Robust clustering of massive tractography datasets

Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data

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Watersheds in digital spaces: an efficient algorithm based on immersion simulations

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Hierarchical Clustering Schemes

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Diffusion tensor imaging: Concepts and applications

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Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution

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Perisylvian language networks of the human brain

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Reproducibility of quantitative tractography methods applied to cerebral white matter

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A diffusion tensor imaging tractography atlas for virtual in vivo dissections.

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Inferring microstructural features and the physiological state of tissues from diffusion‐weighted images

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Tract probability maps in stereotaxic spaces: Analyses of white matter anatomy and tract-specific quantification

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Reduction of eddy‐current‐induced distortion in diffusion MRI using a twice‐refocused spin echo

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MRI Atlas of Human White Matter

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Medical Image Computing and Computer Assisted Intervention – MICCAI 2018

Frangi, A. F., Schnabel, J. A., Davatzikos, C. A., Alberola-López, C., & Fichtinger, G. (2018) · Lecture notes in computer science · doi:10.1007/978-3-030-00937-3 · Cited by 1,049 · see citing works

MRI atlas of human white matter

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Use of watersheds in contour detection

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Regularized, fast, and robust analytical Q-ball imaging

Descoteaux, M., Angelino, E., Fitzgibbons, S., & Deriche, R. (2007) · Magnetic Resonance in Medicine · doi:10.1002/mrm.21277 · Cited by 850 · see citing works

Clustering Fiber Traces Using Normalized Cuts

Brun, A., Knutsson, H. E., Park, H., Shenton, M. E., & Westin, C. (2004) · Lecture notes in computer science · doi:10.1007/b100265 · Cited by 785 · see citing works

Deterministic and probabilistic tractography based on complex fibre orientation distributions

Descoteaux, M., Deriche, R., Knosche, T. R., & Anwander, A. (2009) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2008.2004424 · Cited by 698 · see citing works

Human brain white matter atlas: Identification and assignment of common anatomical structures in superficial white matter

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Deformable registration of diffusion tensor MR images with explicit orientation optimization

ZHANG, H., Yushkevich, P. A., Alexander, D. C., & Gee, J. C. (2006) · Medical Image Analysis · doi:10.1016/j.media.2006.06.004 · Cited by 461 · see citing works

Automatic Tractography Segmentation Using a High-Dimensional White Matter Atlas

O’Donnell, L. J., & Westin, C. (2007) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2007.906785 · Cited by 402 · see citing works

Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization

Zhang, H. G., Yushkevich, P. A., & Gee, J. C. (2005) · Lecture notes in computer science · doi:10.1007/11566465_22 · Cited by 389 · see citing works

Atlas-based segmentation of white matter tracts of the human brain using diffusion tensor tractography and comparison with classical dissection

Lawes, I. N. C., Barrick, T. R., Murugam, V., Spierings, N. M. K., Evans, D. R., Song, M., & Clark, C. A. (2007) · NeuroImage · doi:10.1016/j.neuroimage.2007.06.041 · Cited by 369 · see citing works

Age effects on diffusion tensor magnetic resonance imaging tractography measures of frontal cortex connections in schizophrenia

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New diffusion phantoms dedicated to the study and validation of high‐angular‐resolution diffusion imaging (HARDI) models

Poupon, C., Rieul, B., Kezele, I., Perrin, M., Poupon, F., & Mangin, J. (2008) · Magnetic Resonance in Medicine · doi:10.1002/mrm.21789 · Cited by 198 · see citing works

Towards a shape model of white matter fiber bundles using diffusion tensor MRI

Corouge, I., Gouttard, S., & Gerig, G. (2005) · doi:10.1109/isbi.2004.1398545 · Cited by 179 · see citing works

Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis

COROUGE, I., FLETCHER, P., JOSHI, S., GOUTTARD, S., & GERIG, G. (2006) · Medical Image Analysis · doi:10.1016/j.media.2006.07.003 · Cited by 177 · see citing works

Structure-specific statistical mapping of white matter tracts

Yushkevich, P. A., Zhang, H. G., Simon, T. J., & Gee, J. C. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.01.013 · Cited by 166 · see citing works

Classification and quantification of neuronal fiber pathways using diffusion tensor MRI

Ding, Z., Gore, J. C., & Anderson, A. W. (2003) · Magnetic Resonance in Medicine · doi:10.1002/mrm.10415 · Cited by 159 · see citing works

Unsupervised white matter fiber clustering and tract probability map generation: Applications of a Gaussian process framework for white matter fibers

Wassermann, D., Bloy, L., Kanterakis, E., Verma, R., & Rachid Deriche, B. (2010) · NeuroImage · doi:10.1016/j.neuroimage.2010.01.004 · Cited by 142 · see citing works

A method for clustering white matter fiber tracts.

O’Donnell, L. J., Kubicki, M. R., Shenton, M. E., Dreusicke, M., Grimson, W. E. L., & Westin, C. (2006) · PubMed Central · Cited by 136 · see citing works

Fiber Tracking in q-Ball Fields Using Regularized Particle Trajectories

Perrin, M., Poupon, C., Cointepas, Y., Rieul, B., Narly Golestani, A., Pallier, C., Rivière, D., Constantinesco, A., Bihan, D. L., & Mangin, J. (2005) · Lecture notes in computer science · doi:10.1007/11505730_5 · Cited by 135 · see citing works

Analysis of brain white matter via fiber tract modeling

Gerig, G., Gouttard, S., & Corouge, I. (2005) · doi:10.1109/iembs.2004.1404229 · Cited by 112 · see citing works

Impact of Rician Adapted Non-Local Means Filtering on HARDI

Descoteaux, M., Wiest-Daesslé, N., Prima, S., Barillot, C., & Rachid Deriche, B. (2008) · Lecture notes in computer science · doi:10.1007/978-3-540-85990-1_15 · Cited by 99 · see citing works

DT-REFinD: Diffusion Tensor Registration With Exact Finite-Strain Differential

Yeo, B. T. T., Vercauteren, T. K., Fillard, P., Peyrat, J., Pennec, X., Golland, P., Ayache, N., & Olivier Clatz, A. (2009) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2009.2025654 · Cited by 89 · see citing works

Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI

Maddah, M., Mewes, A. U. J., Haker, S. J., Grimson, W. E. L., & Warfield, S. K. (2005) · Lecture notes in computer science · doi:10.1007/11566465_24 · Cited by 82 · see citing works

A hybrid approach to automatic clustering of white matter fibers

Li, H., Xue, Z., Guo, L., Liu, T., Hunter, J. V., & Wong, S. T. C. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.08.017 · Cited by 76 · see citing works

Nonlinear Registration of Diffusion MR Images Based on Fiber Bundles

Ziyan, U., Sabuncu, M. R., O’Donnell, L. J., & Westin, C. (2007) · Springer eBooks · doi:10.1007/978-3-540-75757-3_43 · Cited by 46 · see citing works

Diffusion Maps Clustering for Magnetic Resonance Q‐Ball Imaging Segmentation

Wassermann, D., Descoteaux, M., & Rachid Deriche, B. (2008) · International Journal of Biomedical Imaging · doi:10.1155/2008/526906 · Cited by 33 · see citing works

Connectivity‐Based Parcellation of the Cortical Mantle Usingq‐Ball Diffusion Imaging

Perrin, M., Cointepas, Y., Cachia, A., Poupon, C., Thirion, B., Rivière, D., Cathier, P., Kouby, V. E., Constantinesco, A., Bihan, D. L., et al. (2008) · International Journal of Biomedical Imaging · doi:10.1155/2008/368406 · Cited by 32 · see citing works

Shape Bottlenecks and Conservative Flow Systems

Mangin, J., Régis, J. M., & Frouin, V. (1996) · Cited by 29 · see citing works

MR Diffusion-Based Inference of a Fiber Bundle Model from a Population of Subjects

Kouby, V. E., Cointepas, Y., Poupon, C., Rivière, D., Narly Golestani, A., Poline, J.-B., Bihan, D. L., & Mangin, J. (2005) · Lecture notes in computer science · doi:10.1007/11566465_25 · Cited by 24 · see citing works

Tract-Based Morphometry

O’Donnell, L. J., Westin, C., & Golby, A. J. (2007) · Springer eBooks · doi:10.1007/978-3-540-75759-7_20 · Cited by 20 · see citing works

A Statistical Model of White Matter Fiber Bundles Based on Currents

Durrleman, S., Fillard, P., Pennec, X., Trouvé, A., & Ayache, N. (2009) · Lecture notes in computer science · doi:10.1007/978-3-642-02498-6_10 · Cited by 16 · see citing works

Inference of a HARDI Fiber Bundle Atlas Using a Two-Level Clustering Strategy

Guevara, P., Poupon, C., Rivière, D., Cointepas, Y., Marrakchi‐Kacem, L., Descoteaux, M., Fillard, P., Thirion, B., & Mangin, J. (2010) · Lecture notes in computer science · doi:10.1007/978-3-642-15705-9_67 · Cited by 10 · see citing works

Belief Propagation Based Segmentation of White Matter Tracts in DTI

Bazin, P., Bogovic, J., Reich, D. S., Prince, J. L., & Pham, D. L. (2009) · Lecture notes in computer science · doi:10.1007/978-3-642-04268-3_116 · Cited by 10 · see citing works

Mean q-Ball Strings Obtained by Constrained Procrustes Analysis with Point Sliding

Kezele, I., Poupon, C., Perrin, M., Cointepas, Y., Kouby, V. E., Poupon, F., & Mangin, J. (2008) · Lecture notes in computer science · doi:10.1007/978-3-540-85988-8_123 · Cited by 5 · see citing works

Tractography-based connectomes are dominated by false-positive connections

Maier-Hein, K. H., Neher, P., Houde, J.-C., Côté, M.-A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F.-C., Lin, Y.-C., Ji, Q., et al. (2016) · doi:10.1101/084137 · Cited by 1,361 · see citing works

The early development of brain white matter: a review of imaging studies in fetuses, newborns and infants

Dubois, J., Dehaene-Lambertz, G., Kulikova, S., Poupon, C., Hüppi, P. S., & Hertz-Pannier, L. (2014) · Neuroscience · doi:10.1016/j.neuroscience.2013.12.044 · Cited by 851 · see citing works

Short frontal lobe connections of the human brain

Catani, M., Dell’Acqua, F., Vergani, F., Malik, F., Hodge, H., Roy, P. K., Valabrègue, R., & de Schotten, M. T. (2011) · Cortex · doi:10.1016/j.cortex.2011.12.001 · Cited by 789 · see citing works

QuickBundles, a Method for Tractography Simplification

Garyfallidis, E., Brett, M., Correia, M., Williams, G. B., & Nimmo‐Smith, I. (2012) · Frontiers in Neuroscience · doi:10.3389/fnins.2012.00175 · Cited by 315 · see citing works

Altered structural connectivity of cortico-striato-pallido-thalamic networks in Gilles de la Tourette syndrome

Worbe, Y., Marrakchi‐Kacem, L., Lecomte, S., Valabrègue, R., Poupon, F., Guevara, P., Tucholka, A., Mangin, J., Vidailhet, M., Lehéricy, S., et al. (2014) · Brain · doi:10.1093/brain/awu311 · Cited by 257 · see citing works

Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas

Guevara, P., Duclap, D., Poupon, C., Marrakchi‐Kacem, L., Fillard, P., Bihan, D. L., Leboyer, M., Houenou, J., & Mangin, J. (2012) · NeuroImage · doi:10.1016/j.neuroimage.2012.02.071 · Cited by 210 · see citing works

From Phineas Gage and Monsieur Leborgne to H.M.: Revisiting Disconnection Syndromes

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Population-based tract-to-region connectome of the human brain and its hierarchical topology

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A Multicenter Tractography Study of Deep White Matter Tracts in Bipolar I Disorder

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Reproducibility of superficial white matter tracts using diffusion-weighted imaging tractography

Guevara, M., Román, C., Houenou, J., Duclap, D., Poupon, C., Mangin, J., & Guevara, P. (2016) · NeuroImage · doi:10.1016/j.neuroimage.2016.11.066 · Cited by 136 · see citing works

The CONNECT project: Combining macro- and micro-structure

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Automated white matter fiber tract identification in patients with brain tumors

O’Donnell, L. J., Suter, Y., Rigolo, L., Kahali, P., Zhang, F., Norton, I. H., Albi, A., Olubiyi, O. I., Meola, A., Essayed, W. I., et al. (2016) · NeuroImage Clinical · doi:10.1016/j.nicl.2016.11.023 · Cited by 129 · see citing works

Short parietal lobe connections of the human and monkey brain

Catani, M., Naianna, R., Beyh, A., Huynh, V., Requejo, F. D. S., Howells, H., Barrett, R. L. C., Aiello, M., Cavaliere, C., Dyrby, T. B., et al. (2017) · Cortex · doi:10.1016/j.cortex.2017.10.022 · Cited by 112 · see citing works

Intraoperative subcortical mapping of a language-associated deep frontal tract connecting the superior frontal gyrus to Broca's area in the dominant hemisphere of patients with glioma

Fujii, M., Maesawa, S., Motomura, K., Futamura, M., Hayashi, Y., Koba, I., & Wakabayashi, T. (2015) · Journal of neurosurgery · doi:10.3171/2014.10.jns14945 · Cited by 108 · see citing works

Mapping population-based structural connectomes

Zhang, Z., Descoteaux, M., Zhang, J., Girard, G., Chamberland, M., Dunson, D. B., Srivastava, A., & Hongtu Zhu, B. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2017.12.064 · Cited by 93 · see citing works

Using diffusion MRI data acquired with ultra-high gradient strength to improve tractography in routine-quality data

Maffei, C., Lee, C., Planich, M., Ramprasad, M., Ravi, N., Trainor, D., Urban, Z., Kim, M., Jones, R. J., Henin, A., et al. (2021) · NeuroImage · doi:10.1016/j.neuroimage.2021.118706 · Cited by 87 · see citing works

Tractostorm: The what, why, and how of tractography dissection reproducibility

Rheault, F., BENEDICTIS, A. D., Daducci, A., Maffei, C., Tax, C. M. W., Romascano, D., Caverzasi, E., Morency, F. C., Corrivetti, F., Pestilli, F., et al. (2020) · Human Brain Mapping · doi:10.1002/hbm.24917 · Cited by 87 · see citing works

Increased and Decreased Superficial White Matter Structural Connectivity in Schizophrenia and Bipolar Disorder

Ji, E., Guevara, P., Guevara, M., Grigis, A., Labra, N., Sarrazin, S., Hamdani, N., Bellivier, F., Delavest, M., Leboyer, M., et al. (2019) · Schizophrenia Bulletin · doi:10.1093/schbul/sbz015 · Cited by 84 · see citing works

On the cortical connectivity in the macaque brain: a comparison of diffusion tractography and histological tracing data

Girard, G., Caminiti, R., Battaglia-Mayer, A., St-Onge, E., Ambrosen, K. S., Eskildsen, S. F., Krug, K., Dyrby, T. B., Descoteaux, M., Thiran, J.-P., et al. (2020) · NeuroImage · doi:10.1016/j.neuroimage.2020.117201 · Cited by 83 · see citing works

Bundle‐specific tractography with incorporated anatomical and orientational priors

Rheault, F., St-Onge, E., Sidhu, J., Maier-Hein, K. H., Tzourio-mazoyer, N., Petit, L., & Descoteaux, M. (2019) · NeuroImage · doi:10.1016/j.neuroimage.2018.11.018 · Cited by 87 · see citing works

A hierarchical method for whole‐brain connectivity‐based parcellation

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Fiber clustering versus the parcellation-based connectome

O'Donnell, L. J., Golby, A. J., & Westin, C.-F. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2013.04.066 · Cited by 83 · see citing works

Superficial white matter as a novel substrate of age-related cognitive decline

Nazeri, A., Chakravarty, M. M., Rajji, T. K., Felsky, D., Rotenberg, D. J., Mason, M., Xu, L. N., Lobaugh, N. J., Mulsant, B. H., & Voineskos, A. N. (2015) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2015.02.022 · Cited by 78 · see citing works

Clustering of Whole-Brain White Matter Short Association Bundles Using HARDI Data

Román, C., Guevara, M., Valenzuela, R., Figueroa, M. E., Houenou, J., Duclap, D., Poupon, C., Mangin, J., & Guevara, P. (2017) · Frontiers in Neuroinformatics · doi:10.3389/fninf.2017.00073 · Cited by 77 · see citing works

The anatomy of the human frontal lobe

Catani, M. (2019) · Handbook of clinical neurology · doi:10.1016/b978-0-12-804281-6.00006-9 · Cited by 78 · see citing works

Differential Development of Human Brain White Matter Tracts

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AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity

Siless, V., Chang, K., Fischl, B. R., & Yendiki, A. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2017.10.058 · Cited by 69 · see citing works

Mapping Short Association Fibers in the Early Cortical Visual Processing Stream Using In Vivo Diffusion Tractography

Attar, F. M., Kirilina, E. P., Haenelt, D., Pine, K., Trampel, R., Edwards, L., & Weiskopf, N. (2020) · Cerebral Cortex · doi:10.1093/cercor/bhaa049 · Cited by 62 · see citing works

Organising white matter in a brain without corpus callosum fibres

Bénézit, A., Hertz‐Pannier, L., Dehaene‐Lambertz, G., Monzalvo, K., Germanaud, D., Duclap, D., Guevara, P., Mangin, J., Poupon, C., Moutard, M., et al. (2014) · Cortex · doi:10.1016/j.cortex.2014.08.022 · Cited by 62 · see citing works

Topographic Hub Maps of the Human Structural Neocortical Network

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Volumetric Ultrasound Localization Microscopy of the Whole Rat Brain Microvasculature

Heiles, B., Chavignon, A., Bergel, A., Hingot, V., Serroune, H., Maresca, D., Pezet, S., Pernot, M., Tanter, M., & Couture, O. (2022) · IEEE Open Journal of Ultrasonics Ferroelectrics and Frequency Control · doi:10.1109/ojuffc.2022.3214185 · Cited by 49 · see citing works

FFClust: Fast fiber clustering for large tractography datasets for a detailed study of brain connectivity

Vázquez, A., López-López, N., Sánchez, A., Houenou, J., Poupon, C., Mangin, J., Hernández, C., & Guevara, P. (2020) · NeuroImage · doi:10.1016/j.neuroimage.2020.117070 · Cited by 47 · see citing works

Filtering in tractography using autoencoders (FINTA)

Legarreta, J. H., Petit, L., Rheault, F., Theaud, G., Lemaire, C., Descoteaux, M., & Jodoin, P. (2021) · Medical Image Analysis · doi:10.1016/j.media.2021.102126 · Cited by 49 · see citing works

A comparison of three fiber tract delineation methods and their impact on white matter analysis

Sydnor, V. J., Rivas-Grajales, A. M., Lyall, A. E., Zhang, F., Bouix, S., Karmacharya, S., Shenton, M. E., Westin, C.-F., Makris, N., Wassermann, D., et al. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2018.05.044 · Cited by 43 · see citing works

Fast Automatic Segmentation of White Matter Streamlines Based on a Multi-Subject Bundle Atlas

Labra, N., Guevara, P., Duclap, D., Houenou, J., Poupon, C., Mangin, J., & Figueroa, M. E. (2016) · Neuroinformatics · doi:10.1007/s12021-016-9316-7 · Cited by 47 · see citing works

Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder

Wu, Y., Zhang, F., Makris, N., Ning, Y., Norton, I. H., She, S., Peng, H., Yogesh Rathi, A., Feng, Y., Wu, H., et al. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2018.06.019 · Cited by 46 · see citing works

Degree‐based statistic and center persistency for brain connectivity analysis

Yoo, K., Lee, P., Chung, M. K., Sohn, W. S., Chung, S. J., Na, D. L., Ju, D., & Jeong, Y. (2016) · Human Brain Mapping · doi:10.1002/hbm.23352 · Cited by 42 · see citing works

Functional linguistic specificity of the left frontal aslant tract for spontaneous speech fluency: Evidence from intraoperative language mapping

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Three-Dimensional Interactive and Stereotactic Human Brain Atlas of White Matter Tracts

Nowinski, W. L., Chua, B. C., Yang, G. L., & Guo, Q. (2011) · Neuroinformatics · doi:10.1007/s12021-011-9118-x · Cited by 43 · see citing works

Similar white matter but opposite grey matter changes in schizophrenia and high‐functioning autism

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Superficial white matter bundle atlas based on hierarchical fiber clustering over probabilistic tractography data

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Automatic White Matter Fiber Clustering Using Dominant Sets

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Sequential Hierarchical Agglomerative Clustering of White Matter Fiber Pathways

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Mapping Topographic Structure in White Matter Pathways with Level Set Trees

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Atlas-Guided Cluster Analysis of Large Tractography

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Atlas-Guided Cluster Analysis of Large Tractography Datasets

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