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Structure, variation, and assembly of the root-associated microbiomes of rice

Open access
Edwards, Joseph, Johnson, Cameron, Santos-Medellín, Christian, Lurie, Eugene, Podishetty, Natraj Kumar, Bhatnagar, Srijak, Eisen, Jonathan A., Sundaresan, Venkatesan·2015·Proceedings of the National Academy of Sciences

Abstract

Significance: Land plants continuously contact beneficial, commensal, and pathogenic microbes in soil via their roots. There is limited knowledge as to how the totality of root-associated microbes (i.e., the microbiome) is shaped by various factors or its pattern of acquisition in the root. Using rice as a model, we show that there exist three different root niches hosting different microbial communities of eubacteria and methanogenic archaea. These microbial communities are affected by geographical location, soil source, host genotype, and cultivation practice. Dynamics of the colonization pattern for the root-associated microbiome across the three root niches provide evidence for rapid acquisition of root-associated microbiomes from soil, and support a multistep model wherein each root niche plays a selective role in microbiome assembly.

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Metadata

Authors
Edwards, J., Johnson, C., Santos-Medellín, C., Lurie, E., Podishetty, N. K., Bhatnagar, S., Eisen, J. A., & Sundaresan, V.
Venue
Proceedings of the National Academy of Sciences
Published
2015-01-20
Volume
112
Issue
8
Pages
E911-20
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2054600557
Cited by
2,856
References
6
FWCI
144.10
Type
journal article
Language
en
Open access
green

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CoChat. (2026). Citation check: Structure, variation, and assembly of the root-associated microbiomes of rice. https://app.cochat.ai/papers/10.1073/pnas.1414592112
The paper
Edwards, J., Johnson, C., Santos-Medellín, C., Lurie, E., Podishetty, N. K., Bhatnagar, S., Eisen, J. A., & Sundaresan, V. (2015). Structure, variation, and assembly of the root-associated microbiomes of rice. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1414592112

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.