The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Structure, variation, and assembly of the root-associated microbiomes of rice
Open accessAbstract
Significance: Land plants continuously contact beneficial, commensal, and pathogenic microbes in soil via their roots. There is limited knowledge as to how the totality of root-associated microbes (i.e., the microbiome) is shaped by various factors or its pattern of acquisition in the root. Using rice as a model, we show that there exist three different root niches hosting different microbial communities of eubacteria and methanogenic archaea. These microbial communities are affected by geographical location, soil source, host genotype, and cultivation practice. Dynamics of the colonization pattern for the root-associated microbiome across the three root niches provide evidence for rapid acquisition of root-associated microbiomes from soil, and support a multistep model wherein each root niche plays a selective role in microbiome assembly.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
The rhizosphere microbiome and plant health
Berendsen, R. L., Pieterse, C. M. J., & Bakker, P. A. H. M. (2012) · Trends in Plant Science · doi:10.1016/j.tplants.2012.04.001 · Cited by 5,347
Structure and functions of the bacterial microbiota of plants
Bulgarelli, D., Schlaeppi, K., Spaepen, S., van Themaat, E. V. L., & Schulze-Lefert, P. (2013) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050312-120106 · Cited by 3,308
Development of the Human Infant Intestinal Microbiota
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., & Brown, P. O. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050177 · Cited by 2,877
Succession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540
Electron transfer in syntrophic communities of anaerobic bacteria and archaea
Stams, A. J. M., & Plugge, C. M. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2166 · Cited by 1,441
Cited by
A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application
Compant, S., Samad, A., Faist, H., & Sessitsch, A. (2019) · Journal of Advanced Research · doi:10.1016/j.jare.2019.03.004 · Cited by 1,643
Microbiota and Host Nutrition across Plant and Animal Kingdoms
Hacquard, S., Garrido-Oter, R., González, A., Spaepen, S., Ackermann, G., Lebeis, S., McHardy, A. C., Dangl, J. L., Knight, R., Ley, R., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.009 · Cited by 779
Interplay Between Innate Immunity and the Plant Microbiota
Hacquard, S., Spaepen, S., Garrido-Oter, R., & Schulze-Lefert, P. (2017) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-080516-035623 · Cited by 513
Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice
Su, J., Hu, C., Yan, X., Jin, Y., Chen, Z., Guan, Q., Wang, Y., Zhong, D., Jansson, C., Wang, F., et al. (2015) · Nature · doi:10.1038/nature14673 · Cited by 210
Endophytic bacterial and fungal microbiota in sprouts, roots, and stems of rice (Oryza sativa L.)
Wang, W., Zhai, Y., Cao, L., Tan, H., & Zhang, R. (2016) · Microbiological Research · doi:10.1016/j.micres.2016.04.009 · Cited by 136
Metadata
- Authors
- Edwards, J., Johnson, C., Santos-Medellín, C., Lurie, E., Podishetty, N. K., Bhatnagar, S., Eisen, J. A., & Sundaresan, V.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2015-01-20
- Volume
- 112
- Issue
- 8
- Pages
- E911-20
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2054600557
- Cited by
- 2,856
- References
- 6
- FWCI
- 144.10
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Structure, variation, and assembly of the root-associated microbiomes of rice. https://app.cochat.ai/papers/10.1073/pnas.1414592112
- The paper
- Edwards, J., Johnson, C., Santos-Medellín, C., Lurie, E., Podishetty, N. K., Bhatnagar, S., Eisen, J. A., & Sundaresan, V. (2015). Structure, variation, and assembly of the root-associated microbiomes of rice. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1414592112
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.