The Ecology and Evolution of Pangenomes

Brockhurst, Michael A., Harrison, Ellie, Hall, James P.J., Richards, Thomas, McNally, Alan, MacLean, Craig·2019·Current Biology

DOI 10.1016/j.cub.2019.08.012

Cited by (393)

Items 101–200 of 393

Ecology and evolution of chlamydial symbionts of arthropods
Tamara Halter, Stephan Köstlbacher, Astrid Collingro, Barbara Susanne Sixt, Elena Rebecca Toenshoff, Frederik Hendrickx, Rok Kostanjšek, Matthias Horn · 2022 · ISME Communications
Diverse and specialized metabolic capabilities of microbes in oligotrophic built environments
Xinzhao Tong, Danli Luo, Marcus H. Y. Leung, Justin Y. Y. Lee, Zhiyong Shen, Wengyao Jiang, Christopher E. Mason, Patrick K. H. Lee · 2024 · Microbiome
Multi-Omics Approach Reveals the Potential Core Vaccine Targets for the Emerging Foodborne Pathogen Campylobacter jejuni
Hengchun Cao, Hanxiao Xu, Chunhui Ning, Xiang Li, Qiufang Ren, Tiantian Zhang, Yusen Zhang, Rui Gao · 2021 · Frontiers in Microbiology
Genome-wide association study of hemolytic uremic syndrome causing Shiga toxin-producing Escherichia coli from Sweden, 1994–2018
Andreas Matussek, Sara Mernelius, Milan Chromek, Ji Zhang, Anne Frykman, Sverker Hansson, Valya Georgieva, Yanwen Xiong, Xiangning Bai · 2023 · European Journal of Clinical Microbiology & Infectious Diseases
Pan-genome insights into adaptive evolution of bacterial symbionts in mixed host-microbe symbioses represented by human gut microbiota Bacteroides cellulosilyticus
Zhiqiu Yin, Jiaxin Liang, Mujie Zhang, Baozhu Chen, Zhanpeng Yu, Tian Xiaoyan, Xiaoyan Deng, Liang Peng · 2024 · The Science of The Total Environment
Transposon-sequencing across multiple Mycobacterium abscessus isolates reveals significant functional genomic diversity among strains
Chidiebere Akusobi, Sanjeevani Choudhery, Bouchra S. Benghomari, Ian D. Wolf, Shreya Singhvi, Thomas R. Ioerger, Eric J. Rubin · 2024 · mBio
Phylogenomic analysis of the Porphyromonas gingivalis - Porphyromonas gulae duo: approaches to the origin of periodontitis
Mauricio Morales-Olavarría, Josefa Nuñez-Belmar, Dámariz González, Emiliano Vicencio, Jaime Andrés Rivas‐Pardo, Cristian Cortéz, Juan Pablo Cárdenas · 2023 · Frontiers in Microbiology
Virulence and pangenome analysis of Vibrio harveyi strains from Greek and Red Sea marine aquaculture
Adriana Triga, Zeenat Atinuke Issa, Maria Smyrli, Linda Fenske, Pantelis Katharios · 2024 · Aquaculture
Comparative phylo-pangenomics reveals generalist lifestyles in representative Acinetobacter species and proposes candidate gene markers for species identification
Otávio Guilherme Gonçalves de Almeida, João Pedro Rueda Furlan, Eliana Guedes Stehling, Elaine Cristina Pereira De Martinis · 2021 · Gene
Reduced and Nonreduced Genomes in Paraburkholderia Symbionts of Social Amoebas
Suegene Noh, Benjamin J. Capodanno, Songtao Xu, Marisa C. Hamilton, Joan E. Strassmann, David C. Queller · 2022 · mSystems
Seasonal variation, virulence gene and antibiotic resistance of Vibrio in a semi-enclosed bay with mariculture (Dongshan Bay, Southern China)
Qiancheng Gao, Xiaowan Ma, Zhichao Wang, Haisheng Chen, Yu Luo, Bi Jin Wu, Shanni Qi, Miaozhen Lin, Jing Tian, Ying Qiao et al. · 2022 · Marine Pollution Bulletin
Coexistence of cry9 with the vip3A Gene in an Identical Plasmid of Bacillus thuringiensis Indicates Their Synergistic Insecticidal Toxicity
Zeyu Wang, Kui Wang, Alejandra Bravo, Mário Soberón, Jilin Cai, Changlong Shu, Jie Zhang · 2020 · Journal of Agricultural and Food Chemistry
Pangenomes: new tools for ecological and evolutionary genomics
Bohao Fang, Scott V. Edwards · 2025 · Trends in Ecology & Evolution
Genetic diversity of Leptospira isolates in Lao PDR and genome analysis of an outbreak strain
Linda Grillová, Matthew T. Robinson, Anisone Chanthongthip, Antony T. Vincent, Cecilia Nieves, Jan Oppelt, Jean-François Mariet, Céline Lorioux, Manivanh Vongsouvath, Mayfong Mayxay et al. · 2021 · PLoS neglected tropical diseases
Unraveling the genomic diversity and virulence of human fungal pathogens through pangenomics
Marion Perrier, Amelia E. Barber · 2024 · PLoS Pathogens
Unveiling intraspecific diversity and evolutionary dynamics of the foodborne pathogen Bacillus paranthracis through high-quality pan-genome analysis
Yuhui Du, Chengqian Qian, Xianxin Li, Xinqian Zheng, Shoucong Huang, Zhiqiu Yin, Tingjian Chen, Li Pan · 2024 · Current Research in Food Science
Pangenomic analysis of the bacterial cellulose-producing genera Komagataeibacter and Novacetimonas
Bashir Akhlaq Akhoon, Qi Qiao, Alexander A. Stewart, Jin Chen, Carlos Marcelino Rodriguez Lopez, Kendall R. Corbin · 2025 · International Journal of Biological Macromolecules
Bacterial dispersal and biogeography as underappreciated influences on phytobiomes
David A. Baltrus · 2020 · Current Opinion in Plant Biology
Orthology: Promises and Challenges
Yannis Nevers, Audrey Defosset, Odile Lecompte · 2020 · Springer eBooks
Evolutionary Divergence of Marinobacter Strains in Cryopeg Brines as Revealed by Pangenomics
Zachary S. Cooper, Josephine Z. Rapp, Anna Shoemaker, Rika E. Anderson, Zhi-Ping Zhong, Jody W. Deming · 2022 · Frontiers in Microbiology
Pangenome Evolution in Environmentally Transmitted Symbionts of Deep-Sea Mussels Is Governed by Vertical Inheritance
Devani Romero Picazo, Almut Werner, Tal Dagan, Anne Kupczok · 2022 · Genome Biology and Evolution
Epistasis decreases with increasing antibiotic pressure but not temperature
Ana‐Hermina Ghenu, André Amado, Isabel Gordo, Claudia Bank · 2023 · Philosophical Transactions of the Royal Society B Biological Sciences
Human Pangenomics: Promises and Challenges of a Distributed Genomic Reference
Paolo Abondio, Elisabetta Cilli, Donata Luiselli · 2023 · Life
Environmental Reservoirs, Genomic Epidemiology, and Mobile Genetic Elements
Thato Yoliswa Motlhalamme, Lynthia V. Paul, Vinayak Singh · 2024 · Springer eBooks
Pangenome analysis indicates evolutionary origins and genetic diversity: emphasis on the role of nodulation in symbiotic Bradyrhizobium
Leonardo Araújo Terra, Milena Serenato Klepa, Marco Antônio Nogueira, Mariangela Hungría · 2025 · Frontiers in Plant Science
Pangenomics of the Symbiotic Rhizobiales. Core and Accessory Functions Across a Group Endowed with High Levels of Genomic Plasticity
Riccardo Rosselli, Nicola La Porta, Rosella Muresu, Piergiorgio Stevanato, Giuseppe Concheri, Andrea Squartini · 2021 · Microorganisms
Rhizobiales -Specific RirA Represses a Naturally “Synthetic” Foreign Siderophore Gene Cluster To Maintain Sinorhizobium -Legume Mutualism
Kehan Liu, Biliang Zhang, Bo-Sen Yang, Wen-Tao Shi, Yufei Li, Wang Yin, Pan Zhang, Jian Jiao, Chang Fu Tian · 2022 · mBio
Repeat sequences limit the effectiveness of lateral gene transfer and favored the evolution of meiotic sex in early eukaryotes
Marco Colnaghi, Nick J. Lane, Andrew Pomiankowski · 2022 · Proceedings of the National Academy of Sciences
Comparative genomics of Salmonella enterica serovars Paratyphi A, Typhi and Typhimurium reveals distinct profiles of their pangenome, mobile genetic elements, antimicrobial resistance and defense systems repertoire
Charles Coluzzi, Bar Piscon, Sandra Dérozier, Hélène Chiapello, Ohad Gal‐Mor · 2025 · Virulence
Comparative genomic analysis of the Pediococcus genus reveals functional diversity for fermentation and probiotic applications
Nattarika Chaichana, Jirasa Boonsan, Thitaporn Dechathai, Sirikan Suwannasin, Kamonnut Singkhamanan, Monwadee Wonglapsuwan, Rattanaruji Pomwised, Komwit Surachat · 2025 · Computational and Structural Biotechnology Journal
Relevance of prokaryotic subspecies in the age of genomics
Stephanus N. Venter, Marike Palmer, Emma Theodora Steenkamp · 2022 · New Microbes and New Infections
Alternative Reading Frames are an Underappreciated Source of Protein Sequence Novelty
Zachary Ardern · 2023 · Journal of Molecular Evolution
Opportunities for Helicobacter pylori Eradication beyond Conventional Antibiotics
Camilia Metadea Aji Savitri, Kartika Afrida Fauzia, Ricky Indra Alfaray, Hafeza Aftab, Ari Fahrial Syam, Masrul Lubis, Yoshio Yamaoka, Muhammad Miftahussurur · 2024 · Microorganisms
A Campylobacter integrative and conjugative element with a CRISPR-Cas9 system targeting competing plasmids: a history of plasmid warfare?
Arnoud H. M. van Vliet, Oliver J. Charity, Mark Reuter · 2021 · Microbial Genomics
Signatures of selection in core and accessory genomes indicate different ecological drivers of diversification among Bacillus cereus clades
Hugh White, Michiel Vos, Samuel Keir Sheppard, Ben Pascoe, Ben Raymond · 2022 · Molecular Ecology
Sequence-based pangenomic core detection
Tizian Schulz, Roland Wittler, Jens Stoye · 2022 · iScience
Tackling the Pangenome Dilemma Requires the Concerted Analysis of Multiple Population Genetic Processes
Franz Baumdicker, Anne Kupczok · 2023 · Genome Biology and Evolution
The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific regions of difference
Mahboobeh Behruznia, Maximillian G. Marin, Daniel James Whiley, Maha Reda Farhat, Jonathan C. Thomas, Maria Rosa Domingo-Sananes, Conor Joseph Meehan · 2024 · eLife
Very early evolution from the perspective of microbial ecology
Aaron David Goldman, Betül Kaçar · 2022 · Environmental Microbiology
Pan-Chromosome and Comparative Analysis of Agrobacterium fabrum Reveal Important Traits Concerning the Genetic Diversity, Evolutionary Dynamics, and Niche Adaptation of the Species
Yuhui Du, Jinrong Zou, Zhiqiu Yin, Tingjian Chen · 2023 · Microbiology Spectrum
Integrated mass spectrometry-based multi-omics for elucidating mechanisms of bacterial virulence
Lok Man, William P. Klare, Ashleigh L. Dale, Joel A. Cain, Stuart J. Cordwell · 2021 · Biochemical Society Transactions
Whole genome sequencing and comparative genomic analyses of Planococcus alpniumensis MSAK28401T, a new species isolated from Antarctic krill
Yuanyuan Wang, Lingbo Ma, Jian Guo He, Zixuan Liu, Shaoping Weng, Lumin Wang, Jianguo He, Chang-Jun Guo · 2021 · BMC Microbiology
An integrated eco-evolutionary framework to predict population-level responses of climate-sensitive pathogens
Amy Marie Campbell, Chris Hauton, Craig Baker‐Austin, Ronny van Aerle, Jaime Martínez-Urtaza · 2023 · Current Opinion in Biotechnology
Compensatory mutations reducing the fitness cost of plasmid carriage occur in plant rhizosphere communities
Susannah M. Bird, Samuel Ford, Catriona M A Thompson, Richard Howard Little, James P. J. Hall, Robert Wilson Jackson, Jacob Malone, Ellie Harrison, Michael A. Brockhurst · 2023 · FEMS Microbiology Ecology
De novo genome assembly, inversion detection, and worldwide adaptation on the invasive species Styela plicata
Carles Galià‐Camps, Tilman Schell, Cinta Pegueroles, Damian Baranski, Alexander Ben Hamadou, Mathilde Horaud, Adrià Antich, Xavier Turón, Marta Pascual, Carola Greve et al. · 2025 · Scientific Reports
Genome Analysis of Endobacterium cerealis, a Novel Genus and Species Isolated from Zea mays Roots in North Spain
Esther Menéndez, José David Flores‐Félix, Martha-Helena Ramírez-Bahena, José Mariano Igual, Paula García‐Fraile, Álvaro Péix, Encarna Velázquez · 2020 · Microorganisms
Pangenome analyses of LuxS-coding genes and enzymatic repertoires in cocoa-related lactic acid bacteria
Otávio Guilherme Gonçalves de Almeida, Nicola Vitulo, Elaine Cristina Pereira De Martinis, Giovanna E. Felis · 2021 · Genomics
Naturally competent bacteria and their genetic parasites—a battle for control over horizontal gene transfer?
Nina Vesel, Eva Stare, Polonca Štefanič, Valentina A. Floccari, Ines Mandić-Mulec, Anna Dragoš · 2025 · FEMS Microbiology Reviews
Evolutionary and methodological considerations when interpreting gene presence–absence variation in pangenomes
Tomáš Brůna, Avinash Sreedasyam, Avril M. Harder, John T. Lovell · 2026 · NAR Genomics and Bioinformatics
Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing Escherichia coli O145:H28
Michelle Qiu Carter, Nicole S. Laniohan, Chien‐Chi Lo, Patrick Chain · 2022 · Microorganisms
Comparative genomics and phylogenomics of Campylobacter unveil potential novel species and provide insights into niche segregation
Sarah Henaut-Jacobs, Hemanoel Passarelli‐Araujo, Thiago M. Venâncio · 2023 · Molecular Phylogenetics and Evolution
Population genomics of diarrheagenic Escherichia coli uncovers high connectivity between urban and rural communities in Ecuador
Andrew P. Rothstein, Kelsey J. Jesser, Dorian J. Feistel, Konstantinos T. Konstantinidis, Gabriel A. Trueba, Karen Lévy · 2023 · Infection Genetics and Evolution
Adaptive radiations in natural populations of prokaryotes: innovation is key
Michiel Vos, Daniel Padfield, Christopher Quince, Rutger Aldo Vos · 2023 · FEMS Microbiology Ecology
Microbial Biodiversity in Groundwater Ecosystems
Clemens Karwautz, Christian Griebler · 2022 · Elsevier eBooks
Genomic evolution of Salmonella Dublin in cattle and humans in the United States
Sophia M. Kenney, Nkuchia M. M’ikanatha, Erika Ganda · 2025 · Applied and Environmental Microbiology
Alternative nitrogenase of Paenibacillus sonchi genomovar Riograndensis: An insight in the origin of Fe-nitrogenase in the Paenibacillaceae family
Igor Daniel Alves Ribeiro, Evelise Bach, Luciane Maria Pereira Passaglia · 2022 · Molecular Phylogenetics and Evolution
Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome
Jason C. Hyun, Bernhard Ørn Palsson · 2023 · Genome biology
Genomic Insights into Cyanide Biodegradation in the Pseudomonas Genus
Lara P. Sáez, Gema Rodríguez-Caballero, Alfonso Olaya‐Abril, Purificación Cabello, Conrado Moreno‐Vivián, María Dolores Roldán, Víctor M. Luque‐Almagro · 2024 · International Journal of Molecular Sciences
Biosynthetic gene cluster profiling from North Java Sea Virgibacillus salarius reveals hidden potential metabolites
Ocky Karna Radjasa, Ray Steven, Zalfa Humaira, Fenny Martha Dwivany, Husna Nugrahapraja, Joko Pebrianto Trinugroho, Tati Kristianti, Agus Chahyadi, Yosua Natanael, Neil Priharto et al. · 2023 · Scientific Reports
LoVis4u: Locus Visualisation tool for comparative genomics
Artyom A. Egorov, Gemma Catherine Atkinson · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Systematic annotation of hyper-variability hotspots in phage genomes and plasmids
Artyom A. Egorov, Vasili Hauryliuk, Gemma Catherine Atkinson · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Exploring Xenorhabdus and Photorhabdus Nematode Symbionts in Search of Novel Therapeutics
Ewa Sajnaga, Waldemar Kazimierczak, Magdalena Anna Karaś, Monika Elżbieta Jach · 2024 · Molecules
PanBGC: a pangenome-inspired framework for comparative analysis of biosynthetic gene clusters
Davide Paccagnella, Caner Bağcı, Athina Gavriilidou, Nadine Ziemert · 2025 · ISME Communications
Mechanisms of horizontal gene transfer and DNA recombination
Garry W. Blakely · 2024 · Elsevier eBooks
Horizontal Gene Transfer in Fungi and Its Ecological Importance
Carla Gonçalves, Chris Todd Hittinger, Antonis Rokas · 2024 · The mycota
Highly variable mitochondrial chromosome content in a holoparasitic plant due to recurrent gains of foreign circular DNA
Leonardo Martin Gatica‐Soria, M. Emilia Roulet, Walter Daniel Tulle, Héctor A. Sato, María Eugenia Barrandeguy, Maria Virginia Sanchez-Puerta · 2025 · Physiologia Plantarum
Whole-genome sequencing analysis of Shiga toxin-producing Escherichia coli O22:H8 isolated from cattle prediction pathogenesis and colonization factors and position in STEC universe phylogeny
Wanderson Marques da Silva, Mariano Larzábal, Flávia Figueira Aburjaile, Nahuel A. Riviere, Luisina Martorelli, James L. Bono, Ariel Amadío, Ángel Cataldi · 2022 · The Journal of Microbiology
Emergence of alternative stable states in microbial communities undergoing horizontal gene transfer
Juken Hong, Wenzhi Xue, Teng Wang · 2024 · eLife
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes
Marco Molari, Liam P. Shaw, Richard A. Neher · 2025 · Molecular Biology and Evolution
Chromosomal capture of beneficial genes drives plasmids toward ecological redundancy
R. Craig MacLean, Cédric Lood, Rachel M. Wheatley · 2025 · The ISME Journal
Importance of mobile genetic element immunity in numerically abundant Trichodesmium clades
Eric A. Webb, Noelle A. Held, Yiming Zhao, Elaina D. Graham, Asa E. Conover, Jake Semones, Michael Lee, Yuanyuan Feng, Fei‐Xue Fu, Mak A. Saito et al. · 2023 · ISME Communications
Preceding Host History of Conjugative Resistance Plasmids Affects Intra- and Interspecific Transfer Potential from Biofilm
Ilmur Jonsdottir, Cindy Given, Reetta K. Penttinen, Matti Jalasvuori · 2023 · mSphere
Functional Profiling and Evolutionary Analysis of a Marine Microalgal Virus Pangenome
Briallen Lobb, Anson Shapter, Andrew C. Doxey, Jozef I. Nissimov · 2023 · Viruses
A microbial perspective on speciation
Rike Stelkens · 2024 · Evolutionary Journal of the Linnean Society
Goldfinder : Unraveling Networks of Gene Co-occurrence and Avoidance in Bacterial Pangenomes
Gavriilidou, Athina, Paulitz, Emilian, Resl, Christian, Ziemert, Nadine, Kupczok, Anne, Baumdicker, Franz · 2024
The Mycobacterium tuberculosis complex pangenome is small and driven by sub-lineage-specific regions of difference
Mahboobeh Behruznia, Maximillian G. Marin, Maha Reda Farhat, Jonathan C. Thomas, Maria Rosa Domingo-Sananes, Conor Joseph Meehan · 2024 · eLife
Genome and pan-genome analysis of a new exopolysaccharide-producing bacterium Pyschrobacillus sp. isolated from iron ores deposit and insights into iron uptake
Afef Najjari, Marwa Jabberi, Saïda Fatma Chérif, Ameur Cherif, Hadda‐Imene Ouzari, Javier A. Linares‐Pastén, Haïtham Sghaier · 2024 · Frontiers in Microbiology
A pan-genome perspective on the evolutionary dynamics of polyphyly, virulence, and antibiotic resistance in Salmonella enterica serovar Mbandaka highlights emerging threats to public health and food safety posed by cloud gene families
Nai-peng Kan, Zhiqiu Yin, Yu-Feng Qiu, Enhui Zheng, Jianhui Chen, Jianzhong Huang, Yuhui Du · 2024 · Current Research in Food Science
Pangenomes suggest ecological-evolutionary responses to experimental soil warming
Mallory J. Choudoir, Achala Narayanan, Damayanti Rodriguez-Ramos, Rachel Simoes, Alon Efroni, Abigail Sondrini, Kristen M. DeAngelis · 2025 · mSphere
Heterogeneity in recombination rates and accessory gene co-occurrence distinguish Pseudomonas aeruginosa phylogroups
Samara T. Choudhury, Kathryn R. Piper, Manuela Montoya-Giraldo, Odion O. Ikhimiukor, Jeremy R. Dettman, Rees Kassen, Cheryl P. Andam · 2025 · mSystems
Pangenomic analysis of three putative hydrocarbon degrading genera Limnohabitans, Aquabacterium, and Novosphingobium collected from freshwater sources
Gurpreet Kharey, Vince P. Palace, Lyle G. Whyte, Charles W. Greer · 2025 · Genome
Effect of innovative mineral-organic mixtures on enzymatic activity, ecotoxicity, and microbial communities in contaminated soil
Renata Jarosz, Agnieszka Klimkowicz‐Pawlas, Karolina Biel, Jakub Mokrzycki, Marcin Musiałowski, Klaudia Dębiec-Andrzejewska, Monika Mierzwa–Hersztek · 2025 · Soil and Tillage Research
A species-wide inventory of receptor-like kinases in Arabidopsis thaliana
Zachary Kileeg, G. Adam Mott · 2025 · BMC Biology
Primulina pan-genome reveals differential gene retention following whole-genome duplications and provides insights into edaphic specialization
Chao Feng, Lihua Yang, Jing Wang, Xizuo Shi, Ming Kang · 2025 · Cell Reports
Genome-wide association and dissociation studies in Pantoea ananatis reveal potential virulence factors affecting Allium porrum and Allium fistulosum × Allium cepa hybrid
Brendon K. Myers, Gi Yoon Shin, Gaurav Agarwal, Shaun P. Stice, Ronald D. Gitaitis, Brian H. Kvitko, Bhabesh Dutta · 2023 · Frontiers in Microbiology
The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific regions of difference
Mahboobeh Behruznia, Maximillian G. Marin, Daniel James Whiley, Maha Reda Farhat, Jonathan C. Thomas, Maria Rosa Domingo-Sananes, Conor Joseph Meehan · 2025 · eLife
Comparative genomics reveals the evolution of antimicrobial resistance in Bacteroides nordii
Vikas Sharma, Anshul Sood, Pallab Ray, Archana Angrup · 2022 · Microbial Pathogenesis
Horizontal Gene Transfer of a key Translation Factor and its Role in Polyproline Proteome Evolution
Tess E. Brewer, Andreas Wagner · 2024 · Molecular Biology and Evolution
Gene loss and acquisition in lineages of bacteria evolving in a human host environment
Miglė Gabrielaitė, Helle Krogh Johansen, Søren Molin, Finn Cilius Nielsen, Rasmus L. Marvig · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
Unveiling plasmid diversity and functionality in pristine groundwater
Olga M. Pérez-Carrascal, Akbar Adjie Pratama, M. B. Sullivan, K. Küsel · 2025 · Environmental Microbiome
Phylogenomic and Pangenomic Assessment of a Mediterranean Strain of Raphidiopsis raciborskii Extends Knowledge of the Global Distribution and Characteristics of a Potentially Toxigenic Cyanobacterium
Nico Salmaso, Leonardo Cerasino, Margherita Di Brizio, Massimo Pindo, Adriano Boscaini · 2025 · Environmental Microbiology Reports
Mobilome-mediated transcriptional activation of biosynthetic gene clusters and its impact on strain competitiveness in food fermentation microbiomes
Lei Xu, Jian‐Yu Jiao, Chen Ling, Rubing Du, Qun Wu, Yan Xu, Wen-Jun Li · 2025 · Microbiome
Genome-wide co-occurrence patterns link mobile genetic elements, antimicrobial resistance and defense systems in Pseudomonas aeruginosa
Samara T. Choudhury, Cheryl P. Andam · 2026 · BMC Genomics
Pangenomics: A new era in the field of neurodegenerative diseases
Paolo Abondio, Francesco Bruno, Giuseppe Passarino, Alberto Montesanto, Donata Luiselli · 2023 · Ageing Research Reviews
Relating ecological diversity to genetic discontinuity across bacterial species
Hemanoel Passarelli‐Araujo, Thiago M. Venâncio, William Paul Hanage · 2025 · Genome biology
Genetic Transfer in Action: Uncovering DNA Flow in an Extremophilic Microbial Community
Julia Van Etten, Timothy G. Stephens, Debashish Bhattacharya · 2025 · Environmental Microbiology
Temperature-driven nitrogen mixotrophy shapes marine cyanobacteria Prochlorococcus and Synechococcus latitudinal distribution pattern
Buce Hetharua, Min Xu, Shan Sun, Kaidian Zhang, Huidan Yang, Hongbin Liu, Shuh‐Ji Kao · 2025 · Communications Earth & Environment
De novo virulence feature discovery and risk assessment in Klebsiella pneumoniae based on microbial genome vectorization
Kristen L. Beck, Akshay Agarwal, Alison Laufer Halpin, L. Clifford McDonald, Susannah L. McKay, Alyssa G. Kent, James H. Kaufman, Vandana V. Mukherjee, Christopher A. Elkins, Ed Seabolt · 2025 · Communications Biology
Bacterial plasmid-associated and chromosomal proteins have fundamentally different properties in protein interaction networks
Tim Downing, Alexander D. Rahm · 2022 · Scientific Reports
Transporter Proteins as Ecological Assets and Features of Microbial Eukaryotic Pangenomes
David S. Milner, Luis Javier Galindo, Nicholas A. T. Irwin, Thomas A. Richards · 2023 · Annual Review of Microbiology