Cited by 89

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Proteomics identifies the composition and manufacturing recipe of the 2500-year old sourdough bread from Subeixi cemetery in China

Shevchenko, Anna, Yang, Yimin, Knaust, Andrea, Thomas, Henrik, Jiang, Hongen, Lu, Enguo, Wang, Changsui, Shevchenko, Andrej·2014·Journal of Proteomics

Abstract

We report on the geLC-MS/MS proteomics analysis of cereals and cereal food excavated in Subeixi cemetery (500-300BC) in Xinjiang, China. Proteomics provided direct evidence that at the Subexi sourdough bread was made from barley and broomcorn millet by leavening with a renewable starter comprising baker's yeast and lactic acid bacteria. The baking recipe and flour composition indicated that barley and millet bread belonged to the staple food already in the first millennium BC and suggested the role of Turpan basin as a major route for cultural communication between Western and Eastern Eurasia in antiquity. This article is part of a Special Issue entitled: Proteomics of non-model organisms. Biological significance We demonstrate that organic residues of thousand year old foods unearthed by archeological excavations can be analyzed by geLC-MS/MS proteomics with good representation of protein source organisms and coverage of sequences of identified proteins. In-depth look into the foods proteome identifies the food type and its individual ingredients, reveals ancient food processing technologies, projects their social and economic impact and provides evidence of intercultural communication between ancient populations. Proteomics analysis of ancient organic residues is direct, quantitative and informative and therefore has the potential to develop into a valuable, generally applicable tool in archaeometry. This article is part of a Special Issue entitled: Proteomics of non-model…

Overview

Integrity signals

Registry

Crossref · 10.1016/j.jprot.2013.11.016

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Where environmental contexts have enabled good organic preservation, proteins have been extracted and identified from whole foodstuffs to identify their constituents, for example, from food remains at cemetery sites in the Tarim Basin, China, including whole cheese curds and bread, and in Egyptian tombs.

    “Where environmental contexts have enabled good organic preservation, proteins have been extracted and identified from whole foodstuffs to identify their constituents, for example, from food remains found at cemetery sites in the Tarim Basin, China, including whole cheese curds (100–102) and bread (103), and in Egyptian tombs (104), where dry conditions may have slowed biomolecular deterioration.”

    From Ancient protein analysis in archaeology (2021) · cites this paper as [103]

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 33

  1. Blandino, 2003, Cereal-based fermented foods and beverages, Food Res Int, 36, 527, 10.1016/S0963-9969(03)00009-7 · DOI
  2. Samuel, 1996, Investigation of ancient Egyptian baking and brewing methods by correlative microscopy, Science, 273, 488, 10.1126/science.273.5274.488 · DOI
  3. Henry, 2009, Changes in starch grain morphologies from cooking, J Archaeol Sci, 36, 915, 10.1016/j.jas.2008.11.008 · DOI
  4. Shillito, 2013, Grains of truth or transparent blindfolds? A review of current debates in archaeological phytolith analysis, Veg Hist Archaeobot, 22, 71, 10.1007/s00334-011-0341-z · DOI
  5. Cortella, 1994, Starch grain analysis as a microscopic diagnostic feature in the identification of plant material, Econ Bot, 48, 171, 10.1007/BF02908212 · DOI
  6. Salque, 2013, Earliest evidence for cheese making in the sixth millennium BC in northern Europe, Nature, 493, 522, 10.1038/nature11698 · DOI
  7. Shanks, 2004, DNA and protein recovery from washed experimental stone tools, Archaeometry, 46, 663, 10.1111/j.1475-4754.2004.00181.x · DOI
  8. Solazzo, 2008, Identification of protein remains in archaeological potsherds by proteomics, Anal Chem, 80, 4590, 10.1021/ac800515v · DOI · Paper page
  9. Buckley, 2013, Proteomics analysis of ancient food vessel stitching reveals >4000-year-old milk protein, Rapid Commun Mass Spectrom, 27, 531, 10.1002/rcm.6481 · DOI
  10. Leo, 2011, Deamidation at asparagine and glutamine as a major modification upon deterioration/aging of proteinaceous binders in mural paintings, Anal Chem, 83, 2056, 10.1021/ac1027275 · DOI
  11. Leo, 2009, Proteomic strategies for the identification of proteinaceous binders in paintings, Anal Bioanal Chem, 395, 2269, 10.1007/s00216-009-3185-y · DOI
  12. Fremout, 2010, Tryptic peptide analysis of protein binders in works of art by liquid chromatography–tandem mass spectrometry, Anal Chim Acta, 658, 156, 10.1016/j.aca.2009.11.010 · DOI
  13. Liska, 2003, Expanding organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications, Proteomics, 3, 19, 10.1002/pmic.200390004 · DOI
  14. Shevchenko, 2009, Tools for exploring the proteomosphere, J Proteomics, 72, 137, 10.1016/j.jprot.2009.01.012 · DOI
  15. Katz, 2007, Salt-induced changes in the plasma membrane proteome of the halotolerant alga Dunaliella salina as revealed by Blue-Native gel electrophoresis and nanoLC–MS/MS analysis, Mol Cell Proteomics, 6, 1459, 10.1074/mcp.M700002-MCP200 · DOI
  16. Waridel, 2007, Sequence similarity-driven proteomics in organisms with unknown genomes by LC–MS/MS and automated de novo sequencing, Proteomics, 7, 2318, 10.1002/pmic.200700003 · DOI
  17. Junqueira, 2008, Protein identification pipeline for the homology-driven proteomics, J Proteomics, 71, 346, 10.1016/j.jprot.2008.07.003 · DOI
  18. Habermann, 2004, The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches, Mol Cell Proteomics, 3, 238, 10.1074/mcp.M300073-MCP200 · DOI
  19. Shevchenko, 2001, Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching, Anal Chem, 73, 1917, 10.1021/ac0013709 · DOI
  20. Xinjiang Institute of Archaeology, 2002, MoT, Subeixi site and cemeteries in Shanshan County, Xinjiang, Kaogu, 6, 42
  21. Gong, 2011, Investigation of ancient noodles, cakes, and millet at the Subeixi Site, Xinjiang, China, J Archaeol Sci, 38, 470, 10.1016/j.jas.2010.10.006 · DOI
  22. Knaust, 2012, Horizontal carryover of proteins on one-dimensional polyacrylamide gels may jeopardize gel-enhanced liquid chromatography mass spectrometry proteomic interpretations, Anal Biochem, 421, 779, 10.1016/j.ab.2011.11.011 · DOI
  23. Shevchenko, 2006, In-gel digestion for mass spectrometric characterization of proteins and proteomes, Nat Protoc, 1, 2856, 10.1038/nprot.2006.468 · DOI
  24. Shevchenko, 2001, Archived polyarylamide gels as a resource for proteome characterization by mass spectrometry, Electrophoresis, 22, 1194, 10.1002/1522-2683()22:6<1194::AID-ELPS1194>3.0.CO;2-A · DOI
  25. Vasilj, 2012, Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification, J Proteome Res, 11, 3680, 10.1021/pr300147z · DOI
  26. Reidel, 2011, Proteomic profiling of a layered tissue reveals unique glycolytic specializations of photoreceptor cells, Mol Cell Proteomics, 10, 1, 10.1074/mcp.M110.002469 · DOI
  27. Hong, 2012, Identification of milk component in ancient food residue by proteomics, PLoS One, 7, e37053, 10.1371/journal.pone.0037053 · DOI · Paper page
  28. Zannini, 2009, Microbiological and technological characterization of sourdoughs destined for bread-making with barley flour, Food Microbiol, 26, 744, 10.1016/j.fm.2009.07.014 · DOI
  29. De Vuyst, 2009, Biodiversity, ecological determinants, and metabolic exploitation of sourdough microbiota, Food Microbiol, 26, 666, 10.1016/j.fm.2009.07.012 · DOI
  30. Marklinder, 1995, Sour dough fermentation of barley flours with varied content of mixed-linked (1→3), (1→4) β-d-glucans, Food Microbiol, 12, 363, 10.1016/S0740-0020(95)80117-0 · DOI
  31. Lu, 2009, Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000years ago, Proc Natl Acad Sci U S A, 106, 7367, 10.1073/pnas.0900158106 · DOI
  32. Lee, 2007, Plants and people from the Early Neolithic to Shang periods in North China, Proc Natl Acad Sci U S A, 104, 1087, 10.1073/pnas.0609763104 · DOI
  33. Shukla, 2001, Zein: the industrial protein from corn, Ind Crops Prod, 13, 171, 10.1016/S0926-6690(00)00064-9 · DOI

Cited by

Sorted by citations

Metadata

Authors
Shevchenko, A., Yang, Y., Knaust, A., Thomas, H., Jiang, H., Lu, E., Wang, C., & Shevchenko, A.
Venue
Journal of Proteomics
Publisher
Elsevier BV
Published
2014-06
Volume
105
Pages
363-371
ISSN
1874-3919
Cited by
89
References
2
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review