howard Ochman · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Defense systems and horizontal gene transfer in bacteriaRoman Kogay, Yuri I. Wolf, Eugene V. Koonin · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Evolutionary dynamics of genome structure and content among closely related bacteriaMarco Molari, Liam P. Shaw, Richard A. Neher · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Negative frequency-dependent selection contributes to modular structure of effector repertoires in Pseudomonas syringaeShuanger Li, Eric Laderman, Hanna Märkle, Yunze Yang, Joy M. Bergelson, Mercedes Pascual · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific regions of differenceMahboobeh Behruznia, Maximillian G. Marin, Daniel James Whiley, Maha Reda Farhat, Jonathan C. Thomas, Maria Rosa Domingo-Sananes, Conor Joseph Meehan · 2025 · eLife
- Novel genes arise from genomic deletions across the bacterial tree of lifeArya Kaul, Fernando W. Rossine, Karel Břinda, Michael Baym · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Women's health is a team effort: probiogenomics supports the development of a multi-species vaginal probioticCalvanese, Chiara Maria, Valentino, Vincenzo, De Prisco, Annachiara, Allesina, Serena, Amoruso, Angela, Deidda, Francesca, Visciglia, Annalisa, Ercolini, Danilo, Pane, Marco, De Filippis, Francesca · 2026 · Cellular and Molecular Life Sciences
- Influence of genomic variations on glanders serodiagnostic antigens using integrative genomic and transcriptomic approachesPhilippe Charron, Ruimin Gao, John Chmara, Emily Hoover, Susan A. Nadin‐Davis, Danielle Chauvin, Jennifer Hazelwood, Kennedy J Makondo, Marc‐Olivier Duceppe, Mingsong Kang · 2023 · Frontiers in Veterinary Science
- Thanos: An R Package for the Gene-Centric Analysis of Functional Potential in Metagenomic SamplesZhe Zhao, Federico Marotta, Min Wu · 2024 · Microorganisms
- Comparative Pan- and Phylo-Genomic Analysis of Ideonella and Thermobifida Strains: Dissemination of Biodegradation Potential and Genomic DivergenceArockiyajainmary Michealsamy, Saranya Jayapalan · 2025 · Biochemical Genetics
- Genomic Markers Distinguishing Shiga Toxin-Producing Escherichia coli: Insights from Pangenome and Phylogenomic AnalysesAsmaa Elrefaey, Kingsley E. Bentum, Emmanuel Kuufire, Tyric James, Rejoice Nyarku, Viona Osei, Yilkal Asfaw Woube, Temesgen Samuel, Woubit Abebe · 2025 · Pathogens
- A comprehensive pangenome approach to exploring the probiotic potential of Weissella confusaMd. Saddam Hossain, Shanjana Rahman Tuli, Nigar Fatima, Sobur Ali, Shovan Basak Moon, Abu Hashem · 2025 · The Microbe
- Comprehensive Phylogenomic Analyses Support the Reclassification of Multiple Bacteroides SpeciesNawel Zaatout, Taha Menasria, Mabrouka Benhadj · 2025 · Current Microbiology
- Genomic comparative analysis of Bradyrhizobium elkanii strains: Exploring the diversity of nod factorsIgor Daniel Alves Ribeiro, Anderson José Scherer, Manuel Megı́as, Francisco Javier Ollero, Luciane Maria Pereira Passaglia · 2026 · Rhizosphere
- The evolutionary genomics of novel endosymbiosis in wild rhizobia bacteriaAngeliqua P. Montoya, Kyson T. Jensen, Joel S. Griffitts, Stephanie S. Porter · 2026 · Current Biology
- Metabolic diversity of Paenibacillus: Pan-genome insights on carbohydrate-active enzymes and biosynthetic gene clustersMuhammad Irfanul Islam, Md. Samrat Mohay Menul Islam, Hajara Akhter, Sumaiya Islam Chowdhury, Mohammed Ayaz, Md Murshed Hasan Sarkar, Saiful Islam · 2026 · The Microbe
- Comparative genomic analysis of Bacteroides fragilis from intestinal and extra-intestinal sitesRenee E. Oles, Marvic Carrillo Terrazas, Luke R. Loomis, Simone Zuffa, Maxwell Neal, Chia-Yun Hsu, Adriana Vasquez Ayala, Caitlin Tribelhorn, Pedro Belda‐Ferre, Jianshu Zhao et al. · 2026 · Microbiology Spectrum
- How the social lives of bacteria affect their pangenomeFiona Whelan · 2026 · Essays in Biochemistry
- Genomics and Molecular Phylogenetics Tree Analysis of Actinopolyspora IraqiensisTalal S. Salih, Raghad Riyadh Shafeek · 2021 · Ibn AL- Haitham Journal For Pure and Applied Science
- First Record of the Rare Species Aeromonas lusitana from Rainbow Trout (Oncorhynchus mykiss, Walbaum): Comparative Analysis with the Existing StrainsAna Fernández-Bravo, Vicente Vega-Sánchez, Alba Pérez‐Cataluña, Fadua Latif-Eugenín, Roxana Beaz‐Hidalgo, Antonio Martı́nez-Murcia, Edgardo Soriano‐Vargas, Omar Alejandro Cabrero-Martínez, Graciela Castro‐Escarpulli, María José Figueras · 2022 · Pathogens
- Decoding Ecuadorian Mycobacterium tuberculosis Isolates: Unveiling Lineage-Associated Signatures in Beta-Lactamase Resistance via Pangenome AnalysisGabriel Morey-León G, Juan Carlos Fernández‐Cadena, Derly Andrade-Molina, Luisa Berná · 2025 · Biomedicines
- Seaside to Bedside: Assembly in Research for Emerging Human Fungal Pathogen Candida aurisHugh Gifford, Duncan Wilson, Johanna L. Rhodes, Rhys A. Farrer · 2025 · Methods in molecular biology
- Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSALucy A. Weinert · 2021 · Apollo (University of Cambridge)
- A non-adaptive demographic mechanism for genome expansion in StreptomycesMallory J. Choudoir, Marko J Järvenpää, Pekka Marttinen, Daniel H. Buckley · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- A systematic investigation of lactic acid bacteria-derived biosynthetic gene clusters reveals diverse antagonistic bacteriocins in the human microbiomeDengwei Zhang, Jian Zhang, Shanthini Kalimuthu, Jing Liu, Zhiman Song, Beibei He, Peiyan Cai, Zheng Zhong, Chenchen Feng, Prasanna Neelakantan et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Repeat sequences limit the effectiveness of LGT and favoured the evolution of meiotic sex in early eukaryotesMarco Colnaghi, Nick J. Lane, Andrew Pomiankowski · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Variation in the rate lateral gene transfers accumulate in a grass lineagePauline Raimondeau, Matheus E. Bianconi, Lara Pereira, Christian Parisod, Pascal‐Antoine Christin, Luke T. Dunning · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- High-resolution profiling of bacterial and fungal communities using pangenome-informed taxon-specific long-read ampliconsLuzia Stalder, M. Maurhofer, Daniel Croll · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Genomic sequencing should extend to diverse priority pathogens for effective study and surveillance of antimicrobial resistance: a systematic review of whole-genome sequencing studies from IndiaNazneen Gheewalla, Jaisri Jagannadham, Rintu Kutum, Shraddha Madhav Karve · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- How to measure bacterial genome plasticity? A novel time-integrated index helps gather insights on pathogensGreta Bellinzona, Gherard Batisti Biffignandi, Fausto Baldanti, Matteo Brilli, Davide Sassera, Stefano Gaiarsa · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Emergence of alternative stable states in microbial communities undergoing horizontal gene transferJuken Hong, Wenzhi Xue, Teng Wang · 2025 · eLife
- Disentangling the impacts of abiotic and biotic environmental factors and dispersal dynamics on the pangenome fluidity of bacterial pathogensYing‐Xian Goh, FNU Hardeep, Hailong Zhang, Jingqiu Liao · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- The information content of species: formal definitions of pangenome complexity track with bacterial lifestyleApurva Narechania, Dean Bobo, Marcus Thomas P. Gilbert, Shyam Gopalakrishnan · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Redefining paradigms in the archaeal virus-host arms raceLaura Martínez-Álvarez, Xu Peng · 2025 · Research Square
- Corn rust population genomics reveals a cryptic virulent group and adaptive effectoromeYuanjie Li, Peng Zhao, Xiufeng Liu, Clement K. M. Tsui, Daniel Croll, Junmin Liang, Lei Cai · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Endemic dark ocean microbiomes drive carbon cycling in the Southern OceanThulani Peter Makhalanyane, Oliver K. I. Bezuidt, Diego Castillo, Tiffany du Plessis, Marike Palmer, Philip Hugenholtz · 2025 · Research Square
- Mobile genetic elements shape the evolution of wild bacterial pangenomes in the face of biotic and abiotic selective pressures in the soilAngeliqua P. Montoya, Hanna Kehlet-Delgado, Kyson T. Jensen, Joel S. Griffitts, Stephanie S. Porter · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- The pangenome of Aspergillus fumigatus highlights the dynamics of gene gain-loss over evolutionary timescales in a human fungal pathogenHarry Chown, Johanna L. Rhodes, Matthew C Fisher (17773886), Michael Bromley · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Species-specific transformer models of bacterial gene order and content for genomic surveillance tasksSamuel Horsfield, Maciej Wiatrak, James O. McInerney, Stephen D. Bentley, Caroline Colijn, John A. Lees · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Comparative Genomic Insights into Pangenome Diversity and Functional Adaptation of Akkermansia and Faecalibacterium as Gut-Associated Next-Generation Probiotics: A Systematic ReviewArlan, La, Lestari, Rani Dwi, Israyusnita, Fami, Kotala, Sarmawaty, Adi, Noval Wahyu, Sari, Dewi Firda, Hanifah, Zuraidah, Rudiansyah, Rudiansyah, Khasanah, Fazrina, Tukan, Fenty Florentina D. L. et al. · 2026 · F1000Research
- Self-organisation and persistence of antibiotic resistance in evolving plasmid communitiesMartin Zwanzig, Uta Berger · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Limited and strain-specific transcriptional and growth responses to acquisition of a multidrug resistance plasmid in genetically diverse Escherichia coli lineagesSteven J. Dunn, Laura Carrilero, Michael A. Brockhurst, Alan McNally · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSAMarta Matuszewska, Gemma G. R. Murray, Xiaoliang Ba, Rhiannon Wood, Mark A. Holmes, Lucy A. Weinert · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Comparative genomics of Xylella fastidiosa suggests determinants of host-specificity and expands its mobile genetic elements repertoireGuillermo Uceda-Campos, Oseias Rodrigues Feitosa-Junior, Caio R. N. Santiago, Paulo Marques Pierry, Paulo A. Zaini, Wesley Oliveira de Santana, Joaquim Martins, Deibs Barbosa, Luciano Antônio Digiampietri, João Carlos Setúbal et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Faculty Opinions recommendation of Unbiased homeologous recombination during pneumococcal transformation allows for multiple chromosomal integration events.David S. Stephens, Yih‐Ling Tzeng · 2021 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Comparative genomics support reduced-genome Paraburkholderia symbionts of Dictyostelium discoideum amoebas are ancestrally adapted professional symbiontsSuegene Noh, Benjamin J. Capodanno, Songtao Xu, Marisa C. Hamilton, Joan E. Strassmann, David C. Queller · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Soil microbial dark matter explored from genome-resolved metagenomicsBin Ma, Caiyu Lu, Yiling Wang, Jingwen Yu, Kankan Zhao, Ran Xue, Xiaofei Lv, Ronghui Pan, Jiabao Zhang, Yong‐Guan Zhu et al. · 2023 · Research Square
- Co-fitness network connectivity determines a fuzzy essential zone in Sinorhizobium of canonical open pangenomePan Zhang, Biliang Zhang, Yuanyuan Ji, Jian Jiao, Ziding Zhang, Chang Fu Tian · 2023 · Research Square
- Additional file 1 of A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiomeDengwei Zhang, Jian Zhang, Shanthini Kalimuthu, Liu, Jing, Zhi‐Man Song, He, Bei-bei, Peiyan Cai, Zheng Zhong, Chenchen Feng, Prasanna Neelakantan et al. · 2023 · Figshare
- Additional file 1 of Drivers of methicillin-resistant Staphylococcus aureus (MRSA) lineage replacement in ChinaHongbin Chen, Yuyao Yin, Lucy van Dorp, Liam P. Shaw, Gao, Hua, Mislav Acman, Jizhen Yuan, Fengning Chen, Shijun Sun, Xiaojuan Wang et al. · 2021 · Figshare