The DOI matches its Crossref record; 56 of the 56 references it cites were found in a registry or an index.
Abundance-occupancy distributions to prioritize plant core microbiome membership
Open accessAbstract
Core microbiome members are consistent features of a dataset that are hypothesized to reflect underlying functional relationships with the host. A review of the recent plant-microbiome literature reveals a variety of study-specific approaches used to define the core, which presents a challenge to building a general plant-microbiome framework. Abundance-occupancy distributions, used in macroecology to describe changes in community diversity over space, offer an ecological approach for prioritizing core membership for both spatial and temporal studies. Additionally, neutral models fit to the abundance-occupancy distributions can provide insights into deterministically selected core members. We provide examples and code to systematically explore a core plant microbiome from abundance-occupancy distributions. Though we focus on examples from and discussions relevant to the plant microbiome, the abundance-occupancy method can be widely and generally applied to prioritize core membership for any microbiome.
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Cites
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Cited by
Applying the core microbiome to understand host–microbe systems
Risely, A. (2020) · Journal of Animal Ecology · doi:10.1111/1365-2656.13229 · Cited by 363
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Regional biogeography versus intra-annual dynamics of the root and soil microbiome
Bell-Dereske, L. P., Benucci, G. M. N., da Costa, P. B., Bonito, G., Friesen, M. L., Tiemann, L. K., & Evans, S. E. (2023) · Environmental Microbiome · doi:10.1186/s40793-023-00504-x · Cited by 14
Metadata
- Authors
- Shade, A., & Stopnisek, N.
- Venue
- Current Opinion in Microbiology
- Publisher
- Elsevier BV
- Published
- 2019-06
- Volume
- 49
- Pages
- 50-58
- ISSN
- 1369-5274 (ISSN-L)
- OpenAlex
- W2987837450
- Cited by
- 264
- References
- 56
- FWCI
- 2.97
- Type
- journal article
- Language
- en
- Open access
- hybrid
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