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GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
Open accessAbstract
The immense growth in the volume of research literature and experimental data in the field of molecular biology calls for efficient automatic methods to capture and store information. In recent years, several groups have worked on specific problems in this area, such as automated selection of articles pertinent to molecular biology, or automated extraction of information using natural-language processing, information visualization, and generation of specialized knowledge bases for molecular biology. GeneWays is an integrated system that combines several such subtasks. It analyzes interactions between molecular substances, drawing on multiple sources of information to infer a consensus view of molecular networks. GeneWays is designed as an open platform, allowing researchers to query, review, and critique stored information.
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Citations
Cited by
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Wu, G., Feng, X., & Stein, L. (2010) · Genome Biology · doi:10.1186/gb-2010-11-5-r53 · Cited by 692
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Jensen, L. J., Saric, J., & Bork, P. (2006) · Nature Reviews Genetics · doi:10.1038/nrg1768 · Cited by 631
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Metadata
- Authors
- Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboué, P. A., Weng, W., Wilbur, W. J., Hatzivassiloglou, V., & Friedman, C.
- Venue
- Journal of Biomedical Informatics
- Publisher
- Elsevier BV
- Published
- 2004-02
- Volume
- 37
- Issue
- 1
- Pages
- 43-53
- ISSN
- 1532-0464 (ISSN-L)
- OpenAlex
- W2137881949
- Cited by
- 291
- References
- 0
- FWCI
- 6.76
- Type
- journal article
- Language
- en
- Open access
- bronze
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- CoChat. (2026). Citation check: GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. https://app.cochat.ai/papers/10.1016/j.jbi.2003.10.001
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- Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboué, P. A., Weng, W., Wilbur, W. J., Hatzivassiloglou, V., & Friedman, C. (2004). GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. Journal of Biomedical Informatics. https://doi.org/10.1016/j.jbi.2003.10.001
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
