Cited by 83Advanced Neuroimaging Techniques and ApplicationsFunctional Brain Connectivity StudiesCerebrovascular and genetic disorders

Fiber clustering versus the parcellation-based connectome

Open access
O'Donnell, Lauren J., Golby, Alexandra J., Westin, Carl-Fredrik·2013·NeuroImage

Abstract

We compare two strategies for modeling the connections of the brain's white matter: fiber clustering and the parcellation-based connectome. Both methods analyze diffusion magnetic resonance imaging fiber tractography to produce a quantitative description of the brain's connections. Fiber clustering is designed to reconstruct anatomically-defined white matter tracts, while the parcellation-based white matter segmentation enables the study of the brain as a network. From the perspective of white matter segmentation, we compare and contrast the goals and methods of the parcellation-based and clustering approaches, with special focus on reviewing the field of fiber clustering. We also propose a third category of new hybrid methods that combine the aspects of parcellation and clustering, for joint analysis of connection structure and anatomy or function. We conclude that these different approaches for segmentation and modeling of the white matter can advance the neuroscientific study of the brain's connectivity in complementary ways.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.neuroimage.2013.04.066

Cites

6 of 6 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 84

  1. [1]Anwander A Tittgemeyer M von Cramon DY Friederici AD Knösche TR Connectivity-based parcellation of broca’s area Cerebral Cortex 2007 17 4 816 825 16707738
  2. [2]Basser P Pajevic S Pierpaoli C Duda J Aldroubi A In vivo fiber tractography using DT–MRI data Magnetic Resonance in Medicine 2000 44 625 632 11025519
  3. [3]Basser PJ Mattiello J LeBihan D MR diffusion tensor spectroscopy and imaging Biophysical Journal 1994 66 259 267 8130344 PMC1275686
  4. [4]Bastiani M Shah N Goebel R Roebroeck A Human cortical connectome reconstruction from diffusion weighted MRI: the effect of tractography algorithm NeuroImage 2012 62 3 1732 1749 22699045
  5. [5]Behrens T Johansen-Berg H Woolrich M Smith S Wheeler-Kingshott C Boulby P Barker G Sillery E Sheehan K Ciccarelli O Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging Nature neuroscience 2003a 6 7 750 757 12808459
  6. [6]Behrens T Woolrich M Jenkinson M Johansen-Berg H Nunes R Clare S Matthews P Brady J Smith S Characterization and propagation of uncertainty in diffusion-weighted MR imaging Magnetic Resonance in Medicine 2003b 50 5 1077 1088 14587019
  7. [7]Bernal B Ardila A The role of the arcuate fasciculus in conduction aphasia Brain 2009 132 9 2309 2316 19690094
  8. [8]Brun A Knutsson H Park H Shenton M Westin C Clustering fiber traces using normalized cuts Medical Image Computing and Computer-Assisted Intervention–MICCAI 2004 2004 368 375 PMC3296487 20209048
  9. [10]Bullmore E Sporns O Complex brain networks: graph theoretical analysis of structural and functional systems Nature Reviews Neuroscience 2009 10 3 186 198 19190637
  10. [11]Cammoun L Gigandet X Meskaldji D Thiran J Sporns O Do K Maeder P Meuli R Hagmann P Mapping the human connectome at multiple scales with diffusion spectrum MRI Journal of neuroscience methods 2011 22001222
  11. [12]Catani M Bodi I Dell’Acqua F Comment on ñThe Geometric Structure of the Brain Fiber Pathwaysî Science 2012 337 6102 1605 23019632
  12. [14]Clarkson MJ Malone IB Modat M Leung KK Ryan N Alexander DC Fox NC Ourselin S A framework for using diffusion weighted imaging to improve cortical parcellation Medical Image Computing and Computer-Assisted Intervention–MICCAI 2010 2010 Springer 534 541 20879272
  13. [15]Conturo TE Lori NF Cull TS Akbuda E Snyder AZ Shimony JS McKinstry RC Burton H Raichle AE Tracking neuronal fiber pathways in the living human brain Neurobiology 1999 96 10422 10427 PMC17904 10468624
  14. [16]Corouge I Gouttard S Gerig G Towards a shape model of white matter fiber bundles using diffusion tensor MRI Biomedical Imaging: Nano to Macro, 2004 2004 IEEE International Symposium on. IEEE 344 347
  15. [17]Damoiseaux J Greicius M Greater than the sum of its parts: a review of studies combining structural connectivity and resting-state functional connectivity Brain Structure and Function 2009 213 6 525 533 19565262
  16. [18]Desikan RS Ségonne F Fischl B Quinn BT Dickerson BC Blacker D Buckner RL Dale AM Maguire RP Hyman BT An automated labeling system for subdividing the human cerebral cortex on mri scans into gyral based regions of interest Neuroimage 2006 31 3 968 980 16530430
  17. [19]Diehl B Piao Z Tkach J Busch R LaPresto E Najm I Bingaman B Duncan J Lüders H Cortical stimulation for language mapping in focal epilepsy: Correlations with tractography of the arcuate fasciculus Epilepsia 2010 51 4 639 646 20002151
  18. [20]Ding Z Gore J Anderson A Classification and quantification of neuronal fiber pathways using diffusion tensor MRI Magnetic Resonance in Medicine 2003 49 4 716 721 12652543
  19. [22]Fischl B Van Der Kouwe A Destrieux C Halgren E Ségonne F Salat DH Busa E Seidman LJ Goldstein J Kennedy D Automatically parcellating the human cerebral cortex Cerebral Cortex 2004 14 1 11 22 14654453
  20. [23]Frey S Campbell J Pike G Petrides M Dissociating the human language pathways with high angular resolution diffusion fiber tractography The Journal of Neuroscience 2008 28 45 11435 11444 18987180 PMC6671318
  21. [24]Ge B Guo L Zhang T Hu X Han J Liu T Resting state fMRI-guided fiber clustering: Methods and applications Neuroinformatics 2012a 1 15 23065648 PMC3908549
  22. [25]Ge B Guo L Zhang T Zhu D Li K Hu X Han J Liu T Group-wise consistent fiber clustering based on multimodal connectional and functional profiles Medical Image Computing and Computer-Assisted Intervention–MICCAI 2012 2012b 485 492 23286166
  23. [26]Gerig G Gouttard S Corouge I Analysis of brain white matter via fiber tract modeling Engineering in Medicine and Biology Society, 2004. IEMBS’04 2004 26th Annual International Conference of the IEEE. Vol. 2. IEEE 4421 4424 17271286
  24. [27]Gong G He Y Concha L Lebel C Gross D Evans A Beaulieu C Mapping anatomical connectivity patterns ofhuman cerebral cortex using in vivo diffusion tensor imaging tractography Cerebral Cortex 2009 19 3 524 536 18567609 PMC2722790
  25. [28]Goodlett C Fletcher P Gilmore J Gerig G Group analysis of DTI fiber tract statistics with application to neurodevelopment Neuroimage 2009 45 1 S133 S142 19059345 PMC2727755
  26. [29]Gray H Lea Febiger Gray’s Anatomy 1918 20th Edition online edition: bartelby.com, 2000.
  27. [30]Greicius M Supekar K Menon V Dougherty R Resting-state functional connectivity reflects structural connectivity in the default mode network Cerebral Cortex 2009 19 1 72 78 18403396 PMC2605172
  28. [31]Guevara P Duclap D Poupon C Marrakchi-Kacem L Fillard P Lebihan D Leboyer M Houenou J Mangin J Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas NeuroImage 2012 22414992
  29. [34]Hagler D Jr Ahmadi M Kuperman J Holland D McDonald C Halgren E Dale A Automated white-matter tractography using a probabilistic diffusion tensor atlas: Application to temporal lobe epilepsy Human brain mapping 2009 30 5 1535 1547 18671230 PMC2754725
  30. [36]Hagmann P Kurant M Gigandet X Thiran P Wedeen V Meuli R Thiran J Mapping human whole-brain structural networks with diffusion MRI PLoS One 2007 2 7 e597 17611629 PMC1895920
  31. [37]He Y Evans A Graph theoretical modeling of brain connectivity Current opinion in neurology 2010 23 4 341 350 20581686
  32. [38]Honey C Sporns O Cammoun L Gigandet X Thiran J Meuli R Hagmann P Predicting human resting-state functional connectivity from structural connectivity Proceedings of the National Academy of Sciences 2009 106 6 2035 2040 PMC2634800 19188601
  33. [40]Jin Y Shi Y Zhan L Li J de Zubicaray G McMahon K Martin N Wright M Thompson P Automatic population hardi white matter tract clustering by label fusion of multiple tract atlases Multimodal Brain Image Analysis 2012 147 156 PMC4508862 26207263
  34. [41]Jonasson L Hagmann P Thiran J Wedeen V Fiber tracts of high angular resolution diffusion MRI are easily segmented with spectral clustering International Society for Magnetic Resonance in Medicine 2005 Vol. 24 1127 1137
  35. [43]Jones DK Simmons A Williams SCR Horsfield MA Non-invasive assesment of axonal fiber connectivity in the human brain via diffusion tensor MRI Magnetic Resonance in Medicine 1999 42 37 41 10398948
  36. [44]Klein JC Behrens TE Robson MD Mackay CE Higham DJ Johansen-Berg H Connectivity-based parcellation of human cortex using diffusion mri: establishing reproducibility, validity and observer independence in ba 44/45 and sma/pre-sma Neuroimage 2007 34 1 204 211 17023184
  37. [45]Lazar M Weinstein D Tsuruda J Hasan K Arfanakis K Meyerand M Badie B Rowley H Haughton V Field A White matter tractography using diffusion tensor deflection Human brain mapping 2003 18 4 306 321 12632468 PMC6871932
  38. [46]Leclercq D Duffau H Delmaire C Capelle L Gatignol P Ducros M Chiras J Lehéricy S Comparison of diffusion tensor imaging tractography of language tracts and intraoperative subcortical stimulations Journal of neurosurgery 2010 112 3 503 511 19747052
  39. [47]Li H Xue Z Guo L Liu T Hunter J Wong S A hybrid approach to automatic clustering of white matter fibers NeuroImage 2010 49 2 1249 19683061
  40. [48]Maddah M Grimson W Warfield S Wells W A unified framework for clustering and quantitative analysis of white matter fiber tracts Medical image analysis 2008a 12 2 191 18180197 PMC2615202
  41. [49]Maddah M Mewes A Haker S Grimson W Warfield S Automated atlas-based clustering of white matter fiber tracts from DTMRI Medical Image Computing and Computer-Assisted Intervention–MICCAI 2005 2005 188 195 16685845
  42. [50]Maddah M Miller J Sullivan E Pfefferbaum A Rohlfing T Sheet-like white matter fiber tracts: representation, clustering, and quantitative analysis Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011 2011 191 199 PMC3287070 21995029
  43. [51]Maddah M Zollei L Grimson W Wells W Modeling of anatomical information in clustering of white matter fiber trajectories using dirichlet distribution Computer Vision and Pattern Recognition Workshops, 2008. CVPRW’08 2008b IEEE Computer Society Conference on. IEEE 1 7 PMC3101585 21625356
  44. [52]Malcolm J Shenton M Rathi Y Filtered multitensor tractography Medical Imaging, IEEE Transactions on 2010 29 9 1664 1675 PMC3045040 20805043
  45. [53]Moberts B Vilanova A van Wijk J Evaluation of fiber clustering methods for diffusion tensor imaging Visualization, 2005. VIS 05. IEEE. IEEE 2005 65 72
  46. [54]Mori S Crain B Chacko V van Zijl P Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging Ann Neurol 1999 45 265 269 9989633
  47. [55]Nolte J The Human Brain An Introduction to Its Functional Anatomy 2002 Mosby Inc.
  48. [56]O’Donnell L Kubicki M Shenton M Dreusicke M Grimson W Westin C A method for clustering white matter fiber tracts American Journal of Neuroradiology 2006 27 5 1032 1036 16687538 PMC2768142
  49. [57]O’Donnell L Rigolo L Norton I Wells W III Westin C Golby A fMRI-DTI modeling via landmark distance atlasesfor prediction and detection of fiber tracts NeuroImage 2012 60 1 456 470 22155376 PMC3423975
  50. [58]O’Donnell L Westin C White matter tract clustering and correspondence in populations Medical Image Computing and Computer-Assisted Intervention–MICCAI 2005 2005 140 147 16685839
  51. [59]O’Donnell L Westin C Automatic tractography segmentation using a high-dimensional white matter atlas Medical Imaging, IEEE Transactions on 2007 26 11 1562 1575 18041271
  52. [60]O’Donnell L Westin C Golby A Tract-based morphometry for white matter group analysis NeuroImage 2009 45 3 832 844 19154790 PMC2768362
  53. [61]Prasad G Jahanshad N Aganj I Lenglet C Sapiro G Toga A Thompson P Atlas-based fiber clustering for multi-subject analysis of high angular resolution diffusion imaging tractography Biomedical Imaging: From Nano to Macro, 2011 2011 IEEE International Symposium on. IEEE 276 280 PMC4232949 25404992
  54. [62]Propper R OÕDonnell L Whalen S Tie Y Norton I Suarez R Zollei L Radmanesh A Golby A A combined fMRI and DTI examination of functional language lateralization and arcuate fasciculus structure: Effects of degree versus direction of hand preference Brain and cognition 2010 73 2 85 92 20378231 PMC2880216
  55. [63]Rilling J Glasser M Preuss T Ma X Zhao T Hu X Behrens T The evolution of the arcuate fasciculus revealed with comparative DTI Nature neuroscience 2008 11 4 426 428 18344993
  56. [64]Roca P Rivière D Guevara P Poupon C Mangin J-F Tractography-based parcellation of the cortex using a spatially-informed dimension reduction of the connectivity matrix Medical Image Computing and Computer-Assisted Intervention–MICCAI 2009 2009 Springer 935 942 20426078
  57. [65]Roca P Tucholka A Riviere D Guevara P Poupon C Mangin J-F Inter-subject connectivity-based parcellation of a patch of cerebral cortex Medical Image Computing and Computer-Assisted Intervention–MICCAI 2010 2010 Springer 347 354 20879334
  58. [66]Smith S Jenkinson M Johansen-Berg H Rueckert D Nichols T Mackay C Watkins K Ciccarelli O Cader M Matthews P Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data NeuroImage 2006 31 4 1487 1505 16624579
  59. [67]Smith S Miller K Salimi-Khorshidi G Webster M Beckmann C Nichols T Ramsey J Woolrich M Network modelling methods for fmri Neuroimage 2011 54 2 875 891 20817103
  60. [68]Sporns O The human connectome: a complex network Annalsof the New York Academy of Sciences 2011 1224 1 109 125 21251014
  61. [69]Sporns O Tononi G Kötter R The human connectome: a structural description of the human brain PLoS computational biology 2005 1 4 e42 16201007 PMC1239902
  62. [70]Toga A Clark K Thompson P Shattuck D Van Horn J Mapping the human connectome Neurosurgery 2012 71 1 1 5 22705717 PMC3555558
  63. [71]Toga A Thompson P Mori S Amunts K Zilles K Towards multimodal atlases of the human brain Nature Reviews Neuroscience 2006 7 12 952 966 PMC3113553 17115077
  64. [72]Tomassini V Jbabdi S Klein JC Behrens TE Pozzilli C Matthews PM Rushworth MF Johansen-Berg H Diffusion-weighted imaging tractography-based parcellation of the human lateral premotor cortex identifies dorsal and ventral subregions with anatomical and functional specializations The Journal of neuroscience 2007 27 38 10259 10269 17881532 PMC6672665
  65. [73]Tsai A Westin C Hero A Willsky A Fiber tract clustering on manifolds with dual rooted-graphs Computer Vision and Pattern Recognition, 2007. CVPR’07 2007 IEEE Conference on. IEEE 1 6
  66. [74]Visser E Nijhuis E Buitelaar J Zwiers M Partition-based mass clustering of tractography streamlines Neuroimage 2011 54 1 303 312 20673849
  67. [75]Voineskos A Farzan F Barr M Lobaugh N Mulsant B Chen R Fitzgerald P Daskalakis Z The role of the corpus callosum in transcranial magnetic stimulation induced interhemispheric signal propagation Biological psychiatry 2010a 68 9 825 831 20708172
  68. [76]Voineskos A Lobaugh N Bouix S Rajji T Miranda D Kennedy J Mulsant B Pollock B Shenton M Diffusion tensor tractography findings in schizophrenia across the adult lifespan Brain 2010b 133 5 1494 1504 20237131 PMC2859148
  69. [77]Voineskos A OÕDonnell L Lobaugh N Markant D Ameis S Niethammer M Mulsant B Pollock B Kennedy J Westin C Shenton M Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography Neuroimage 2009 45 2 370 19159690 PMC2646811
  70. [78]Voineskos A Rajji T Lobaugh N Miranda D Shenton M Kennedy J Pollock B Mulsant B Age-related decline in white matter tract integrity and cognitive performance: A DTI tractography and structural equation modeling study Neurobiology of aging 2012 33 1 21 34 20363050 PMC2945445
  71. [79]Wang Q Yap P Wu G Shen D Application of neuroanatomical features to tractography clustering Human Brain Mapping 2012 PMC4154701 22461221
  72. [80]Wang X Grimson W Westin C Tractography segmentation using a hierarchical dirichlet processes mixture model NeuroImage 2011a 54 1 290 302 20678578 PMC2962770
  73. [81]Wang Y Gupta A Liu Z Zhang H Escolar M Gilmore J Gouttard S Fillard P Maltbie E Gerig G DTI registration in atlas based fiber analysis of infantile krabbe disease NeuroImage 2011b 55 4 1577 1586 21256236 PMC3062693
  74. [82]Wassermann D Bloy L Kanterakis E Verma R Deriche R Unsupervised white matter fiber clustering and tract probability map generation: Applications of a gaussian process framework for white matter fibers NeuroImage 2010a 51 1 228 20079439 PMC2847030
  75. [83]Wassermann D Kanterakis E Gur R Deriche R Verma R Diffusion-based population statistics using tract probability maps Medical Image Computing and Computer-Assisted Intervention–MICCAI 2010 2010b 631 639 20879284
  76. [84]Wedeen V Rosene D Wang R Dai G Mortazavi F Hagmann P Kaas J Tseng W The geometric structure of the brain fiber pathways Science 2012 335 6076 1628 1634 22461612 PMC3773464
  77. [85]Weinstein D Kindlmann G Lundberg E Tensorlines: Advection-diffusion based propagation through diffusion tensor fields Proceedings of IEEE Visualization ’99 1999 249 253
  78. [86]Westin C-F Maier SE Mamata H Nabavi A Jolesz FA Kikinis R Processing and visualization of diffusion tensor MRI Medical Image Analysis 2002 6 2 93 108 12044998
  79. [87]Xia Y Turken A Whitfield-Gabrieli S Gabrieli J Knowledge-based classification of neuronal fibers in entire brain **Medical Image Computing and Computer-Assisted Intervention–MICCAI 2005 2005 205 212 16685847
  80. [88]Yendiki A Panneck P Srinivasan P Stevens A Zöllei L Augustinack J Wang R Salat D Ehrlich S Behrens T Jbabdi S Gollub R Fischl B Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy Frontiers in neuroinformatics 2011 5 PMC3193073 22016733
  81. [89]Yushkevich P Zhang H Simon T Gee J Structure-specific statistical mapping of white matter tracts NeuroImage 2008 41 2 448 461 18407524 PMC2519052
  82. [90]Zhang S Correia S Laidlaw D Identifying white-matter fiber bundles in dti data using an automated proximity-based fiber-clustering method Visualization and Computer Graphics, IEEE Transactions on 2008 14 5 1044 1053 PMC2757786 18599916
  83. [92]Zhu D Li K Faraco C Deng F Zhang D Guo L Miller L Liu T Optimization of functional brain rois via maximization of consistency of structural connectivity profiles Neuroimage 2012 59 2 1382 1393 21875672 PMC3230712
  84. [93]Ziyan U Sabuncu M Grimson W Westin C Consistency clustering: a robust algorithm for group-wise registration, segmentation and automatic atlas construction in diffusion MRI International journal of computer vision 2009 85 3 279 290 20442792 PMC2862392

Cited by

Sorted by citations

Authors
O'Donnell, L. J., Golby, A. J., & Westin, C.-F.
Affiliations
Brigham and Women's Hospital (US)
Venue
NeuroImage
Publisher
Elsevier BV
Published
2013-10
Volume
80
Pages
283-289
ISSN
1053-8119 (ISSN-L)
OpenAlex
W2016086132
Cited by
83
References
6
Citations by year
2026: 2 · 2025: 1 · 2024: 2 · 2023: 4 · 2022: 4 · 2021: 3 · 2020: 11 · 2019: 7 · 2018: 10 · 2017: 10 · 2016: 8 · 2015: 10 · 2014: 9 · 2013: 2
FWCI
7.50
Type
journal article
Language
en
Open access
Locations
  • NeuroImage (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
  • Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
Funders
NIH (R21 CA156943, P41 EB015902, P41 RR019703, R01 MH074794, R01 MH092862, R21 NS075728)
Topics
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
  • Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
  • Health Sciences › Medicine › Neurology › Cerebrovascular and genetic disorders
Keywords
fiber clustering, white matter segmentation, fiber tractography, brain connectivity, white matter tracts, brain network modeling, hybrid segmentation, diffusion MRI
MeSH terms
Brain, Humans, Image Interpretation, Computer-Assisted, Models, Anatomic, Models, Neurological, Nerve Fibers, Myelinated, Nerve Net, Diffusion Tensor Imaging, Connectome

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review