Cited by 94Alzheimer's disease research and treatmentsDementia and Cognitive Impairment ResearchNeuroinflammation and Neurodegeneration Mechanisms

TYROBP genetic variants in early-onset Alzheimer's disease

Open access
Pottier, Cyril, Ravenscroft, Thomas A., Brown, Patricia H., Finch, NiCole A., Baker, Matt, Parsons, Meeia, Asmann, Yan W., Ren, Yingxue +22 more·2016·Neurobiology of Aging

Abstract

We aimed to identify new candidate genes potentially involved in early-onset Alzheimer's disease (EOAD). Exome sequencing was conducted on 45 EOAD patients with either a family history of Alzheimer's disease (AD, <65 years) or an extremely early age at the onset (≤55 years) followed by multiple variant filtering according to different modes of inheritance. We identified 29 candidate genes potentially involved in EOAD, of which the gene TYROBP, previously implicated in AD, was selected for genetic and functional follow-up. Using 3 patient cohorts, we observed rare coding TYROBP variants in 9 out of 1110 EOAD patients, whereas no such variants were detected in 1826 controls (p = 0.0001), suggesting that at least some rare TYROBP variants might contribute to EOAD risk. Overexpression of the p.D50_L51ins14 TYROBP mutant led to a profound reduction of TREM2 expression, a well-established risk factor for AD. This is the first study supporting a role for genetic variation in TYROBP in EOAD, with in vitro support for a functional effect of the p.D50_L51ins14 TYROBP mutation on TREM2 expression.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.neurobiolaging.2016.07.028

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • TYROBP is a transmembrane adaptor protein for TREM2, SIRPβ1, and CR3 receptors, which are known to be involved in AD pathogenesis.

    “TYROBP is a transmembrane adaptor protein for TREM2, SIRPβ1, and CR3 receptors, which are known to be involved in AD pathogenesis [90–92].”

    From Sex-specific DNA methylation differences in Alzheimer’s disease pathology (2021) · cites this paper as [91]

    The Introduction and Discussion (page not available in our copy) describe TYROBP as a transmembrane protein, identify it as a TREM2 binding partner, and link TREM2 and TYROBP to Alzheimer’s disease. The passages do not identify SIRPβ1 or CR3 as TYROBP-associated receptors or establish their involvement in AD pathogenesis. (LLM, conf=0.88)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 26

  1. Bouchon A Hernandez-Munain C Cella M Colonna M A DAP12-mediated pathway regulates expression of CC chemokine receptor 7 and maturation of human dendritic cells J Exp Med 2001 194 1111 1122 11602640 PMC2193511
  2. Brckalo T Calzetti F Perez-Cabezas B Borras FE Cassatella MA Lopez-Botet M Functional analysis of the CD300e receptor in human monocytes and myeloid dendritic cells Eur J Immunol 2010 40 722 732 20039296
  3. De Jesus-Cortes HJ Nogueras-Ortiz CJ Gearing M Arnold SE Vega IE Amphiphysin-1 protein level changes associated with tau-mediated neurodegeneration Neuroreport 2012 23 942 946 22975846 PMC3696496
  4. DePristo MA Banks E Poplin R Garimella KV Maguire JR Hartl C Philippakis AA del Angel G Rivas MA Hanna M McKenna A Fennell TJ Kernytsky AM Sivachenko AY Cibulskis K Gabriel SB Altshuler D Daly MJ A framework for variation discovery and genotyping using next-generation DNA sequencing data Nat Genet 2011 43 491 498 21478889 PMC3083463
  5. Gonzalez MA Lebrigio RF Van Booven D Ulloa RH Powell E Speziani F Tekin M Schule R Zuchner S GEnomes Management Application (GEM.app): a new software tool for large-scale collaborative genome analysis Hum Mutat 2013 34 842 846 23463597 PMC4345138
  6. Guerreiro R Wojtas A Bras J Carrasquillo M Rogaeva E Majounie E Cruchaga C Sassi C Kauwe JS Younkin S Hazrati L Collinge J Pocock J Lashley T Williams J Lambert JC Amouyel P Goate A Rademakers R Morgan K Powell J St George-Hyslop P Singleton A Hardy J TREM2 variants in Alzheimer’s disease N Engl J Med 2013 368 117 127 23150934 PMC3631573
  7. Guerreiro RJ Lohmann E Kinsella E Bras JM Luu N Gurunlian N Dursun B Bilgic B Santana I Hanagasi H Gurvit H Gibbs JR Oliveira C Emre M Singleton A Exome sequencing reveals an unexpected genetic cause of disease: NOTCH3 mutation in a Turkish family with Alzheimer’s disease Neurobiol Aging 2012 33 1008 e1017 e1023 PMC3306507 22153900
  8. Hickman SE Kingery ND Ohsumi TK Borowsky ML Wang LC Means TK El Khoury J The microglial sensome revealed by direct RNA sequencing Nat Neurosci 2013 16 1896 1905 24162652 PMC3840123
  9. Jonsson T Stefansson H Steinberg S Jonsdottir I Jonsson PV Snaedal J Bjornsson S Huttenlocher J Levey AI Lah JJ Rujescu D Hampel H Giegling I Andreassen OA Engedal K Ulstein I Djurovic S Ibrahim-Verbaas C Hofman A Ikram MA van Duijn CM Thorsteinsdottir U Kong A Stefansson K Variant of TREM2 associated with the risk of Alzheimer’s disease N Engl J Med 2013 368 107 116 23150908 PMC3677583
  10. Kocher JP Quest DJ Duffy P Meiners MA Moore RM Rider D Hossain A Hart SN Dinu V The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation Bioinformatics 2014 30 1920 1922 24618464 PMC4071205
  11. Kohli MA Cukier HN Hamilton-Nelson KL Rolati S Kunkle BW Whitehead PL Zuchner SL Farrer LA Martin ER Beecham GW Haines JL Vance JM Cuccaro ML Gilbert JR Schellenberg GD Carney RM Pericak-Vance MA Segregation of a rare TTC3 variant in an extended family with late-onset Alzheimer disease Neurol Genet 2016 2 e41 27066578 PMC4817909
  12. Li B Leal SM Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data Am J Hum Genet 2008 83 311 321 18691683 PMC2842185
  13. Ma J Jiang T Tan L Yu JT TYROBP in Alzheimer’s disease Mol Neurobiol 2015 51 820 826 25052481
  14. McKenna A Hanna M Banks E Sivachenko A Cibulskis K Kernytsky A Garimella K Altshuler D Gabriel S Daly M DePristo MA The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data Genome Res 2010 20 1297 1303 20644199 PMC2928508
  15. McKhann GM Knopman DS Chertkow H Hyman BT Jack CR Jr Kawas CH Klunk WE Koroshetz WJ Manly JJ Mayeux R Mohs RC Morris JC Rossor MN Scheltens P Carrillo MC Thies B Weintraub S Phelps CH The diagnosis of dementia due to Alzheimer’s disease: recommendations from the National Institute on Aging-Alzheimer’s Association workgroups on diagnostic guidelines for Alzheimer’s disease Alzheimer’s & dementia: the journal of the Alzheimer’s Association 2011 7 263 269 PMC3312024 21514250
  16. Neumann H Daly MJ Variant TREM2 as risk factor for Alzheimer’s disease The New England journal of medicine 2013 368 182 184 23151315
  17. Nicolas G Wallon D Charbonnier C Quenez O Rousseau S Richard AC Rovelet-Lecrux A Coutant S Le Guennec K Bacq D Garnier JG Olaso R Boland A Meyer V Deleuze JF Munter HM Bourque G Auld D Montpetit A Lathrop M Guyant-Marechal L Martinaud O Pariente J Rollin-Sillaire A Pasquier F Le Ber I Sarazin M Croisile B Boutoleau-Bretonniere C Thomas-Anterion C Paquet C Sauvee M Moreaud O Gabelle A Sellal F Ceccaldi M Chamard L Blanc F Frebourg T Campion D Hannequin D Screening of dementia genes by whole-exome sequencing in early-onset Alzheimer disease: input and lessons Eur J Hum Genet 2015 PMC4930083 26242991
  18. Paradowska-Gorycka A Jurkowska M Structure, expression pattern and biological activity of molecular complex TREM-2/DAP12 Hum Immunol 2013 74 730 737 23459077
  19. Piccio L Deming Y Del-Aguila JL Ghezzi L Holtzman DM Fagan AM Fenoglio C Galimberti D Borroni B Cruchaga C Cerebrospinal fluid soluble TREM2 is higher in Alzheimer disease and associated with mutation status Acta Neuropathol 2016 PMC4867123 26754641
  20. Pottier C Hannequin D Coutant S Rovelet-Lecrux A Wallon D Rousseau S Legallic S Paquet C Bombois S Pariente J Thomas-Anterion C Michon A Croisile B Etcharry-Bouyx F Berr C Dartigues JF Amouyel P Dauchel H Boutoleau-Bretonniere C Thauvin C Frebourg T Lambert JC Campion D High frequency of potentially pathogenic SORL1 mutations in autosomal dominant early-onset Alzheimer disease Mol Psychiatry 2012 17 875 879 22472873
  21. Pottier C Wallon D Rousseau S Rovelet-Lecrux A Richard AC Rollin-Sillaire A Frebourg T Campion D Hannequin D TREM2 R47H variant as a risk factor for early-onset Alzheimer’s disease J Alzheimers Dis 2013 35 45 49 23380991
  22. van Blitterswijk M DeJesus-Hernandez M Rademakers R How do C9ORF72 repeat expansions cause amyotrophic lateral sclerosis and frontotemporal dementia: can we learn from other noncoding repeat expansion disorders? Curr Opin Neurol 2012 25 689 700 23160421 PMC3923493
  23. Wojtas A Heggeli KA Finch N Baker M Dejesus-Hernandez M Younkin SG Dickson DW Graff-Radford NR Rademakers R C9ORF72 repeat expansions and other FTD gene mutations in a clinical AD patient series from Mayo Clinic Am J Neurodegener Dis 2012 1 107 118 23383383 PMC3560455
  24. Wu Y Matsui H Tomizawa K Amphiphysin I and regulation of synaptic vesicle endocytosis Acta Med Okayama 2009 63 305 323 20035287
  25. Zhang B Gaiteri C Bodea LG Wang Z McElwee J Podtelezhnikov AA Zhang C Xie T Tran L Dobrin R Fluder E Clurman B Melquist S Narayanan M Suver C Shah H Mahajan M Gillis T Mysore J MacDonald ME Lamb JR Bennett DA Molony C Stone DJ Gudnason V Myers AJ Schadt EE Neumann H Zhu J Emilsson V Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer’s disease Cell 2013 153 707 720 23622250 PMC3677161
  26. Zhong L Chen XF Zhang ZL Wang Z Shi XZ Xu K Zhang YW Xu H Bu G DAP12 Stabilizes the C-terminal Fragment of the Triggering Receptor Expressed on Myeloid Cells-2 (TREM2) and Protects against LPS-induced Pro-inflammatory Response J Biol Chem 2015 290 15866 15877 25957402 PMC4505493

Cited by

Sorted by citations

Authors
Pottier, C., Ravenscroft, T. A., Brown, P. H., Finch, N. A., Baker, M., Parsons, M., Asmann, Y. W., Ren, Y., Christopher, E., Levitch, D., van Blitterswijk, M., Cruchaga, C., Campion, D., Nicolas, G., Richard, A.-C., Guerreiro, R., Bras, J. T., Zuchner, S., Gonzalez, M. A., Bu, G., Younkin, S., Knopman, D. S., Josephs, K. A., Parisi, J. E., Petersen, R. C., Ertekin-Taner, N., Graff-Radford, N. R., Boeve, B. F., Dickson, D. W., & Rademakers, R.
Affiliations
  • Mayo Clinic (US)
  • Washington University in St. Louis (US)
  • Inserm (FR)
  • UCL Queen Square Institute of Neurology (GB)
  • University of Miami (US)
Corresponding author
Rademakers, Rosa
Venue
Neurobiology of Aging
Publisher
Elsevier BV
Published
2016-12
Volume
48
Pages
222.e9-222.e15
ISSN
0197-4580 (ISSN-L)
OpenAlex
W2488417892
Cited by
94
References
9
Citations by year
2026: 1 · 2025: 4 · 2024: 6 · 2023: 12 · 2022: 12 · 2021: 18 · 2020: 11 · 2019: 6 · 2018: 9 · 2017: 15
FWCI
8.05
Type
journal article
Language
en
Open access
Locations
  • Neurobiology of Aging (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
  • UCL Discovery (University College London) (submittedVersion)
  • Rare & Special e-Zone (The Hong Kong University of Science and Technology) (submittedVersion)
Funders
US National Institutes of Health (P50-AG016574, R01-NS080882, R01-AG032990, R01-NS080820, U01-AG046139, R21-AG048101, RF1-AG051504)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
  • Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
Keywords
early-onset Alzheimer's disease, TYROBP, rare variants, TREM2, candidate genes, genetic risk, family history of Alzheimer's disease, exome sequencing
MeSH terms
Adult, Aged, Aged, 80 and over, Alzheimer Disease, Female, HeLa Cells, Humans, Male, Membrane Glycoproteins, Membrane Proteins, Middle Aged, Mutation, Receptors, Immunologic, Genetic Variation, Cohort Studies, Down-Regulation, Gene Expression, Sequence Analysis, Adaptor Proteins, Signal Transducing, Genetic Association Studies, Exome

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review