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Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
Abstract
In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this wide-reaching change is the continuous development of image processing software. Here we present Scipion, a software framework for integrating several 3DEM software packages through a workflow-based approach. Scipion allows the execution of reusable, standardized, traceable and reproducible image-processing protocols. These protocols incorporate tools from different programs while providing full interoperability among them. Scipion is an open-source project that can be downloaded from http://scipion.cnb.csic.es.
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Cites
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Metadata
- Authors
- de la Rosa-Trevín, J. M., Quintana, A., del Cano, L., Zaldívar, A., Foche, I., Gutiérrez, J., Gómez-Blanco, J., Burguet-Castell, J., Cuenca-Alba, J., Abrishami, V., Vargas, J., Otón, J., Sharov, G., Vilas, J. L., Navas, J., Conesa, P., Kazemi, M., Marabini, R., Sorzano, C. O. S., & Carazo, J. M.
- Venue
- Journal of Structural Biology
- Publisher
- Elsevier BV
- Published
- 2016-07
- Volume
- 195
- Issue
- 1
- Pages
- 93-99
- ISSN
- 1047-8477 (ISSN-L)
- OpenAlex
- W2340685884
- Cited by
- 589
- References
- 2
- FWCI
- 23.00
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- Funders
- MINECO (AIC-A-2011-0638, BFU2013-41249-P, BIO2013-44647-R)
- Comunidad de Madrid (S2010/BMD-2305)
- European Union
- Instruct
- ESFRI
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