The DOI matches its Crossref record; 125 of the 125 references it cites were found in a registry or an index.
Prediction of RNA secondary structure by free energy minimization
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Citations
Cites
Identification of Novel Genes Coding for Small Expressed RNAs
Lagos-Quintana, M., Rauhut, R., Lendeckel, W., & Tuschl, T. (2001) · Science · doi:10.1126/science.1064921 · Cited by 4,956
Mathews, D. H., Sabina, J., Zuker, M., & Turner, D. H. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2700 · Cited by 3,795
Self-citationBiological sequence analysis probabilistic models of proteins and nucleic acids
Durbin, R. M., Eddy, S. R., Krogh, A., & Mitchison, G. (1998) · Cited by 3,565
Gilbert, W. (1986) · Nature · doi:10.1038/319618a0 · Cited by 2,721
Fast folding and comparison of RNA secondary structures
Hofacker, I. L., Fontana, W., Stadler, P. F., Bonhoeffer, L. S., Tacker, M., & Schuster, P. (1994) · Monatshefte f�r Chemie Chemical Monthly · doi:10.1007/bf00818163 · Cited by 2,306
Structure of the 30S ribosomal subunit
Wimberly, B. T., Brodersen, D. E., Clemons, W. M., Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T., & Ramakrishnan, V. (2000) · Nature · doi:10.1038/35030006 · Cited by 2,035
Gilbert, W. (1986) · Nature · Cited by 1,941
Compilation of tRNA sequences and sequences of tRNA genes
Sprinzl, M. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki012 · Cited by 1,914
Mathews, D. H., Disney, M. D., Childs, J. L., Schroeder, S. J., Zuker, M., & Turner, D. H. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0401799101 · Cited by 1,622
Self-citationThe equilibrium partition function and base pair binding probabilities for RNA secondary structure
McCaskill, J. S. (1990) · Biopolymers · doi:10.1002/bip.360290621 · Cited by 1,310
Cited by
Banáš, P., Hollas, D., Zgarbová, M., Jurečka, P., Orozco, M., Cheatham, T. E., Šponer, J., & Otyepka, M. (2010) · Journal of Chemical Theory and Computation · doi:10.1021/ct100481h · Cited by 373
RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries
Hafner, M., Renwick, N., Brown, M., Mihailović, A., Holoch, D., Lin, C., Pena, J. T. G., Nusbaum, J. D., Morozov, P., Ludwig, J., et al. (2011) · RNA · doi:10.1261/rna.2799511 · Cited by 320
Baird, S. D., Turcotte, M., Korneluk, R. G., & Holcik, M. (2006) · RNA · doi:10.1261/rna.157806 · Cited by 306
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search
Huang, L., Zhang, H., Deng, D., Zhao, K., Liu, K., Hendrix, D. A., & Mathews, D. H. (2019) · Bioinformatics · doi:10.1093/bioinformatics/btz375 · Cited by 207
“Widely used systems such as RNAstructure (Mathews and Turner, 2006), Vienna RNAfold (Lorenz etal.”
BackgroundMethodSelf-citationERNIE-RNA: an RNA language model with structure-enhanced representations
Yin, W., Zhang, Z., Zhang, S., He, L., Zhang, R., Jiang, R., Liu, G., Wang, J., Zhang, X., Qin, T., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64972-0 · Cited by 55
Metadata
- Authors
- Mathews, D. H., & Turner, D. H.
- Venue
- Current Opinion in Structural Biology
- Publisher
- Elsevier BV
- Published
- 2006-06
- Volume
- 16
- Issue
- 3
- Pages
- 270-278
- ISSN
- 0959-440X (ISSN-L)
- OpenAlex
- W2054697783
- Cited by
- 405
- References
- 125
- FWCI
- 1.69
- Type
- journal article
- Language
- en
- Open access
- closed
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- CoChat. (2026). Citation check: Prediction of RNA secondary structure by free energy minimization. https://app.cochat.ai/papers/10.1016/j.sbi.2006.05.010
- The paper
- Mathews, D. H., & Turner, D. H. (2006). Prediction of RNA secondary structure by free energy minimization. Current Opinion in Structural Biology. https://doi.org/10.1016/j.sbi.2006.05.010
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
