Genome-wide Analysis of PTB-RNA Interactions Reveals a Strategy Used by the General Splicing Repressor to Modulate Exon Inclusion or Skipping
Xue, Yuanchao, Zhou, Yu, Wu, Tongbin, Zhu, Tuo, Ji, Xiong, Kwon, Young-Soo, Zhang, Chao, Yeo, Gene, Black, Douglas L., Sun, Hui, Fu, Xiang-Dong, Zhang, Yi·2009·Molecular Cell
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Items 201–300 of 469
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- Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencingYu Xiao, Yan-Ming Chen, Zhongyu Zou, Chang Ye, Xiaoyang Dou, Jinjun Wu, Chang Liu, Shun Liu, Hao Yan, Pingluan Wang et al. · 2024 · Nature Methods
- RNA binding proteins: a common denominator of neuronal function and dysfunctionEpaminondas Doxakis · 2014 · Neuroscience Bulletin
- Deciphering the protein‐RNA recognition code: Combining large‐scale quantitative methods with structural biologyJanosch Hennig, Michael Sattler · 2015 · BioEssays
- PTBP1 mRNA isoforms and regulation of their translationLuisa Arake de Tacca, Mia C. Pulos-Holmes, Stephen N. Floor, Jamie H. D. Cate · 2019 · RNA
- PTBP1 as a potential regulator of diseaseQi Yu, Tongtong Wu, Wenhong Xu, Junyuan Wei, Anqi Zhao, Miaomiao Wang, Meiying Li, Guangfan Chi · 2023 · Molecular and Cellular Biochemistry
- Genome-Wide Mapping of Cellular Protein–RNA Interactions Enabled by Chemical CrosslinkingXiaoyu Li, Jinghui Song, Chengqi Yi · 2014 · Genomics Proteomics & Bioinformatics
- Direct Reprogramming of Huntington’s Disease Patient Fibroblasts into Neuron-Like Cells Leads to Abnormal Neurite Outgrowth, Increased Cell Death, and Aggregate FormationYanying Liu, Yuanchao Xue, Samantha Ridley, Dong Zhang, Khosrow S. Rezvani, Xiang-Dong Fu, Hongmin Wang · 2014 · PLoS ONE
- FOXA1 regulates alternative splicing in prostate cancerMarco Del Giudice, John Gordon Foster, Serena Peirone, Alberto Rissone, Livia Caizzi, Federica Gaudino, Caterina Parlato, Francesca Anselmi, Rebecca Arkell, Simonetta Guarrera et al. · 2022 · Cell Reports
- Generation of functionally distinct isoforms of PTBP3 by alternative splicing and translation initiationLit-Yeen Tan, Phillip D. Whitfield, Miriam Llorian, Elisa Monzón‐Casanova, Manuel D. Díaz‐Muñoz, Martin Turner, Christopher W. J. Smith · 2015 · Nucleic Acids Research
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- Alternative splicing in plantsCraig G. Simpson, Dominika Lewandowska, John Fuller, Monika Maronova, Maria Kalyna, Diane Davidson, Jim McNicol, Katarzyna Dorota Raczyńska, Artur Jarmołowski, Andrea Barta et al. · 2008 · Biochemical Society Transactions
- SRSF1 and PTBP1 Are trans -Acting Factors That Suppress the Formation of a CD33 Splicing Isoform Linked to Alzheimer’s Disease RiskPetra van Bergeijk, Uthpala I. Seneviratne, Estel Aparicio-Prat, Robert V. Stanton, Samuel A. Hasson · 2019 · Molecular and Cellular Biology
- N6-Methyladenosine-modified lncRNA LINREP promotes Glioblastoma progression by recruiting the PTBP1/HuR complexXiaoshuai Ji, Zihao Liu, Jiajia Gao, Xin Bing, Dong He, Wenqing Liu, Yunda Wang, Yanbang Wei, Xianyong Yin, Fenglin Zhang et al. · 2022 · Cell Death and Differentiation
- Structural insights into the targeting of mRNA GU-rich elements by the three RRMs of CELF1J. M. Edwards, J. Long, Cornelia H. de Moor, Jonas Emsley, Mark S. Searle · 2013 · Nucleic Acids Research
- Differential effects of PKA-controlled CaMKK2 variants on neuronal differentiationWenguang Cao, Muhammad Sohail, Guodong Liu, Gérémy Abdull Koumbadinga, Vincent G. Lobo, Jiuyong Xie · 2011 · RNA Biology
- GoldCLIP: Gel-Omitted Ligation-Dependent CLIPJiaqi Gu, Ming Wang, Yang Yang, Ding Qiu, Yiqun Zhang, Jinbiao Ma, Yu Zhou, Gregory J. Hannon, Yang Yu · 2018 · Genomics Proteomics & Bioinformatics
- PTBP1 promotes tumorigenesis by regulating apoptosis and cell cycle in colon cancerXiaona Li, Fei Han, Wenbin Liu, Xiaoyan Shi · 2018 · Bulletin du Cancer
- PTBP1-activated co-transcriptional splicing controls epigenetic status of pluripotent stem cellsCamilla Iannone, Yaroslav A. Kainov, Anna Zhuravskaya, Fursham Hamid, Takayuki Nojima, Eugene V. Makeyev · 2022 · Molecular Cell
- Improved binding site assignment by high-resolution mapping of RNA–protein interactions using iCLIPChristian Hauer, Tomaž Curk, Simon Anders, Thomas Schwarzl, Anne-Marie Alleaume, Jana Sieber, Ina Hollerer, Madhuri Bhuvanagiri, Wolfgang K. Huber, Matthias W. Hentze et al. · 2015 · Nature Communications
- Allogeneic T cell responses are regulated by a specific miRNA-mRNA networkYaping Sun, Isao Tawara, Meng Zhao, Zhaohui Steve Qin, Tomomi Toubai, Nathan D. Mathewson, Hiroya Tamaki, Evelyn C. Nieves, Arul M. Chinnaiyan, Pavan R. Reddy · 2013 · Journal of Clinical Investigation
- Multiple determinants of splicing repression activity in the polypyrimidine tract binding proteins, PTBP1 and PTBP2Niroshika Keppetipola, Kyu‐Hyeon Yeom, Adrian L. Hernandez Lopez, Tessa Bui, Shalini Sharma, Douglas L. Black · 2016 · RNA
- Splicing Dysregulation as Oncogenic Driver and Passenger Factor in Brain TumorsPamela Bielli, Vittoria Pagliarini, Marco Pieraccioli, Cinzia Caggiano, Claudio Sette · 2019 · Cells
- SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesisHailian Zhao, Zhaokui Cai, Jian Yu Rao, Di Wu, Lei Ji, Rong Ye, Di Wang, Juan Chen, Changchang Cao, Naijing Hu et al. · 2023 · Molecular Cell
- CLIPing the brain: Studies of protein–RNA interactions important for neurodegenerative disordersMiha Modic, Jernej Ule, Christopher R. Sibley · 2013 · Molecular and Cellular Neuroscience
- A mechanism underlying position-specific regulation of alternative splicingFursham Hamid, Eugene V. Makeyev · 2017 · Nucleic Acids Research
- PolyC-binding proteins enhance expression of the CDK2 cell cycle regulatory protein via alternative splicingXinjun Ji, Jesse Humenik, Daphne Yang, Stephen A. Liebhaber · 2017 · Nucleic Acids Research
- Regulation of mRNA Abundance by Polypyrimidine Tract-Binding Protein-Controlled Alternate 5′ Splice Site ChoiceFursham Hamid, Eugene V. Makeyev · 2014 · PLoS Genetics
- Recent computational developments on CLIP-seq data analysis and microRNA targeting implicationsSilvia Bottini, David Pratella, Valérie Grandjean, Emanuela Repetto, Michèle Trabucchi · 2017 · Briefings in Bioinformatics
- Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activityAlexey A. Gritsenko, Shira Weingarten-Gabbay, Shani Elias‐Kirma, Ronit Nir, Dick de Ridder, Eran Segal · 2017 · PLoS Computational Biology
- Nanopore sequencing reveals full‐length Tropomyosin 1 isoforms and their regulation by RNA‐binding proteins during rat heart developmentJun Cao, Andrew L. Routh, Muge N. Kuyumcu‐Martinez · 2021 · Journal of Cellular and Molecular Medicine
- BCR-ABL mediated repression of miR-223 results in the activation of MEF2C and PTBP2 in chronic myeloid leukemiaS Agatheeswaran, S Singh, S Biswas, Ghanashyam Biswas, Naresh Chandra Pattnayak, Soumen Chakraborty · 2012 · Leukemia
- An improved iCLIP protocolFlora C. Y. Lee, Anob M. Chakrabarti, Heike Hänel, Elisa Monzón‐Casanova, Martina Hallegger, Cristina Militti, Federica Capraro, Christoph Sadée, Patrick Toolan-Kerr, Oscar G. Wilkins et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factorsZhenqing Ye, Zhong Chen, Xun Lan, Stephen Hara, Benjamin D. Sunkel, Tim H.‐M. Huang, Laura L. Elnitski, Qianben Wang, Victor X. Jin · 2013 · Nucleic Acids Research
- uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteinsDaniel Maticzka, İbrahim Ilik, Tuğçe Aktaş, Rolf Backofen, Asifa Akhtar · 2018 · Nature Communications
- Knockdown of polypyrimidine tract binding protein facilitates motor function recovery after spinal cord injuryRiyun Yang, Rui Chai, Jing-Ying Pan, Jingying Pan, Pan-Hui Xia, Yan-Kai Wang, Ying Chen, Yi Li, Jian Wu, Gang Chen · 2022 · Neural Regeneration Research
- Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1Xin Wang, Liran Juan, Junjie Lv, Kejun Wang, Jeremy R. Sanford, Yunlong Liu · 2011 · BMC Genomics
- Messenger RNA processing is altered in autosomal dominant leukodystrophyAnna Bartoletti‐Stella, Laura Gasparini, Caterina Giacomini, Patrizia Corrado, Rossana Terlizzi, Elisa Giorgio, Pamela Magini, Marco Seri, Agostino Baruzzi, Piero Parchi et al. · 2015 · Human Molecular Genetics
- Purifying Selection on Exonic Splice Enhancers in Intronless GenesRosina Savisaar, Laurence D. Hurst · 2016 · Molecular Biology and Evolution
- Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulationXinjun Zhang, H. Lin, Huiying Zhao, Yangyang Hao, Matthew E. Mort, D.N. Cooper, Yaoqi Zhou, Yunlong Liu · 2014 · Human Molecular Genetics
- Post-Translational Modifications in Polypyrimidine Tract Binding Proteins PTBP1 and PTBP2Jeffrey M. Pina, Janice Reynaga, Anthony Truong, Niroshika Keppetipola · 2018 · Biochemistry
- Functional interactions between polypyrimidine tract binding protein and PRI peptide ligand containing proteinsMiguel B. Coelho, David Benjamin Ascher, Clare Gooding, Emma Lang, Hannah Maude, David A. Turner, Miriam Llorian, Douglas E. V. Pires, Jan Attig, Christopher W. J. Smith · 2016 · Biochemical Society Transactions
- Lobaplatin arrests cell cycle progression, induces apoptosis and alters the proteome in human cervical cancer cell Line CaSkiXiaoqin Li, Li Ran, Wen Fang, Donghong Wang · 2013 · Biomedicine & Pharmacotherapy
- Microarray expression profiling and bioinformatics analysis of circular RNA expression in lung squamous cell carcinoma.Jiali Xu, Yongqian Shu, Tongpeng Xu, Wei Zhu, Tianzhu Qiu, Jun Li, Meiling Zhang, Jing Xu, Renhua Guo, Kaihua Lu et al. · 2018 · PubMed Central
- PTBP3 mediates TGF-β-induced EMT and metastasis of lung adenocarcinomaChenglai Dong, Kaiqin Wu, Shaorui Gu, Wenli Wang, Shiliang Xie, Yongxin Zhou · 2022 · Cell Cycle
- Splicing Regulation of Pro-Inflammatory Cytokines and Chemokines: At the Interface of the Neuroendocrine and Immune SystemsFelitsiya Shakola, Parul Suri, Matteo Ruggiu · 2015 · Biomolecules
- Polypyrimidine Tract Binding Protein (hnRNP I) Is Possibly a Conserved Modulator of miRNA-Mediated Gene RegulationBart Engels, Guillaume Jannot, Judit Reményi, Martin J. Simard, György Hutvágner · 2012 · PLoS ONE
- PTBP1 knockdown in renal cell carcinoma inhibits cell migration, invasion and angiogenesis in vitro and metastasis in vivo via the hypoxia inducible factor-1α pathwayHaixia Shan, Pingfu Hou, Meng Zhang, Liantao Li, Yu Pan, Fang Chen, Tao Jiang, Jin Bai, Junnian Zheng · 2018 · International Journal of Oncology
- Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibilityDorn, Georg, Gmeiner, Christoph, de Vries, Tebbe, Dedic, Emil, Novakovic, Mihajlo, Damberger, Fred F., Maris, Christophe, Finol, Esteban, Sarnowski, Chris P., Kohlbrecher, Joachim et al. · 2023 · Nature Communications
- Remodelling of a polypyrimidine tract-binding protein complex during apoptosis activates cellular IRESsHelen A. King, Laura C. Cobbold, Xavier Pichon, Tuija A. A. Pöyry, L A Wilson, H Booden, Rebekah Jukes‐Jones, Kelvin Cain, Kathryn Susan Lilley, Martin Bushell et al. · 2013 · Cell Death and Differentiation
- Combinatorial Mutagenesis of MBNL1 Zinc Fingers Elucidates Distinct Classes of Regulatory EventsJamie Purcell, Julia C. Oddo, Eric T. Wang, J. Andrew Berglund · 2012 · Molecular and Cellular Biology
- The RNA binding protein EWS is broadly involved in the regulation of pri-miRNA processing in mammalian cellsHuiwu Ouyang, Kai Zhang, Kristi L. Fox-Walsh, Yang Yang, Chen Zhang, Jie Sheng Huang, Hairi Li, Yu Zhou, Xiang‐Dong Fu · 2017 · Nucleic Acids Research
- The aberrant splicing of BAF45d links splicing regulation and transcription in glioblastomaGuillermo Aldave, Marisol González-Huarriz, Ángel Rubio, Juan P. Romero, D. Garcia Ravi, Belén Miñana, Mar Cuadrado‐Tejedor, Ana García‐Osta, Roeland G. W. Verhaak, Enric Xipell et al. · 2018 · Neuro-Oncology
- Both maintenance and avoidance of RNA-binding protein interactions constrain coding sequence evolutionRosina Savisaar, Laurence D. Hurst · 2017 · Molecular Biology and Evolution
- A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq dataShuya Li, Fanghong Dong, Yuexin Wu, Sai Zhang, Chen Zhang, Xiao Liu, Tao Jiang, Jianyang Zeng · 2017 · Nucleic Acids Research
- Dysregulated glucuronic acid metabolism exacerbates hepatocellular carcinoma progression and metastasis through the TGFβ signalling pathwayQingzhu Gao, Bin Cheng, Chang Chen, Chong Lei, Xue Lin, Dan Nie, Jingjing Li, Luyi Huang, Xiaosong Li, Kai Wang et al. · 2022 · Clinical and Translational Medicine
- Cell-specific regulation of Fas exon 6 splicing mediated by Hu antigen RJosé M. Izquierdo · 2010 · Biochemical and Biophysical Research Communications
- Drosophila polypyrimidine tract-binding protein is necessary for spermatid individualizationMark D. Robida, Vinod Sridharan, Sheridan Morgan, Timsi Rao, Ravinder Singh · 2010 · Proceedings of the National Academy of Sciences
- hnRNP I regulates neonatal immune adaptation and prevents colitis and colorectal cancerZhigang Jin, Feng Liang, Jing Yang, Wenyan Mei · 2017 · PLoS Genetics
- RNA-binding proteins RBM20 and PTBP1 regulate the alternative splicing of FHOD3P. Lorenzi, Antonella Sangalli, Stefania Fochi, Anna Dal Molin, Giovanni Malerba, Donato Zipeto, Maria G. Romanelli · 2018 · The International Journal of Biochemistry & Cell Biology
- Context-dependent splicing regulationShengdong Ke, Lawrence A. Chasin · 2011 · RNA Biology
- Position-dependent effects of RNA-binding proteins in the context of co-transcriptional splicingTimur Horn, Alison R Gosliga, Congxin Li, Mihaela Enculescu, Stefan Legewie · 2023 · npj Systems Biology and Applications
- A pathway involving HDAC5, cFLIP and caspases regulates expression of the splicing regulator polypyrimidine tract binding protein in the heartJunmei Ye, Miriam Llorian, Maria Cardona, Anthony Rongvaux, Rana S. Moubarak, Joan X. Comella, Rhonda Bassel‐Duby, Richard Anthony Flavell, Eric N. Olson, Christopher W. J. Smith et al. · 2013 · Journal of Cell Science
- Large-scale remodeling of a repressed exon ribonucleoprotein to an exon definition complex active for splicingSomsakul Pop Wongpalee, Ajay Amar Vashisht, Shalini Sharma, Darryl Chui, James Akira Wohlschlegel, Douglas L. Black · 2016 · eLife
- Mammalian RNA switches: Molecular rheostats in gene regulation, disease, and medicineKadiam C. Venkata Subbaiah, Omar M. Hedaya, Jiangbin Wu, Feng Jiang, Peng Yao · 2019 · Computational and Structural Biotechnology Journal
- PTBP1 suppresses porcine epidemic diarrhea virus replication via inducing protein degradation and IFN productionWenzhen Qin, Ning Kong, Yu Zhang, Chunmei Wang, Sujie Dong, Huanjie Zhai, Xueying Zhai, Xinyu Yang, Chenqian Ye, Manqing Ye et al. · 2023 · Journal of Biological Chemistry
- The lncRNA MIR99AHG directs alternative splicing of SMARCA1 by PTBP1 to enable invadopodia formation in colorectal cancer cellsDanxiu Li, Xin Wang, Hui Miao, Hao Liu, Maogui Pang, Hao Guo, Minghui Ge, Sarah E. Glass, Stephan Emmrich, Songtao Ji et al. · 2023 · Science Signaling
- The impact of RNA binding motif protein 4-regulated splicing cascade on the progression and metabolism of colorectal cancer cellsYu‐Chih Liang, Wei-Cheng Lin, Ying‐Ju Lin, Jung-Chun Lin · 2015 · Oncotarget
- Hydrogen Peroxide Alters Splicing of Soluble Guanylyl Cyclase and Selectively Modulates Expression of Splicing Regulators in Human Cancer CellsGilbert J. Cote, Wen Zhu, Anthony Thomas, Emil Martin, Ferid Murad, Iraida G. Sharina · 2012 · PLoS ONE
- Deep multi-scale attention network for RNA-binding proteins predictionBo Du, Ziyi Liu, Fulin Luo · 2021 · Information Sciences
- LncRNA CCTT-mediated RNA-DNA and RNA-protein interactions facilitate the recruitment of CENP-C to centromeric DNA during kinetochore assemblyChong Zhang, Dongpeng Wang, Yajing Hao, Shuheng Wu, Jianjun Luo, Yuanchao Xue, Di Wang, Guohong Li, Lihui Liu, Changwei Shao et al. · 2022 · Molecular Cell
- Polypyrimidine tract binding proteins PTBP1 and PTBP2 interact with distinct proteins under splicing conditionsJeffrey M. Pina, Luis C. Hernandez, Niroshika Keppetipola · 2022 · PLoS ONE
- PTBP1 promotes hematopoietic stem cell maintenance and red blood cell development by ensuring sufficient availability of ribosomal constituentsMatilda Rehn, Anne Wenzel, Anne-Katrine Frank, Mikkel Bruhn Schuster, Sachin Pundhir, Nanna Jørgensen, Kristoffer Vitting‐Seerup, Ying Chun Ge, Johan Jendholm, Magali Michaut et al. · 2022 · Cell Reports
- Human polypyrimidine tract-binding protein interacts with mitochondrial tRNAThrin the cytosolAline Marnef, Beáta E. Jády, Tamás Kiss · 2015 · Nucleic Acids Research
- Regulation of splicing enhancer activities by RNA secondary structuresWei Liu, Yu Zhou, Zexi Hu, Tao Sun, Alain Denise, Xiang‐Dong Fu, Yi Zhang · 2010 · FEBS Letters
- A Review About RNA–Protein-Binding Sites Prediction Based on Deep LearningJianrong Yan, Min Zhu · 2020 · IEEE Access
- DeepPN: a deep parallel neural network based on convolutional neural network and graph convolutional network for predicting RNA-protein binding sitesJidong Zhang, Бо Лю, Zhihan Wang, Klaus Lehnert, MARK N. GAHEGAN · 2022 · BMC Bioinformatics
- CLIP: viewing the RNA world from an RNA-protein interactome perspectiveYin Zhang, Shu‐Juan Xie, Hui Min Xu, Liang‐Hu Qu · 2015 · Science China Life Sciences
- Chromatin: The Final Frontier in Splicing Regulation?Kristi L. Fox-Walsh, Xiang‐Dong Fu · 2010 · Developmental Cell
- Transcriptional analysis of phloem-associated cells of potatoTian Lin, Coralie C. Lashbrook, Sung Ki Cho, Nathaniel Butler, Pooja Sharma, Usha K. Muppirala, Andrew Josef Severin, David J. Hannapel · 2015 · BMC Genomics
- An Integrated Regulatory Network Reveals Pervasive Cross-Regulation among Transcription and Splicing FactorsIdit Kosti, Predrag Radivojac A, Yael Mandel‐Gutfreund · 2012 · PLoS Computational Biology
- Genome-Wide Activities of RNA Binding Proteins That Regulate Cellular Changes in the Epithelial to Mesenchymal Transition (EMT)Thomas W. Bebee, Benjamin Walter Cieply, Russ P. Carstens · 2014 · Advances in experimental medicine and biology
- Cannabinoid type 1 receptor mediates depot-specific effects on differentiation, inflammation and oxidative metabolism in inguinal and epididymal white adipocytesIsabel Viola Wagner, Nina Perwitz, Maren Drenckhan, Hendrik Lehnert, J Klein · 2011 · Nutrition and Diabetes
- Evolutionary Emergence of a Novel Splice Variant with an Opposite Effect on the Cell CycleMuhammad Farhan Sohail, Jiuyong Xie · 2015 · Molecular and Cellular Biology
- Regulation of alternative splicing: Functional interplay with epigenetic modifications and its implication to cancerNing Wang, Yue Hu, Zefeng Wang · 2023 · Wiley Interdisciplinary Reviews - RNA
- Splicing in the Human BrainAmmar Zaghlool, Adam Ameur, Lucia B. Cavelier, Lars Feuk · 2014 · International review of neurobiology
- A structured RNA in hepatitis B virus post‐transcriptional regulatory element represses alternative splicing in a sequence‐independent and position‐dependent mannerChen Huang, Maohua Xie, Wei Liu, Bo Yang, Fan Yang, Jingang Huang, Jie Sheng Huang, Qijia Wu, Xiang‐Dong Fu, Yi Zhang · 2011 · FEBS Journal
- PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expressionUllas Valiya Chembazhi, Wesley Tung, Hyojeong Hwang, Yuexi Wang, Aryan Lalwani, Ka Lam Nguyen, Sushant Bangru, Danielle Yee, Kristy Chin, Jing Yang et al. · 2023 · Nucleic Acids Research
- SRSF1-mediated alternative splicing is required for spermatogenesisWen‐Long Lei, Yuanyuan Li, Zongchang Du, Ruibao Su, Tie‐Gang Meng, Yan Ning, Guan-Mei Hou, Heide Schatten, Zhen‐Bo Wang, Zhiming Han et al. · 2023 · International Journal of Biological Sciences
- Discovery of protein–RNA networksDavide Cirillo, Carmen Maria Livi, Federico Agostini, Gian Gaetano Tartaglia · 2014 · Molecular BioSystems