Principles of signaling pathway modulation for enhancing human naive pluripotency induction
Open accessPublished version of a preprint
Abstract
Abstract Different conditions have been devised to isolate MEK/ERK signalling independent human naïve pluripotent stem cells (PSCs) that are distinct from conventional primed PSCs and better correspond to pre-implantation developmental stages. While the naïve conditions described thus far endow human PSCs with different extents of naivety features, isolating human pluripotent cells that retain characteristics of ground state pluripotency while maintaining differentiation potential and genetic integrity, remains a major challenge. Here we engineer reporter systems that allow functional screening for conditions that can endow both the molecular and functional features expected from human naive pluripotency. We establish that simultaneous inhibition of SRC-NFκB, WNT/ßCATENIN and PKC signalling pathways is essential for enabling expansion of teratoma competent fully naïve human PSCs in defined or xeno-free conditions. Divergent signalling and transcriptional requirements for maintaining naïve pluripotency were found between mouse and human. Finally, we establish alternative naïve conditions in which MEK/ERK inhibition is substituted with inhibition for NOTCH/RBPj signalling, which allow obtaining alternative human naïve PSCs with diminished risk for loss of imprinting and deleterious global DNA hypomethylation. Our findings set a framework for the signalling foundations of human naïve pluripotency and may advance its utilization in future translational applications. Highlights of key findings Combined inhibition of SRC, WNT and PKC signaling consolidates human naïve pluripotency Stable expansion of DNA/RNA methylation-independent and TGF/ACTIVIN-independent human naïve PSCs Opposing roles for ACTIVIN and WNT/ßCATENIN signaling on mouse vs. human naive pluripotency 2i and MEK/ERKi independent alternative human naïve PSC conditions via inhibiting NOTCH/RBPj signaling
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
TCA cycle activity varies with PSC identity in human ESCs, which display glutamine independence and increased mitochondrial respiration upon conversion to a more naïve state.
“TCA cycle activity also varies with PSC identity in human ESCs, which display glutamine independence and increased mitochondrial respiration upon conversion to a more naïve state (215, 216).”
From Regulation and function of the mammalian tricarboxylic acid cycle (2023) · cites this paper as [215]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The ground state of embryonic stem cell self-renewal
Ying, Q.-L., Wray, J., Nichols, J., Batlle-Morera, L., Doble, B., Woodgett, J., Cohen, P., & Smith, A. (2008) · Nature · doi:10.1038/nature06968 · Cited by 3,442 · see citing works
Tankyrase inhibition stabilizes axin and antagonizes Wnt signalling
Huang, S.-M. A., Mishina, Y., Liu, S.-M., Cheung, A. K., Stegmeier, F., Michaud, G., Charlat, O., Wiellette, E., Zhang, Y., Wiessner, S., et al. (2009) · Nature · doi:10.1038/nature08356 · Cited by 2,077 · see citing works
Derivation of pluripotent epiblast stem cells from mammalian embryos
Brons, I. G. M., Smithers, L. E., Trotter, M. W. B., Rugg‐Gunn, P. J., Sun, B., Lopes, S. M. C. D. S., Howlett, S., Clarkson, A., Ährlund‐Richter, L., Pedersen, R. A., et al. (2007) · Nature · doi:10.1038/nature05950 · Cited by 2,007 · see citing works
Naive and Primed Pluripotent States
Nichols, J., & Smith, A. G. (2009) · Cell stem cell · doi:10.1016/j.stem.2009.05.015 · Cited by 1,835 · see citing works
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
Yan, L., Yang, M., Guo, H., Yang, L., Wu, J., Li, R., Liu, P., Lian, Y., Zheng, X., Yan, J., et al. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2660 · Cited by 1,740 · see citing works
m 6 A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation
Geula, S., Moshitch-Moshkovitz, S., Dominissini, D., Mansour, A. A., Kol, N., Salmon‐Divon, M., Hershkovitz, V., Peer, E., Mor, N., Manor, Y. S., et al. (2015) · Science · doi:10.1126/science.1261417 · Cited by 1,560 · see citing works
Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells.
Hayashi, K., Ohta, H., Kurimoto, K., Aramaki, S., & Saitou, M. (2011) · Cell · doi:10.1016/j.cell.2011.06.052 · Cited by 1,324 · see citing works
Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
Petropoulos, S., Edsgärd, D., Reinius, B., Deng, Q., Panula, S. P., Codeluppi, S., Plaza Reyes, A., Linnarsson, S., Sandberg, R., & Lanner, F. (2016) · Cell · doi:10.1016/j.cell.2016.03.023 · Cited by 1,063 · see citing works
Derivation of novel human ground state naive pluripotent stem cells
Gafni, O., Weinberger, L., Mansour, A. A., Manor, Y. S., Chomsky, E., Ben‐Yosef, D., Kalma, Y., Viukov, S. V., Maza, I., Zviran, A., et al. (2013) · Nature · doi:10.1038/nature12745 · Cited by 1,039 · see citing works
Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells
Carey, B. W., Finley, L. W. S., Cross, J. R., Allis, C. D., & Thompson, C. B. (2015) · Nature · doi:10.1038/nature13981 · Cited by 1,007 · see citing works
Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human
Takashima, Y., Guo, G., Loos, R., Nichols, J., Ficz, G., Krueger, F., Oxley, D., Santos, F., Clarke, J., Mansfield, W., et al. (2014) · Cell · doi:10.1016/j.cell.2014.08.029 · Cited by 980 · see citing works
A unique regulatory phase of DNA methylation in the early mammalian embryo
Smith, Z. D., Chan, M. M., Mikkelsen, T. S., Gu, H., Gnirke, A., Regev, A., & Meissner, A. (2012) · Nature · doi:10.1038/nature10960 · Cited by 964 · see citing works
The DNA methylation landscape of human early embryos
Guo, H., Zhu, P., Yan, L., Li, R., Hu, B., Lian, Y., Yan, J., Ren, X., Lin, S., Li, J., et al. (2014) · Nature · doi:10.1038/nature13544 · Cited by 919 · see citing works
Derivation of Human Trophoblast Stem Cells
Okae, H., Toh, H., Sato, T., Hiura, H., Takahashi, S., Shirane, K., Kabayama, Y., Suyama, M., Sasaki, H., & Arima, T. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.11.004 · Cited by 915 · see citing works
Theunissen, T. W., Powell, B. E., Wang, H., Mitalipova, M., Faddah, D. A., Reddy, J., Fan, Z. P., Maetzel, D., Ganz, K., Shi, L., et al. (2014) · Cell stem cell · doi:10.1016/j.stem.2014.07.002 · Cited by 888 · see citing works
The Transcriptional and Epigenomic Foundations of Ground State Pluripotency
Marks, H., Kalkan, T., Menafra, R., Denissov, S., Jones, K. A., Hofemeister, H., Nichols, J., Kranz, A., Stewart, A., Smith, A. G., et al. (2012) · Cell · doi:10.1016/j.cell.2012.03.026 · Cited by 881 · see citing works
Hanna, J. H., Cheng, A. W., Saha, K., Kim, J., Lengner, C. J., Soldner, F., Cassady, J. P., Muffat, J., Carey, B. W., & Jaenisch, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1004584107 · Cited by 840 · see citing works
SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate
Irie, N., Weinberger, L., Tang, W. W. C., Kobayashi, T., Viukov, S. V., Manor, Y. S., Dietmann, S., Hanna, J. H., & Surani, M. A. (2014) · Cell · doi:10.1016/j.cell.2014.12.013 · Cited by 839 · see citing works
Pluripotency and Cellular Reprogramming: Facts, Hypotheses, Unresolved Issues
Hanna, J. H., Saha, K., & Jaenisch, R. (2010) · Cell · doi:10.1016/j.cell.2010.10.008 · Cited by 695 · see citing works
Dynamic stem cell states: Naive to primed pluripotency in rodents and humans
Weinberger, L., Ayyash, M., Novershtern, N., & Hanna, J. H. (2016) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2015.28 · Cited by 622 · see citing works
Wray, J. P., Kalkan, T., Gómez‐López, S., Eckardt, D., Cook, A. S., Kemler, R., & Smith, A. G. (2011) · Nature Cell Biology · doi:10.1038/ncb2267 · Cited by 525 · see citing works
Deterministic direct reprogramming of somatic cells to pluripotency
Rais, Y., Zviran, A., Geula, S., Gafni, O., Chomsky, E., Viukov, S., Mansour, A. A., Caspi, I., Krupalnik, V., Zerbib, M., et al. (2013) · Nature · doi:10.1038/nature12587 · Cited by 522 · see citing works
Molecular Criteria for Defining the Naive Human Pluripotent State
Theunissen, T. W., Friedli, M., He, Y., Planet, E., O’Neil, R. C., Markoulaki, S., Pontis, J., Wang, H., Iouranova, A., Imbeault, M., et al. (2016) · Cell stem cell · doi:10.1016/j.stem.2016.06.011 · Cited by 510 · see citing works
Derivation of Pluripotent Stem Cells with In Vivo Embryonic and Extraembryonic Potency
Yang, Y., Liu, B., Xu, J., Wang, J., Wu, J., Shi, C., Xu, Y., Dong, J., Wang, C., Lai, W., et al. (2017) · Cell · doi:10.1016/j.cell.2017.02.005 · Cited by 506 · see citing works
Interspecies Chimerism with Mammalian Pluripotent Stem Cells
Wu, J., Platero-Luengo, A., Sakurai, M., Sugawara, A., Gil, M. A., Yamauchi, T., Suzuki, K., Bogliotti, Y. S., Cuello, C., Valencia, M. M., et al. (2017) · Cell · doi:10.1016/j.cell.2016.12.036 · Cited by 500 · see citing works
Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells
Liao, J., Karnik, R., Gu, H., Ziller, M. J., Clement, K., Tsankov, A. M., Akopian, V., Gifford, C. A., Donaghey, J., Galonska, C., et al. (2015) · Nature Genetics · doi:10.1038/ng.3258 · Cited by 470 · see citing works
Single-cell transcriptomic characterization of a gastrulating human embryo
Tyser, R. C. V., Mahammadov, E., Nakanoh, S., Vallier, L., Scialdone, A., & Srinivas, S. (2021) · Nature · doi:10.1038/s41586-021-04158-y · Cited by 467 · see citing works
Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
Blakeley, P., Fogarty, N. M. E., del Valle, I., Wamaitha, S. E., Hu, T. X., Elder, K. T., Snell, P., Christie, L., Robson, P., & Niakan, K. K. (2015) · Development · doi:10.1242/dev.123547 · Cited by 466 · see citing works
Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells
ten Berge, D., Kurek, D., Blauwkamp, T. A., Koole, W., Maas, A., Eroğlu, E., Siu, R. K., & Nusse, R. (2011) · Nature Cell Biology · doi:10.1038/ncb2314 · Cited by 462 · see citing works
Sperber, H., Mathieu, J., Wang, Y., Ferreccio, A., Hesson, J., Xu, Z., Fischer, K. A., Devi, A., Detraux, D., Gu, H., et al. (2015) · Nature Cell Biology · doi:10.1038/ncb3264 · Cited by 421 · see citing works
Regulatory Principles of Pluripotency: From the Ground State Up
Hackett, J. A., & Surani, M. A. (2014) · Cell stem cell · doi:10.1016/j.stem.2014.09.015 · Cited by 404 · see citing works
Chan, Y.-S., Göke, J., Ng, J.-H., Lu, X., Gonzales, K. A. U., Tan, C.-P., Tng, W. J., Hong, Z.-Z., Lim, Y. S., & Ng, H. (2013) · Cell stem cell · doi:10.1016/j.stem.2013.11.015 · Cited by 392 · see citing works
Angeles, A. D. L., Ferrari, F., Xi, R., Fujiwara, Y., Benvenisty, N., Deng, H., Hochedlinger, K., Jaenisch, R., Lee, S., Leitch, H. G., et al. (2015) · Nature · doi:10.1038/nature15515 · Cited by 390 · see citing works
Esrrb Is a Pivotal Target of the Gsk3/Tcf3 Axis Regulating Embryonic Stem Cell Self-Renewal
Martello, G., Sugimoto, T., Diamanti, E., Joshi, A., Hannah, R., Ohtsuka, S., Göttgens, B., Niwa, H., & Smith, A. G. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.06.008 · Cited by 389 · see citing works
The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
Bertero, A., Brown, S. E., Madrigal, P., Osnato, A., Ortmann, D., Yiangou, L., Kadiwala, J., Hubner, N. C., Mozos, I. R. D. L., Sadée, C., et al. (2018) · Nature · doi:10.1038/nature25784 · Cited by 382 · see citing works
Defining an essential transcription factor program for naïve pluripotency
Dunn, S.-J., Martello, G., Yordanov, B., Emmott, S., & Smith, A. G. (2014) · Science · doi:10.1126/science.1248882 · Cited by 370 · see citing works
Erosion of Dosage Compensation Impacts Human iPSC Disease Modeling
Mekhoubad, S., Bock, C., de Boer, A. S., Kiskinis, E., Meissner, A., & Eggan, K. C. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.02.014 · Cited by 362 · see citing works
Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass
Guo, G., von Meyenn, F., Santos, F., Chen, Y., Reik, W., Bertone, P., Smith, A. G., & Nichols, J. (2016) · Stem Cell Reports · doi:10.1016/j.stemcr.2016.02.005 · Cited by 362 · see citing works
Chromatin analysis in human early development reveals epigenetic transition during ZGA
Wu, J., Xu, J., Liu, B., Yao, G., Wang, P., Lin, Z., Huang, B., Wang, X., Li, T., Shi, S., et al. (2018) · Nature · doi:10.1038/s41586-018-0080-8 · Cited by 343 · see citing works
Betschinger, J., Nichols, J., Dietmann, S., Corrin, P. D., Paddison, P. J., & Smith, A. G. (2013) · Cell · doi:10.1016/j.cell.2013.03.012 · Cited by 335 · see citing works
Metastable Pluripotent States in NOD-Mouse-Derived ESCs
Hanna, J. H., Markoulaki, S., Mitalipova, M. M., Cheng, A. W., Cassady, J. P., Staerk, J., Carey, B. W., Lengner, C. J., Foreman, R. K., Love, J. A., et al. (2009) · Cell stem cell · doi:10.1016/j.stem.2009.04.015 · Cited by 326 · see citing works
Epigenetic resetting of human pluripotency
Guo, G., von Meyenn, F., Rostovskaya, M., Clarke, J., Dietmann, S., Baker, D., Sahakyan, A., Myers, S., Bertone, P., Reik, W., et al. (2017) · Development · doi:10.1242/dev.146811 · Cited by 319 · see citing works
Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
Blakeley, P., Fogarty, N. M. E., del Valle, I., Wamaitha, S. E., Hu, T. X., Elder, K. T., Snell, P., Christie, L., Robson, P., & Niakan, K. K. (2015) · Development · doi:10.1242/dev.131235 · Cited by 316 · see citing works
Kojima, Y., Kaufman‐Francis, K., Studdert, J. B., Steiner, K. A., Power, M., Loebel, D. A. F., Jones, V. J., Hor, A. C. C., de Alencastro, G., Logan, G. J., et al. (2013) · Cell stem cell · doi:10.1016/j.stem.2013.09.014 · Cited by 303 · see citing works
Establishment of mouse expanded potential stem cells
Yang, J. P., Ryan, D. J., Wang, W., Tsang, J. C.-H., Lan, G., Masaki, H., Gao, X., Antunes, L., Yu, Y., Zhu, Z., et al. (2017) · Nature · doi:10.1038/nature24052 · Cited by 300 · see citing works
Pontis, J., Planet, E., Offner, S. E., Turelli, P., Duc, J., Coudray, A., Theunissen, T. W., Jaenisch, R., & Trono, D. (2019) · Cell stem cell · doi:10.1016/j.stem.2019.03.012 · Cited by 293 · see citing works
Pastor, W. A., Chen, D., Liu, W., Kim, R., Sahakyan, A., Lukianchikov, A., Plath, K., Jacobsen, S. E., & Clark, A. T. (2016) · Cell stem cell · doi:10.1016/j.stem.2016.01.019 · Cited by 284 · see citing works
Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells
Choi, J., Huebner, A. J., Clement, K., Walsh, R. M., Savol, A. J., Lin, K., Gu, H., Stefano, B. D., Brumbaugh, J., Kim, S. Y., et al. (2017) · Nature · doi:10.1038/nature23274 · Cited by 272 · see citing works
Induction of Pluripotency in Adult Unipotent Germline Stem Cells
Ko, K., Tàpia, N., Wu, G., Kim, J. B., Araúzo-Bravo, M. J., Sasse, P., Glaser, T., Ruau, D., Han, D., Greber, B., et al. (2009) · Cell stem cell · doi:10.1016/j.stem.2009.05.025 · Cited by 262 · see citing works
Dynamic binding of RBPJ is determined by Notch signaling statusPreprint
Castel, D., Mourikis, P., Bartels, S. J. J., Brinkman, A. B., Tajbakhsh, S., & Stunnenberg, H. G. (2013) · Genes & Development · doi:10.1101/gad.211912.112 · Cited by 256 · see citing works
Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation
Sahakyan, A., Kim, R., Chronis, C., Sabri, S., Bonora, G., Theunissen, T. W., Kuoy, E., Langerman, J., Clark, A. T., Jaenisch, R., et al. (2016) · Cell stem cell · doi:10.1016/j.stem.2016.10.006 · Cited by 256 · see citing works
An alternative pluripotent state confers interspecies chimaeric competency
Wu, J., Okamura, D., Li, M., Suzuki, K., Luo, C., Ma, L., He, Y., Li, Z., Benner, C. W., Tamura, I., et al. (2015) · Nature · doi:10.1038/nature14413 · Cited by 243 · see citing works
von Meyenn, F., Iurlaro, M., Habibi, E., Liu, N. Q., Salehzadeh‐Yazdi, A., Santos, F., Petrini, E., Milagre, I., Yu, M., Xie, Z., et al. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.04.025 · Cited by 232 · see citing works
Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
Sophie Petropoulos, A., Edsgärd, D., Reinius, B., Deng, Q., Panula, S., Codeluppi, S., Reyes, Á. P., Linnarsson, S., Sandberg, R., & Lanner, F. (2016) · Cell · doi:10.1016/j.cell.2016.08.009 · Cited by 227 · see citing works
Lluis, J. M., Buricchi, F., Chiarugi, P., Morales, A., & Fernández-Checa, J. C. (2007) · Cancer Research · doi:10.1158/0008-5472.can-07-0515 · Cited by 220 · see citing works
Derivation of ground-state female ES cells maintaining gamete-derived DNA methylation
Yagi, M., Kishigami, S., Tanaka, A., Semi, K., Mizutani, E., Wakayama, S., Wakayama, T., Yamamoto, T., & Yamada, Y. (2017) · Nature · doi:10.1038/nature23286 · Cited by 197 · see citing works
TFAP2C regulates transcription in human naive pluripotency by opening enhancers
Pastor, W. A., Liu, W., Chen, D., Ho, J., Kim, R., Hunt, T. J., Lukianchikov, A., Liu, X., Polo, J. M., Jacobsen, S. E., et al. (2018) · Nature Cell Biology · doi:10.1038/s41556-018-0089-0 · Cited by 182 · see citing works
Collier, A. J., Panula, S., Schell, J. P., Chovanec, P., Reyes, Á. P., Sophie Petropoulos, A., Corcoran, A. E., Walker, R. V., Douagi, I., Lanner, F., et al. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.02.014 · Cited by 178 · see citing works
Linneberg-Agerholm, M., Wong, Y. F., Herrera, J. A. R., Monteiro, R. S., Anderson, K. G. V., & Brickman, J. M. (2019) · Development · doi:10.1242/dev.180620 · Cited by 168 · see citing works
Liu, X., Nefzger, C. M., Rossello, F. J., Chen, J., Knaupp, A. S., Firas, J., Ford, E., Pflueger, J., Paynter, J. M., Chy, H. S., et al. (2017) · Nature Methods · doi:10.1038/nmeth.4436 · Cited by 167 · see citing works
Kim, H., Wu, J., Ye, S., Tai, C.-I., Zhou, X., Yan, H., Li, P., Pera, M. F., & Ying, Q.-L. (2013) · Nature Communications · doi:10.1038/ncomms3403 · Cited by 165 · see citing works
A Call to Standardize Teratoma Assays Used to Define Human Pluripotent Cell Lines
Müller, F.-J., Goldmann, J. E., Löser, P., & Loring, J. F. (2010) · Cell stem cell · doi:10.1016/j.stem.2010.04.009 · Cited by 145 · see citing works
Torres, J., & Watt, F. M. (2008) · Nature Cell Biology · doi:10.1038/ncb1680 · Cited by 145 · see citing works
Capacitation of human naïve pluripotent stem cells for multi-lineage differentiation
Rostovskaya, M., Stirparo, G. G., & Smith, A. G. (2019) · Development · doi:10.1242/dev.172916 · Cited by 130 · see citing works
Complementary Activity of ETV5, RBPJ, and TCF3 Drives Formative Transition from Naive Pluripotency
Kalkan, T., Bornelöv, S., Mulas, C., Diamanti, E., Lohoff, T., Ralser, M., Middelkamp, S., Lombard, P., Nichols, J., & Smith, A. G. (2019) · Cell stem cell · doi:10.1016/j.stem.2019.03.017 · Cited by 119 · see citing works
Wnt Inhibition Facilitates RNA-Mediated Reprogramming of Human Somatic Cells to Naive Pluripotency
Bredenkamp, N., Yang, J. P., Clarke, J., Stirparo, G. G., von Meyenn, F., Dietmann, S., Baker, D., Drummond, R., Ren, Y., Li, D., et al. (2019) · Stem Cell Reports · doi:10.1016/j.stemcr.2019.10.009 · Cited by 119 · see citing works
Stem Cells: A Renaissance in Human Biology Research
Wu, J., & Belmonte, J. C. I. (2016) · Cell · doi:10.1016/j.cell.2016.05.043 · Cited by 107 · see citing works
Bredenkamp, N., Stirparo, G. G., Nichols, J., Smith, A. G., & Guo, G. (2019) · Stem Cell Reports · doi:10.1016/j.stemcr.2019.03.014 · Cited by 104 · see citing works
Cell competition constitutes a barrier for interspecies chimerism
Zheng, C., Hu, Y., Sakurai, M., Pinzón-Arteaga, C. A., Li, J., Wei, Y., Okamura, D., Ravaux, B., Barlow, H. R., Yu, L., et al. (2021) · Nature · doi:10.1038/s41586-021-03273-0 · Cited by 104 · see citing works
Large-Scale Analysis of Loss of Imprinting in Human Pluripotent Stem Cells
Bar, S., Schachter, M., Eldar‐Geva, T., & Benvenisty, N. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.04.020 · Cited by 93 · see citing works
Lee, H. S., Moon, C., Lee, H. W., Park, E., Cho, M.-S., & Kang, J. L. (2007) · The Journal of Immunology · doi:10.4049/jimmunol.179.10.7001 · Cited by 90 · see citing works
Tankyrase inhibition promotes a stable human naïve pluripotent state with improved functionality
Zimmerlin, L., Park, T. S., Huo, J. S., Verma, K., Pather, S. R., Talbot, C. C., Agarwal, J. R., Steppan, D. A., Zhang, Y. W., Considine, M., et al. (2016) · Development · doi:10.1242/dev.138982 · Cited by 82 · see citing works
Safeguards for Cell Cooperation in Mouse Embryogenesis Shown by Genome-Wide Cheater Screen
Déjosez, M., Ura, H., Brandt, V. L., & Zwaka, T. P. (2013) · Science · doi:10.1126/science.1241628 · Cited by 75 · see citing works
Notch inhibition allows oncogene-independent generation of iPS cells
Ichida, J. K., Julia, T. C. W., Williams, L. A., Carter, A. C., Shi, Y., Moura, M. T., Ziller, M. J., Singh, S., Amabile, G., Bock, C., et al. (2014) · Nature Chemical Biology · doi:10.1038/nchembio.1552 · Cited by 73 · see citing works
Global Characterization of X Chromosome Inactivation in Human Pluripotent Stem Cells
Bar, S., Seaton, L. R., Weissbein, U., Eldar‐Geva, T., & Benvenisty, N. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.03.019 · Cited by 64 · see citing works
Disruption of NOTCH signaling by a small molecule inhibitor of the transcription factor RBPJ
Hurtado, C., Safarova, A. G., Smith, M. P., Chung, R., Bruyneel, A. A. N., Gomez‐Galeno, J., Oswald, F., Larson, C. J., Cashman, J. R., Ruiz‐Lozano, P., et al. (2019) · Scientific Reports · doi:10.1038/s41598-019-46948-5 · Cited by 58 · see citing works
Theunissen, T. W., Powell, B. E., Wang, H., Mitalipova, M., Faddah, D. A., Reddy, J., Fan, Z. P., Maetzel, D., Ganz, K., Shi, L., et al. (2014) · Cell stem cell · doi:10.1016/j.stem.2014.08.002 · Cited by 52 · see citing works
Structural Basis for the SOX-Dependent Genomic Redistribution of OCT4 in Stem Cell Differentiation
Merino, F., Ng, C. K. L., Veerapandian, V., Schöler, H. R., Jauch, R., & Cojocaru, V. (2014) · Structure · doi:10.1016/j.str.2014.06.014 · Cited by 51 · see citing works
An, C., Feng, G., Zhang, J., Cao, S., Wang, Y., Wang, N., Lu, F., Zhou, Q., & Wang, H. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.06.002 · Cited by 50 · see citing works
von Meyenn, F., Iurlaro, M., Habibi, E., Liu, N. Q., Salehzadeh‐Yazdi, A., Santos, F., Petrini, E., Milagre, I., Yu, M., Xie, Z., et al. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.06.005 · Cited by 48 · see citing works
A spatially resolved single cell atlas of human gastrulation
Estermann, M. A. (2020) · doi:10.1242/prelights.24536 · Cited by 19 · see citing works
Reduced MEK inhibition preserves genomic stability in naïve human ES cells
Stefano, B. D., Stefano, B. D., & Hochedlinger, K. (2018) · Protocol Exchange · doi:10.1038/protex.2018.062 · Cited by 2 · see citing works
Flagged first, then by citations
1 of the 83 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Regulation and function of the mammalian tricarboxylic acid cycle
Arnold, P. K., & Finley, L. W. S. (2023) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2022.102838 · Cited by 535 · see citing works
“TCA cycle activity also varies with PSC identity in human ESCs, which display glutamine independence and increased mitochondrial respiration upon conversion to a more naïve state (215, 216).”
BackgroundRolling back human pluripotent stem cells to an eight-cell embryo-like stage
Mazid, M. A., Ward, C., Luo, Z., Liu, C., Li, Y., Lai, Y., Wu, L. L., Li, J., Jia, W., Jiang, Y., et al. (2022) · Nature · doi:10.1038/s41586-022-04625-0 · Cited by 249 · see citing works
Post-gastrulation synthetic embryos generated ex utero from mouse naive ESCs
Tarazi, S., Aguilera-Castrejon, A., Joubran, C., Ghanem, N., Ashouokhi, S., Roncato, F., Wildschutz, E., Haddad, M., Oldak, B., Gomez-Cesar, E., et al. (2022) · Cell · doi:10.1016/j.cell.2022.07.028 · Cited by 246 · see citing works
Complete human day 14 post-implantation embryo models from naive ES cells
Oldak, B., Wildschutz, E., Bondarenko, V., Comar, M.-Y., Zhao, C., Aguilera-Castrejon, A., Tarazi, S., Viukov, S. V., Pham, T. X. A., Ashouokhi, S., et al. (2023) · Nature · doi:10.1038/s41586-023-06604-5 · Cited by 232 · see citing works
WNT and NOTCH signaling in human trophoblast development and differentiation
Dietrich, B., Haider, S., Meinhardt, G., Pollheimer, J., & Knöfler, M. (2022) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-022-04285-3 · Cited by 138 · see citing works
A patterned human neural tube model using microfluidic gradients
Xue, X., Kim, Y. S., Ponce, I., O’Laughlin, R., Yan, R. Z., Kobayashi, N., Tshuva, R. Y., Tsai, Y.-H., Sun, S., Zheng, Y., et al. (2024) · Nature · doi:10.1038/s41586-024-07204-7 · Cited by 126 · see citing works
Chimeric contribution of human extended pluripotent stem cells to monkey embryos ex vivo
Tan, T., Wu, J., Si, C., Dai, S., Zhang, Y., Sun, N., Zhang, E., Shao, H., Si, W., Yang, P., et al. (2021) · Cell · doi:10.1016/j.cell.2021.03.020 · Cited by 125 · see citing works
Metabolic regulation of the hallmarks of stem cell biology
Jackson, B. T., & Finley, L. W. S. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.01.003 · Cited by 122 · see citing works
Dissecting peri-implantation development using cultured human embryos and embryo-like assembloids
Ai, Z., Niu, B., Yin, Y., Xiang, L., Shi, G., Duan, K., Wang, S., Hu, Y., Zhang, C., Zhang, C., et al. (2023) · Cell Research · doi:10.1038/s41422-023-00846-8 · Cited by 108 · see citing works
Cell competition constitutes a barrier for interspecies chimerism
Zheng, C., Hu, Y., Sakurai, M., Pinzón-Arteaga, C. A., Li, J., Wei, Y., Okamura, D., Ravaux, B., Barlow, H. R., Yu, L., et al. (2021) · Nature · doi:10.1038/s41586-021-03273-0 · Cited by 104 · see citing works
Recapitulating early human development with 8C-like cells
Xiu, Y., Liang, S., Chen, M., Yu, H., Li, R., Qu, Y., Kong, X., Guo, R., Zheng, R., Izsvák, Z., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.110994 · Cited by 94 · see citing works
Molecular Mechanisms Underlying Pluripotency and Self-Renewal of Embryonic Stem Cells
Varzideh, F., Gambardella, J., Kansakar, U., Jankauskas, S. S., & Santulli, G. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24098386 · Cited by 92 · see citing works
Hallmarks of totipotent and pluripotent stem cell states
Du, P., & Wu, J. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.01.009 · Cited by 92 · see citing works
Chemical reprogramming for cell fate manipulation: Methods, applications, and perspectives
Wang, J., Sun, S., & Deng, H. (2023) · Cell Stem Cell · doi:10.1016/j.stem.2023.08.001 · Cited by 91 · see citing works
Pera, M. F., & Rossant, J. (2021) · Cell stem cell · doi:10.1016/j.stem.2021.10.001 · Cited by 86 · see citing works
Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction
Zijlmans, D. W., Talón, I., Verhelst, S., Bendall, A., van Nerum, K., Javali, A., Malcolm, A. A., van Knippenberg, S. S. F. A., Biggins, L., To, S. K., et al. (2022) · Nature Cell Biology · doi:10.1038/s41556-022-00932-w · Cited by 78 · see citing works
Modeling human embryo development with embryonic and extra-embryonic stem cells
Weatherbee, B. A. T., Cui, T., & Zernicka‐Goetz, M. (2020) · Developmental Biology · doi:10.1016/j.ydbio.2020.12.010 · Cited by 75 · see citing works
Early human development and stem cell-based human embryo models
Shahbazi, M. N., & Pasque, V. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.09.002 · Cited by 81 · see citing works
Wang, J., Xie, W., Li, N., Li, W., Zhang, Z., Fan, N., Ouyang, Z., Zhao, Y., Lai, C., Li, H., et al. (2023) · Cell stem cell · doi:10.1016/j.stem.2023.08.003 · Cited by 69 · see citing works
TGFβ signalling is required to maintain pluripotency of human naïve pluripotent stem cells
Osnato, A., Brown, S. E., Krueger, C., Andrews, S., Collier, A. J., Nakanoh, S., Londoño, M. Q., Wesley, B. T., Muraro, D., Brumm, A. S., et al. (2021) · eLife · doi:10.7554/elife.67259 · Cited by 61 · see citing works
Carter, T. A., Singh, M., Dumbović, G., Chobirko, J. D., Rinn, J. L., & Feschotte, C. (2022) · eLife · doi:10.7554/elife.76257 · Cited by 61 · see citing works
mTOR activity paces human blastocyst stage developmental progression
Iyer, D. P., Khoei, H. H., van der Weijden, V. A., Kagawa, H., Pradhan, S. J., Novatchkova, M., McCarthy, A., Rayón, T., Simon, C. S., Dunkel, I., et al. (2024) · Cell · doi:10.1016/j.cell.2024.08.048 · Cited by 57 · see citing works
Simunovic, M., Siggia, E. D., & Brivanlou, A. H. (2022) · Cell stem cell · doi:10.1016/j.stem.2022.05.001 · Cited by 56 · see citing works
Human primed and naïve PSCs are both able to differentiate into trophoblast stem cells
Viukov, S. V., Shani, T., Bayerl, J., Aguilera-Castrejon, A., Oldak, B., Sheban, D., Tarazi, S., Stelzer, Y., Hanna, J. H., & Novershtern, N. (2022) · Stem Cell Reports · doi:10.1016/j.stemcr.2022.09.008 · Cited by 54 · see citing works
Zheng, C., Ballard, E. B., & Wu, J. (2021) · Development · doi:10.1242/dev.195792 · Cited by 49 · see citing works
Generating human blastoids modeling blastocyst-stage embryos and implantation
Khoei, H. H., Javali, A., Kagawa, H., Sommer, T. M., Sestini, G., David, L., Slováková, J., Novatchkova, M., Reimer, Y. S. O., & Rivron, N. C. (2023) · Nature Protocols · doi:10.1038/s41596-023-00802-1 · Cited by 49 · see citing works
Overcoming Chemotherapy Resistance in Germ Cell Tumors
Országhová, Z., Kaľavská, K., Mego, M., & Chovanec, M. (2022) · Biomedicines · doi:10.3390/biomedicines10050972 · Cited by 42 · see citing works
Induction and application of human naive pluripotency
Zhou, J., Hu, J., Wang, Y., & Gao, S. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112379 · Cited by 42 · see citing works
A new era of stem cell and developmental biology: from blastoids to synthetic embryos and beyond
Kim, Y., Kim, I. S., & Shin, K. (2023) · Experimental & Molecular Medicine · doi:10.1038/s12276-023-01097-8 · Cited by 44 · see citing works
Toward developing human organs via embryo models and chimeras
Wu, J., & Fu, J. (2024) · Cell · doi:10.1016/j.cell.2024.05.027 · Cited by 40 · see citing works
Bi, Y., Tu, Z., Zhou, J., Zhu, X., Wang, H., Gao, S., & Wang, Y. (2022) · Nature Communications · doi:10.1038/s41467-022-30924-1 · Cited by 38 · see citing works
Live birth of chimeric monkey with high contribution from embryonic stem cells
Cao, J., Li, W., Li, J., Mazid, M. A., Li, C., Jiang, Y., Jia, W., Wu, L. L., Liao, Z., Sun, S., et al. (2023) · Cell · doi:10.1016/j.cell.2023.10.005 · Cited by 38 · see citing works
Alves-Lopes, J. P., Wong, F. C. K., Tang, W. W. C., Gruhn, W. H., Ramakrishna, N. B., Jowett, G. M., Jahnukainen, K., & Surani, M. A. (2023) · Cell Reports · doi:10.1016/j.celrep.2022.111907 · Cited by 36 · see citing works
LINE1 and PRC2 control nucleolar organization and repression of the 8C state in human ESCs
Zhang, J., Ataei, L., Mittal, K., Wu, L. L., Caldwell, L., Huynh, L., Sarajideen, S., Tse, K. Y., Simon, M.-M., Mazid, M. A., et al. (2024) · Developmental Cell · doi:10.1016/j.devcel.2024.09.024 · Cited by 31 · see citing works
Wang, X., Song, C., Ye, Y., Gu, Y., Li, X., Chen, P., Leng, D., Xiao, J., Wu, H., Xie, S., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad907 · Cited by 30 · see citing works
KLF17 promotes human naïve pluripotency but is not required for its establishment
Lea, R. A., McCarthy, A., Boeing, S., Fallesen, T. L., Elder, K. T., Snell, P., Christie, L., Adkins, S., Shaikly, V., Taranissi, M., et al. (2021) · Development · doi:10.1242/dev.199378 · Cited by 26 · see citing works
TFEB controls syncytiotrophoblast formation and hormone production in placenta
Cesana, M., Tufano, G., Panariello, F., Zampelli, N., Soldati, C., Mutarelli, M., Montefusco, S., Grieco, G., Sepe, L. V., Rossi, B., et al. (2024) · Cell Death and Differentiation · doi:10.1038/s41418-024-01337-y · Cited by 26 · see citing works
Establishment of human induced trophoblast stem cells via reprogramming of fibroblasts
Tan, J. P., Liu, X., & Polo, J. M. (2022) · Nature Protocols · doi:10.1038/s41596-022-00742-2 · Cited by 26 · see citing works
Suppression of YAP safeguards human naïve pluripotency
Dattani, A., Huang, T., Liddle, C., Smith, A. G., & Guo, G. (2022) · Development · doi:10.1242/dev.200988 · Cited by 25 · see citing works
van Nerum, K., Wenzel, A., Argemi‐Muntadas, L., Kafkia, E., Drews, A., Brun, I. S., Lavro, V., Roelofsen, A., Stamidis, N., Bagés‐Arnal, S., et al. (2025) · Nature Cell Biology · doi:10.1038/s41556-025-01658-1 · Cited by 25 · see citing works
Ito, J., Seita, Y., Kojima, S., Parrish, N. F., Sasaki, K., & Sato, K. (2022) · PLoS Genetics · doi:10.1371/journal.pgen.1009846 · Cited by 24 · see citing works
Generation of rat forebrain tissues in mice
Huang, J., He, B., Yang, X., Long, X., Wei, Y., Li, L., Tang, M., Gao, Y., Fang, Y., Ying, W., et al. (2024) · Cell · doi:10.1016/j.cell.2024.03.017 · Cited by 27 · see citing works
VGLL1 cooperates with TEAD4 to control human trophectoderm lineage specification
Yang, Y., Jia, W., Luo, Z., Li, Y., Liu, H., Fu, L., Li, J., Jiang, Y., Lai, J., Li, H., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-44780-8 · Cited by 25 · see citing works
Collier, A. J., Bendall, A., Fabian, C., Malcolm, A. A., Tilgner, K., Semprich, C. I., Wojdyła, K., Nisi, P. S., Kishore, K., Franklin, V. N. R., et al. (2022) · Science Advances · doi:10.1126/sciadv.abk0013 · Cited by 21 · see citing works
Amino acid intake strategies define pluripotent cell states
Todorova, P. K., Jackson, B. T., Garg, V., Paras, K. I., Brunner, J. S., Bridgeman, A. E., Chen, Y., Baksh, S. C., Yan, J., Hadjantonakis, A., et al. (2024) · Nature Metabolism · doi:10.1038/s42255-023-00940-6 · Cited by 21 · see citing works
From Mice to Men: Generation of Human Blastocyst-Like Structures In Vitro
Luijkx, D. G., Shankar, V., van Blitterswijk, C., Giselbrecht, S., & Vrij, E. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2022.838356 · Cited by 19 · see citing works
Bouchereau, W., Jouneau, L., Archilla, C., Aksoy, I., Moulin, A., Daniel, N., Peynot, N., Caldérari, S., Joly, T., Godet, M., et al. (2022) · Development · doi:10.1242/dev.200538 · Cited by 19 · see citing works
Zhu, Q., Wang, F., Gao, D., Gao, J., Li, G., Jiao, D., Zhu, G., Xu, K., Guo, J., Chen, T., et al. (2023) · Cell Proliferation · doi:10.1111/cpr.13487 · Cited by 17 · see citing works
Yılmaz, A., Gurhan, G., Comar, M.-Y., Viukov, S. V., Serfaty, I., Gayretli, M., Golenchenko, S., Lokshtanov, D., Ashouokhi, S., Polanco, A., et al. (2025) · Cell Stem Cell · doi:10.1016/j.stem.2025.07.005 · Cited by 15 · see citing works
Selective RNA sequestration in biomolecular condensates directs cell fate transitions
Pessina, P., Nevo, M., Shi, J., Kodali, S., Casas, E., Cui, Y., Richards, A., Park, E. J., Chen, X., Levin-Ferreyra, F., et al. (2025) · Nature Biotechnology · doi:10.1038/s41587-025-02853-z · Cited by 20 · see citing works
Recent advances in understanding cell types during human gastrulation
Tyser, R., & Srinivas, S. (2022) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2022.05.004 · Cited by 12 · see citing works
Manipulating cell fate through reprogramming: approaches and applications.
Yagi, M., Horng, J. E., & Hochedlinger, K. (2024) · Development · doi:10.1242/dev.203090 · Cited by 15 · see citing works
New insights into the epitranscriptomic control of pluripotent stem cell fate
Hyun, Y. S., Lee, H.-J., & Kim, Y. J. (2022) · Experimental & Molecular Medicine · doi:10.1038/s12276-022-00824-x · Cited by 16 · see citing works
Chen, A. C. H., Lee, Y. L., Ruan, H., Huang, W. M., Fong, S. W., Tian, S. I. P., Lee, K. C., Wu, G. M., Tan, Y., Wong, T. C. H., et al. (2023) · Advanced Science · doi:10.1002/advs.202204797 · Cited by 16 · see citing works
Chemical conversion of human conventional PSCs to TSCs following transient naive gene activation
Zorzan, I., Betto, R. M., Rossignoli, G., Arboit, M., Drusin, A., Corridori, C., Martini, P. G. V., & Martello, G. (2023) · EMBO Reports · doi:10.15252/embr.202255235 · Cited by 16 · see citing works
Mechanisms of human germ cell development
Saitou, M., Nagano, M., & Mizuta, K. (2025) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-025-00893-6 · Cited by 15 · see citing works
Zhang, Y., Zhang, H., Li, Y., Liang, G., Zhu, C., Wang, Y., Ji, S., He, C., Sun, J., & Zhang, J. (2023) · Reproductive BioMedicine Online · doi:10.1016/j.rbmo.2023.06.004 · Cited by 15 · see citing works
Capturing Pluripotency and Beyond
Yeh, C.-Y., Huang, W.-H., Chen, H.-C., & Meir, Y. (2021) · Cells · doi:10.3390/cells10123558 · Cited by 13 · see citing works
Generation and characterization of mature hepatocyte organoids for liver metabolic studies
Liu, Y., Zhou, Y., Ahodantin, J., Jin, Y., Zhu, J., Sun, Z., Wu, X., Su, L., & Yang, Y. (2024) · Journal of Cell Science · doi:10.1242/jcs.261961 · Cited by 15 · see citing works
Chemical-based epigenetic reprogramming to advance pluripotency and totipotency
Wen, S., Zheng, R., Cai, C., & Jiang, W. (2025) · Nature Chemical Biology · doi:10.1038/s41589-025-01874-8 · Cited by 14 · see citing works
Research progress and application prospects of stable porcine pluripotent stem cells
Zhang, J., Zhi, M., Gao, D., Zhu, Q., Gao, J., Zhu, G., Cao, S., & Han, J. (2022) · Biology of Reproduction · doi:10.1093/biolre/ioac119 · Cited by 13 · see citing works
The building blocks of embryo models: embryonic and extraembryonic stem cells
Ren, H., Jia, X.-J., & Yu, L. (2025) · Cell Discovery · doi:10.1038/s41421-025-00780-6 · Cited by 12 · see citing works
Xiao, Y., Sosa, F., Ross, P. J., Diffenderfer, K. E., & Hansen, P. J. (2021) · Biology Open · doi:10.1242/bio.058669 · Cited by 13 · see citing works
Stem cells used to model a two-week-old human embryo
Moris, N. (2023) · Nature · doi:10.1038/d41586-023-03150-y · Cited by 12 · see citing works
Delay of human early development via in vitro diapausePreprint
Iyer, D. P., van der Weijden, V. A., Khoei, H. H., McCarthy, A., Rayón, T., Simon, C. S., Dunkel, I., Wamaitha, S. E., Elder, K. T., Snell, P., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.29.541316 · Cited by 12 · see citing works
METTL3 safeguards cell identity and epigenome of human trophoblast stem cells
Fu, H., Chen, C. L., Huang, Y., Zhang, W., Li, S., Chan, F.-F., Xu, L., Ruan, D., Ouyang, X., Ma, L., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-67484-z · Cited by 11 · see citing works
Tu, Z., Bi, Y., Mao, T., Wang, H., Gao, S., & Wang, Y. (2023) · Cell Regeneration · doi:10.1186/s13619-023-00179-2 · Cited by 12 · see citing works
Ma, J., Xia, M., Guo, J., Li, W., Sun, S., & Chen, B. (2024) · Stem Cells Translational Medicine · doi:10.1093/stcltm/szae030 · Cited by 11 · see citing works
An expedition in the jungle of pluripotent stem cells of non-human primates
Anwised, P., Moorawong, R., Samruan, W., Somredngan, S., Srisutush, J., Laowtammathron, C., Aksoy, I., Parnpai, R., & Savatier, P. (2023) · Stem Cell Reports · doi:10.1016/j.stemcr.2023.09.013 · Cited by 11 · see citing works
Pluripotent cell states and fates in human embryo models
Sözen, B., Tam, P., & Pera, M. F. (2025) · Development · doi:10.1242/dev.204565 · Cited by 10 · see citing works
Intracellular metabolic gradients dictate dependence on exogenous pyruvate
Jackson, B. T., Montero, A. M., Chakraborty, S., Brunner, J. S., Arnold, P. K., Bridgeman, A. E., Todorova, P. K., Paras, K. I., & Finley, L. W. S. (2025) · Nature Metabolism · doi:10.1038/s42255-025-01289-8 · Cited by 10 · see citing works
Zhang, W., Fu, H., Huang, Y., Zeng, M., Ouyang, X., Wang, X., Ruan, D., Ma, L., Hu, X., Guo, J., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf349 · Cited by 10 · see citing works
Pham, H.-T., Perold, F., Pijoff, Y., Doerflinger, N., Rival‐Gervier, S., Givelet, M., Moulin, A., Ressaire, M., Fernandes, E. D. S., Bidault, V., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-60314-2 · Cited by 10 · see citing works
Pluripotency Dynamics during Embryogenesis and in Cell Culture
Gordeev, M. N., Bakhmet, E. I., & Tomilin, A. N. (2021) · Russian Journal of Developmental Biology · doi:10.1134/s1062360421060059 · Cited by 10 · see citing works
Dupont, C. (2024) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2024.1386739 · Cited by 10 · see citing works
Unde venisti PGRMC? Grand-Scale Biology from Early Eukaryotes and Eumetazoan Animal Origins
Cahill, M. A. (2022) · Frontiers in Bioscience-Landmark · doi:10.31083/j.fbl2711317 · Cited by 9 · see citing works
Current state of stem cell research in non-human primates: an overview
Wu, J., Shi, Y., Yang, S., Tang, Z., Li, Z., Li, Z., Zuo, J., Ji, W., & Niu, Y. (2023) · Medical Review · doi:10.1515/mr-2023-0035 · Cited by 9 · see citing works
O-GlcNAcase regulates pluripotency states of human embryonic stem cells
Liu, Q., Chen, C., Fan, Z., Song, H., Sha, Y., Yu, L., Wang, Y., Qin, W., & Yi, W. (2024) · Stem Cell Reports · doi:10.1016/j.stemcr.2024.05.009 · Cited by 8 · see citing works
Wu, H., & Wang, H. (2026) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-025-00942-0 · Cited by 8 · see citing works
KLF17 promotes human naive pluripotency through repressing MAPK3 and ZIC2
Wang, S., Hao, J., Zhang, C., Duan, F., Chiu, Y.-T., Shi, M., Huang, X., Yang, J., Cao, H., & Wang, Y. (2022) · Science China Life Sciences · doi:10.1007/s11427-021-2076-x · Cited by 8 · see citing works
Kshirsagar, A., Doroshev, S., Gorelik, A., Olender, T., Sapir, T., Tsuboi, D., Rosenhek‐Goldian, I., Malitsky, S., Itkin, M., Argoetti, A., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-38797-8 · Cited by 8 · see citing works
The nuclear matrix stabilizes primed-specific genes in human pluripotent stem cells
Ma, G., Fu, X., Zhou, L. B., Babarinde, I. A., Shi, L., Yang, W., Chen, J., Xiao, Z., Qiao, Y., Ma, L., et al. (2025) · Nature Cell Biology · doi:10.1038/s41556-024-01595-5 · Cited by 9 · see citing works
Deconstructing human peri-implantation embryogenesis based on embryos and embryoids
Ai, Z., Yin, Y., Niu, B., & Li, T. (2022) · Biology of Reproduction · doi:10.1093/biolre/ioac096 · Cited by 6 · see citing works
Short C-terminal Musashi-1 proteins regulate pluripotency states in embryonic stem cells
Chen, Y., Chen, Y., Li, Q., Liu, H., Han, J., Zhang, H., Cheng, L., & Lin, G. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.113308 · Cited by 7 · see citing works
In vitro models of human hypoblast and mouse primitive endoderm
Perera, M., & Brickman, J. M. (2023) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2023.102115 · Cited by 7 · see citing works
Viukov, S. V., Shani, T., Bayerl, J., Sheban, D., Stelzer, Y., Novershtern, N., & Hanna, J. H. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.20.492766 · Cited by 7 · see citing works
Human and Pig Pluripotent Stem Cells: From Cellular Products to Organogenesis and Beyond
Xuan, Y., Petersen, B., & Liu, P. (2023) · Cells · doi:10.3390/cells12162075 · Cited by 6 · see citing works
Matsuo‐Takasaki, M., Kambayashi, S., Hemmi, Y., Wakabayashi, T., Shimizu, T., An, Y., Ito, H., Takeuchi, K., Ibuki, M., Kawashima, T., et al. (2024) · eLife · doi:10.7554/elife.89724.3 · Cited by 5 · see citing works
EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency
Okubo, C., Nakamura, M., Sato, M., Shichino, Y., Mito, M., Takashima, Y., Iwasaki, S., & Takahashi, K. (2025) · Science Advances · doi:10.1126/sciadv.adq5484 · Cited by 5 · see citing works
H3K27ac Is Essential for Human Naive Pluripotency Modulated by m6A‐Driven EP300 Expression
An, C., Zhong, K., Kang, X., Zhang, Y., Shang, Y., Liu, H., Ji, Y., Zeng, J., Lin, J., Jin, L. G., et al. (2025) · Advanced Science · doi:10.1002/advs.202507549 · Cited by 5 · see citing works
Ross, C., Balestrini, P. A., Bates, L. E., Azami, T., Adakole, T., Semple, M. J., Salonna, M., Gyuris, R., Nichols, J., Fogarty, N. E., et al. (2025) · Journal of Cell Science · doi:10.1242/jcs.264257 · Cited by 5 · see citing works
Yang, J., Yang, Y., Zhang, X., Yan, C., Jiang, L., Zhang, D., & Jiang, W. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116414 · Cited by 5 · see citing works
The road to restore male fertility using in vitro -derived germ cells
Macedo, T., & Alves-Lopes, J. P. (2025) · Human Reproduction Update · doi:10.1093/humupd/dmaf029 · Cited by 5 · see citing works
Baral, I., Shirude, M. B., Jothi, D. L., Mukherjee, A., & Dutta, D. (2023) · Stem Cell Reviews and Reports · doi:10.1007/s12015-023-10513-5 · Cited by 5 · see citing works
Current Status of Synthetic Mammalian Embryo Models
Kim, H., & Kim, E. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms252312862 · Cited by 5 · see citing works
Hua, L., Peng, Y., Yan, L., Yuan, P., & Qiao, J. (2025) · Human Reproduction Update · doi:10.1093/humupd/dmaf006 · Cited by 4 · see citing works
ELABELA targets the MEK/ERK axis to enhance trophoblast invasion in early-onset preeclampsia
Wang, L., Wang, X., He, N., Yang, L., Zou, Y., Weng, Z., & Guo, L. (2025) · Scientific Reports · doi:10.1038/s41598-025-15533-4 · Cited by 4 · see citing works
Wang, D., Ming, H., Yang, D., Cui, X., Freeman, Z., Tsai, L., Wei, Z., Liu, L., Scatolin, G. N., Bennett, B., et al. (2026) · Cell Research · doi:10.1038/s41422-026-01276-y · Cited by 4 · see citing works
Alves-Lopes, J. P., Wong, F. C. K., & Surani, M. A. (2024) · Nature Protocols · doi:10.1038/s41596-023-00945-1 · Cited by 4 · see citing works
Parikh, C. R., Glenn, R. A., Shi, Y., Chatterjee, K., Kasliwal, K., Swanzey, E., Singer, S., Do, S. C., Zhan, Y. A., Furuta, Y., et al. (2025) · Stem Cell Reports · doi:10.1016/j.stemcr.2025.102450 · Cited by 4 · see citing works
- Authors
- Bayerl, J., Ayyash, M., Shani, T., Manor, Y. S., Gafni, O., Massarwa, R., Kalma, Y., Aguilera-Castrejon, A., Zerbib, M., Amir, H., Sheban, D., Geula, S., Mor, N., Weinberger, L., Naveh Tassa, S., Krupalnik, V., Oldak, B., Livnat, N., Tarazi, S., Tawil, S., Wildschutz, E., Ashouokhi, S., Lasman, L., Rotter, V., Hanna, S., Ben-Yosef, D., Novershtern, N., Viukov, S., & Hanna, J. H.
- Affiliations
- Weizmann Institute of Science (IL)
- Tel Aviv University (IL)
- Rambam Health Care Campus (IL)
- Corresponding author
- Bayerl, Jonathan
- Novershtern, Noa
- Hanna, Jacob H.
- ORCID
- Venue
- Cell stem cell
- Publisher
- Elsevier BV
- Published
- 2021-09
- Volume
- 28
- Issue
- 9
- Pages
- 1549-1565.e12
- ISSN
- 1875-9777 (ISSN-L)
- 1934-5909
- PMC
- PMC8423434
- OpenAlex
- W3159163097
- Cited by
- 165
- References
- 83
- Citations by year
- 2026: 24 · 2025: 36 · 2024: 29 · 2023: 39 · 2022: 26 · 2021: 9 · 2020: 1 · 2015: 1
- FWCI
- 8.08
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Cell stem cell (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- Israel Cancer Research Fund
- Flight Attendant Medical Research Institute
- Minerva Foundation
- Israel Science Foundation
- New York Stem Cell Foundation
- BSF
- European Research Council (ERC-CoG-2016 726497)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- naive pluripotency, human pluripotent stem cells, MEK/ERK signaling, Wnt/β-catenin signaling, protein kinase C signaling, Src signaling, trophoblast stem cells, extraembryonic endoderm, p53, DNA hypomethylation
- MeSH terms
- Animals, Cell Differentiation, Embryo, Mammalian, Humans, Trophoblasts, Signal Transduction, Pluripotent Stem Cells, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review