Cited by 275Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsSingle-cell and spatial transcriptomics

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Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

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Lister, Ryan, Gregory, Brian D, Ecker, Joseph R·2009·Current Opinion in Plant Biology

DOI 10.1016/j.pbi.2008.11.004PMC PMC2723731

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Abstract

The sudden availability of DNA sequencing technologies that rapidly produce vast amounts of sequence information has triggered a paradigm shift in genomics, enabling massively parallel surveying of complex nucleic acid populations. The diversity of applications to which these technologies have already been applied demonstrates the immense range of cellular processes and properties that can now be studied at the single-base resolution. These include genome resequencing and polymorphism discovery, mutation mapping, DNA methylation, histone modifications, transcriptome sequencing, gene discovery, alternative splicing identification, small RNA profiling, DNA-protein, and possibly even protein-protein interactions. Thus, these deep sequencing technologies offer plant biologists unprecedented opportunities to increase the understanding of the functions and dynamics of plant cells and populations.

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Authors: Lister, R., Gregory, B. D., & Ecker, J. R.
Affiliations: Salk Institute for Biological Studies (US)
Corresponding author: Ecker, Joseph R
ORCID: Lister, Ryan
Gregory, Brian D
Ecker, Joseph R
Venue: Current Opinion in Plant Biology
Publisher: Elsevier BV
Published: 2009-04
Volume: 12
Issue: 2
Pages: 107-118
ISSN: 1369-5266 (ISSN-L)
DOI: 10.1016/j.pbi.2008.11.004
PMC: PMC2723731
OpenAlex: W2067360806
Cited by: 274
References: 88
Citations by year: 2026: 1 · 2025: 1 · 2024: 3 · 2023: 2 · 2022: 5 · 2021: 7 · 2020: 5 · 2019: 8 · 2018: 13 · 2017: 16 · 2016: 13 · 2015: 17 · 2014: 30 · 2013: 29 · 2012: 29
FWCI: 3.16
Type: journal article
Language: en
Open access: green
www.ncbi.nlm.nih.gov
Licence: www.elsevier.com/tdm/userlicense/1.0/ (tdm)
Locations: Current Opinion in Plant Biology (publishedVersion)
PubMed (publishedVersion)
PubMed Central (acceptedVersion)
UWA Profiles and Research Repository (UWA) (submittedVersion)
Funders: Damon Runyon Cancer Research Foundation
Mary K. Chapman Foundation
National Institute of Environmental Health Sciences (U01ES017166)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
Keywords: next-generation sequencing, DNA sequencing technologies, genome resequencing, mutation mapping, DNA methylation, histone modifications, transcriptome sequencing, gene discovery, alternative splicing, small RNA profiling, protein-DNA interactions, plant genomics
MeSH terms: Polymorphism, Genetic, Sequence Analysis, DNA, Genome, Plant, RNA, Plant, DNA Methylation, Gene Expression Profiling

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