Germ line polymorphisms of genes involved in pluripotency transcription factors predict efficacy of cetuximab in metastatic colorectal cancer
Open accessAbstract
Background Cancer stem cells (CSCs) are primarily maintained by a network of pluripotency transcription factors (PTFs). Given a close relationship of CSC regulation with epidermal growth factor receptor and vascular endothelial growth factor signalling, we investigated whether single-nucleotide polymorphisms (SNPs) in PTF genes are related to the efficacy of cetuximab and/or bevacizumab in patients with metastatic colorectal cancer (mCRC).Patients and methods Genomic and clinical data from three independent clinical trial cohorts were tested: cetuximab cohort (FOLFIRI/cetuximab arm in FIRE-3, n = 129), bevacizumab cohort 1 (FOLFIRI/bevacizumab arm in FIRE-3, n = 107) and bevacizumab cohort 2 (FOLFIRI/bevacizumab arm in TRIBE, n = 215). Genomic DNA extracted from blood samples was genotyped, and ten SNPs were tested for association with clinical outcomes.Results In the cetuximab cohort, four SNPs were significantly associated with progression-free survival in univariate analysis: NANOG rs11055767 (any A allele vs C/C, hazard ratio [HR] = 0.62, 95% confidence interval [CI] = 0.42-0.94, p = 0.02), NANOG rs10744044 (any A allele vs G/G, HR = 0.59, 95% CI = 0.39-0.90, p = 0.01), NANOGP8 rs2168958 (any C allele vs A/A, HR = 2.12, 95% CI = 1.36-3.29, p < 0.001) and NANOGP8 rs2279066 (any C allele vs T/T, HR = 1.80, 95% CI = 1.06-1.68, p = 0.03). Multivariate analysis confirmed the significant associations for NANOGP8 rs2168958 and NANOGP8 rs2279066. In either bevacizumab cohort, no significant associations were observed in univariate analysis.Conclusions Germ line polymorphisms in the PTF genes could be predictive markers for cetuximab in mCRC.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Single-nucleotide polymorphisms of PTFs were significantly associated with PFS of the cetuximab cohort in the FIRE-3 trial.
“Single-nucleotide polymorphisms of PTFs were significantly associated with PFS of the cetuximab cohort in the FIRE-3 trial [141].”
From Resistance to anti-EGFR therapies in metastatic colorectal cancer: underlying mechanisms and reversal strategies (2021) · cites this paper as [141]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Takahashi, K., & Yamanaka, S. (2006) · Cell · doi:10.1016/j.cell.2006.07.024 · Cited by 26,673 · see citing works
Induced Pluripotent Stem Cell Lines Derived from Human Somatic Cells
Yu, J., Vodyanik, M. A., Smuga-Otto, K., Antosiewicz-Bourget, J., Frane, J. L., Tian, S., Nie, J., Jonsdottir, G. A., Ruotti, V., Stewart, R., et al. (2007) · Science · doi:10.1126/science.1151526 · Cited by 10,310 · see citing works
The consensus molecular subtypes of colorectal cancer
Guinney, J., Dienstmann, R., Wang, X., de Reyniès, A., Schlicker, A., Soneson, C., Marisa, L., Roepman, P., Nyamundanda, G., Angelino, P., et al. (2015) · Nature Medicine · doi:10.1038/nm.3967 · Cited by 5,170 · see citing works
Hindorff, L. A., Sethupathy, P., Junkins, H. A., Ramos, E. M., Mehta, J. P., Collins, F. S., & Manolio, T. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0903103106 · Cited by 4,013 · see citing works
Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Maurano, M. T., Humbert, R., Rynes, E., Thurman, R. E., Haugen, E., Wang, H., Reynolds, A. P., Sandstrom, R., Qu, H., Brody, J., et al. (2012) · Science · doi:10.1126/science.1222794 · Cited by 3,716 · see citing works
Heinemann, V., von Weikersthal, L. F., Decker, T., Kiani, A., Vehling-Kaiser, U., Al-Batran, S.-E., Heintges, T., Lerchenmüller, C., Kahl, C., Seipelt, G., et al. (2014) · The Lancet Oncology · doi:10.1016/s1470-2045(14)70330-4 · Cited by 1,740 · see citing works
Self-citationTargeting Notch, Hedgehog, and Wnt pathways in cancer stem cells: clinical update
Takebe, N., Miele, L., Harris, P., Jeong, W., Bando, H., Kahn, M., Yang, S. X., & Ivy, S. P. (2015) · Nature Reviews Clinical Oncology · doi:10.1038/nrclinonc.2015.61 · Cited by 1,255 · see citing works
Initial Therapy with FOLFOXIRI and Bevacizumab for Metastatic Colorectal Cancer
Loupakis, F., Cremolini, C., Masi, G., Lonardi, S., Zagonel, V., Salvatore, L., Cortesi, E., Tomasello, G., Ronzoni, M., Spadi, R., et al. (2014) · New England Journal of Medicine · doi:10.1056/nejmoa1403108 · Cited by 1,062 · see citing works
Self-citationUnravelling cancer stem cell potential
Beck, B., & Blanpain, C. (2013) · Nature reviews. Cancer · doi:10.1038/nrc3597 · Cited by 895 · see citing works
Berger, M. F., Philippakis, A., Qureshi, A. M., He, F. S., Estep, P. W., & Bulyk, M. L. (2006) · Nature Biotechnology · doi:10.1038/nbt1246 · Cited by 685 · see citing works
Chiou, S., Wang, M., Chou, Y., Chen, C., Hong, C.-F., Hsieh, W.-J., Chang, H.-T., Chen, Y., Lin, T.-W., Hsu, H.-S., et al. (2010) · Cancer Research · doi:10.1158/0008-5472.can-10-2638 · Cited by 575 · see citing works
ENCODE Project Writes Eulogy for Junk DNA
Pennisi, E. (2012) · Science · doi:10.1126/science.337.6099.1159 · Cited by 546 · see citing works
Hypoxia inducible factors in cancer stem cells
Heddleston, J. M., Li, Z., Lathia, J. D., Bao, S., Hjelmeland, A. B., & Rich, J. N. (2010) · British Journal of Cancer · doi:10.1038/sj.bjc.6605551 · Cited by 453 · see citing works
Jackstadt, R., van Hooff, S. R., Leach, J. D. G., Cortés-Lavaud, X., Lohuis, J. O., Ridgway, R. A., Wouters, V. M., Roper, J., Kendall, T. J., Roxburgh, C. S. D., et al. (2019) · Cancer Cell · doi:10.1016/j.ccell.2019.08.003 · Cited by 427 · see citing works
Colorectal Cancer Stem Cells: From the Crypt to the Clinic
Zeuner, A., Todaro, M., Stassi, G., & Maria, R. D. (2014) · Cell stem cell · doi:10.1016/j.stem.2014.11.012 · Cited by 370 · see citing works
Sveen, A., Bruun, J., Eide, P. W., Eilertsen, I. A., Ramirez, L., Murumägi, A., Arjama, M., Danielsen, S. A., Kryeziu, K., Elez, E., et al. (2018) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-17-1234 · Cited by 256 · see citing works
Lenz, H.-J., Ou, F.-S., Venook, A. P., Hochster, H. S., Niedzwiecki, D., Goldberg, R. M., Mayer, R. J., Bertagnolli, M. M., Blanke, C. D., Zemla, T., et al. (2019) · Journal of Clinical Oncology · doi:10.1200/jco.18.02258 · Cited by 246 · see citing works
Self-citationStintzing, S., Wirapati, P., Lenz, H., Neureiter, D., von Weikersthal, L. F., Decker, T. W., Kiani, A., Kaiser, F., Al‐Batran, S., Heintges, T., et al. (2019) · Annals of Oncology · doi:10.1093/annonc/mdz387 · Cited by 196 · see citing works
Self-citationNanog signaling in cancer promotes stem-like phenotype and immune evasion
Noh, K. H., Kim, B. W., Song, K., Cho, H., Lee, Y. H., Kim, J. H., Chung, J., Kim, J., Hewitt, S. M., Seong, S., et al. (2012) · Journal of Clinical Investigation · doi:10.1172/jci64057 · Cited by 193 · see citing works
EGFR: An essential receptor tyrosine kinase-regulator of cancer stem cells
Talukdar, S., Emdad, L., Das, S. K., & Fisher, P. B. (2020) · Advances in cancer research · doi:10.1016/bs.acr.2020.04.003 · Cited by 165 · see citing works
Okita, A., Takahashi, S. I., Ouchi, K., Inoue, M., Watanabe, M., Endo, M., Honda, H., Yamada, Y., & Ishioka, C. (2018) · Oncotarget · doi:10.18632/oncotarget.24617 · Cited by 156 · see citing works
NANOG modulates stemness in human colorectal cancer
Zhang, J., Espinoza, L. A., Kinders, R. J., Lawrence, S. M., Pfister, T. D., Zhou, M., Veenstra, T. D., Thorgeirsson, S. S., & Jessup, J. M. (2012) · Oncogene · doi:10.1038/onc.2012.461 · Cited by 146 · see citing works
MET signaling in colon cancer stem-like cells blunts the therapeutic response to EGFR inhibitors.
Luraghi, P., Reato, G., Cipriano, E., Sassi, F., Orzan, F., Bigatto, V., De Bacco, F., Menietti, E., Han, M., Rideout, W. M., et al. (2014) · Cancer Research · doi:10.1158/0008-5472.can-13-2340-t · Cited by 146 · see citing works
Mooi, J. K., Wirapati, P., Asher, R., Lee, C. K., Savas, P. S., Price, T. J., Townsend, A. R., Hardingham, J. E., Buchanan, D. D., Williams, D., et al. (2018) · Annals of Oncology · doi:10.1093/annonc/mdy410 · Cited by 144 · see citing works
Booth, H. A. F., & Holland, P. W. H. (2004) · Genomics · doi:10.1016/j.ygeno.2004.02.014 · Cited by 132 · see citing works
Song, K., Oh, S. J., Kim, S., Cho, H., Lee, H.-J., Song, J. S., Chung, J., Cho, E., Lee, J., Jeon, S., et al. (2020) · Nature Communications · doi:10.1038/s41467-019-14259-y · Cited by 97 · see citing works
Concise Review: Contribution of Cancer Stem Cells to Neovascularization
Ping, Y., & Bian, X. (2011) · Stem Cells · doi:10.1002/stem.650 · Cited by 91 · see citing works
Induction of Cancer Stem Cell Properties in Colon Cancer Cells by Defined Factors
Oshima, N., Yamada, Y., Nagayama, S., Kawada, K., Hasegawa, S., Okabe, H., Sakai, Y., & Aoi, T. (2014) · PLoS ONE · doi:10.1371/journal.pone.0101735 · Cited by 84 · see citing works
EGF signalling pathway regulates colon cancer stem cell proliferation and apoptosis
Feng, Y., Dai, X., Li, X., Wang, H., Liu, J., Zhang, J., Du, Y., & Xia, L. (2012) · Cell Proliferation · doi:10.1111/j.1365-2184.2012.00837.x · Cited by 83 · see citing works
Targeting the Colorectal Cancer Stem Cell
Medema, J. P. (2017) · New England Journal of Medicine · doi:10.1056/nejmcibr1706541 · Cited by 63 · see citing works
Chruścik, A., Gopalan, V., & Lam, A. K.-Y. (2017) · European Journal of Cell Biology · doi:10.1016/j.ejcb.2017.11.001 · Cited by 51 · see citing works
Differential expression of nanog1 and nanogp8 in colon cancer cells
Ishiguro, T., Sato, A., Ohata, H., Sakai, H., Nakagama, H., & Okamoto, K. (2011) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2011.10.123 · Cited by 50 · see citing works
Kim, S., Cho, H., Hong, S.-O., Oh, S. J., Lee, H.-J., Cho, E., Woo, S. R., Song, J. S., Chung, J., Son, S. W., et al. (2020) · Autophagy · doi:10.1080/15548627.2020.1805214 · Cited by 49 · see citing works
Oliveras‐Ferraros, C., Vazquez‐Martin, A., Cufí, S., Queralt, B., Báez, L., Guardeño, R., Hernández‐Yagüe, X., Martin‐Castillo, B., Brunet, J., & Menendez, J. A. (2011) · Journal of Cellular Biochemistry · doi:10.1002/jcb.22952 · Cited by 47 · see citing works
Reprogramming activity of NANOGP8, a NANOG family member widely expressed in cancer
Palla, A. R., Piazzolla, D., Abad, M., Li, H., Domı́nguez, O., Schönthaler, H. B., Wagner, E. F., & Serrano, M. (2013) · Oncogene · doi:10.1038/onc.2013.196 · Cited by 46 · see citing works
Sunitinib but not VEGF blockade inhibits cancer stem cell endothelial differentiation
Brossa, A., Grange, C., Mancuso, L., Annaratone, L., Satolli, M. A., Mazzone, M., Camussi, G., & Bussolati, B. (2015) · Oncotarget · doi:10.18632/oncotarget.3123 · Cited by 35 · see citing works
Role of Mesenchymal Stem Cell-Derived Extracellular Vesicles in Epithelial–Mesenchymal Transition
Kletukhina, S. K., Neustroeva, O., James, V. H., Rizvanov, A. A., & Gomzikova, M. O. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20194813 · Cited by 33 · see citing works
Lenz, H., Argilés, G., Yoshino, T., Tejpar, S., Ciardiello, F., Braunger, J., Salnikov, A. V., Gabrielyan, O., Schmid, R., Höfler, J., et al. (2020) · Clinical Colorectal Cancer · doi:10.1016/j.clcc.2020.09.003 · Cited by 18 · see citing works
Self-citationPro‑metastatic signaling of the trans fatty acid elaidic acid is associated with lipid rafts
Kishi, S., Fujiwara‐Tani, R., Luo, Y., Kawahara, I., Goto, K., Fujii, K., Ohmori, H., Nakashima, C., Sasaki, T., & Kuniyasu, H. (2018) · Oncology Letters · doi:10.3892/ol.2018.7817 · Cited by 17 · see citing works
The Pluripotency Network in Colorectal Cancer Pathogenesis and Prognosis: an Update
Voutsadakis, I. A. (2018) · Biomarkers in Medicine · doi:10.2217/bmm-2017-0369 · Cited by 16 · see citing works
Ye, F., Gao, S., Gao, Y., Wang, X., & Chen, Z. (2016) · Oncotarget · doi:10.18632/oncotarget.13233 · Cited by 13 · see citing works
Angiogenesis inhibitors increase tumor stem cells
Chau, C. H., & Figg, W. D. (2012) · Cancer Biology & Therapy · doi:10.4161/cbt.19852 · Cited by 12 · see citing works
Molecular subtype assay to reveal anti-EGFR response sub-clones in colorectal cancer (CRC).
Fontana, E., Nyamundanda, G., Cunningham, D., Ragulan, C., Sclafani, F., Eason, K., Bali, M. A., Vendrell, I., Patil, Y., Wilson, S. H., et al. (2018) · Journal of Clinical Oncology · doi:10.1200/jco.2018.36.4_suppl.658 · Cited by 9 · see citing works
Yuki, S., Gamoh, M., Denda, T., Takashima, A., Takahashi, S. I., Nakamura, M., Ohori, H., Yamaguchi, T., Kobayashi, Y., Baba, H., et al. (2020) · Journal of Clinical Oncology · doi:10.1200/jco.2020.38.4_suppl.169 · Cited by 5 · see citing works
Flagged first, then by citations
1 of the 45 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Zhou, J., Ji, Q., & Li, Q. (2021) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-021-02130-2 · Cited by 246 · see citing works
Qu, N., Li, Z., Wei, J., Yang, Y., Meng, Y., & Gao, Y. (2024) · International Immunopharmacology · doi:10.1016/j.intimp.2024.113736 · Cited by 4 · see citing works
- Authors
- Arai, H., Millstein, J., Loupakis, F., Stintzing, S., Wang, J., Battaglin, F., Kawanishi, N., Jayachandran, P., Soni, S., Zhang, W., Mumenthaler, S. M., Cremolini, C., Heinemann, V., Falcone, A., & Lenz, H.-J.
- Affiliations
- University of Southern California (US)
- Istituto Oncologico Veneto (IT)
- Stiftung Charité (DE)
- University of Pisa (IT)
- LMU Klinikum (DE)
- Corresponding author
- Lenz, Heinz-Josef
- ORCID
- Venue
- European Journal of Cancer
- Publisher
- Elsevier BV
- Published
- 2021-06
- Volume
- 150
- Pages
- 133-142
- ISSN
- 0959-8049 (ISSN-L)
- PMC
- PMC12047410
- OpenAlex
- W3157337076
- Cited by
- 2
- References
- 45
- Citations by year
- 2024: 1 · 2021: 1
- FWCI
- 0.18
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- European Journal of Cancer (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- CINECA IRIS Institutial research information system (University of Pisa) (submittedVersion)
- Funders
- National Cancer Institute
- Topics
- Health Sciences › Medicine › Oncology › Colorectal Cancer Treatments and Studies
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Health Sciences › Medicine › Oncology › Cancer Cells and Metastasis
- Keywords
- metastatic colorectal cancer, cetuximab, bevacizumab, single nucleotide polymorphisms, pluripotency transcription factors, cancer stem cells, Nanog, progression-free survival, predictive biomarkers, epidermal growth factor receptor, vascular endothelial growth factor, FOLFIRI, FIRE-3 trial, TRIBE trial
- MeSH terms
- Bevacizumab, Cetuximab, Nanog Homeobox Protein, Antineoplastic Agents, Immunological, Progression-Free Survival, Antineoplastic Combined Chemotherapy Protocols, Humans, Neoplasm Metastasis, Phenotype, Retrospective Studies, Time Factors, Biomarkers, Tumor, Neoplastic Stem Cells, Colorectal Neoplasms, Randomized Controlled Trials as Topic, Clinical Trials, Phase III as Topic, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review