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Basis for drug selectivity of plasmepsin IX and X inhibition in Plasmodium falciparum and vivax
Open accessPublished version of a preprint
Abstract
Plasmepsins IX (PMIX) and X (PMX) are essential aspartyl proteases for Plasmodium spp. egress, invasion, and development. WM4 and WM382 inhibit PMIX and PMX in Plasmodium falciparum and P. vivax. WM4 inhibits PMX, while WM382 is a dual inhibitor of PMIX and PMX. To understand their function, we identified protein substrates. Enzyme kinetic and structural analyses identified interactions responsible for drug specificity. PMIX and PMX have similar substrate specificity; however, there are distinct differences for peptide and protein substrates. Differences in WM4 and WM382 binding for PMIX and PMX map to variations in the S' region and engagement of the active site S3 pocket. Structures of PMX reveal interactions and mechanistic detail of drug binding important for development of clinical candidates against these targets.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 31
- Adams, 2010, PHENIX: a comprehensive python-based system for macromolecular structure solution, Acta Cryst. D Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925 · DOI · Paper page
- Chen, 2011, An EGF-like protein forms a complex with PfRh5 and is required for invasion of human erythrocytes by Plasmodium falciparum, PLoS Pathog, 7, e1002199, 10.1371/journal.ppat.1002199 · DOI
- Cowman, 2016, Malaria: biology and disease, Cell, 167, 610, 10.1016/j.cell.2016.07.055 · DOI
- Duraisingh, 2003, Phenotypic variation of Plasmodium falciparum merozoite proteins directs receptor targeting for invasion of human erythrocytes, Embo J., 22, 1047, 10.1093/emboj/cdg096 · DOI
- Emsley, 2004, Coot: model-building tools for molecular graphics, Acta Cryst. D Biol. Crystallogr., 60, 2126, 10.1107/S0907444904019158 · DOI · Paper page
- Emsley, 2010, Features and development of coot, Acta Cryst. D Biol. Crystallogr., 66, 486, 10.1107/S0907444910007493 · DOI · Paper page
- Evans, 2011, An introduction to data reduction: space-group determination, scaling and intensity statistics, Acta Cryst. D Biol. Crystallogr., 67, 282, 10.1107/S090744491003982X · DOI
- Evans, 2013, How good are my data and what is the resolution?, Acta Crystallogr. D Biol. Crystallogr., 69, 1204, 10.1107/S0907444913000061 · DOI
- Favuzza, 2020, Dual plasmepsin-targeting antimalarial agents disrupt multiple stages of the malaria parasite life cycle, Cell Host Microbe, 27, 642, 10.1016/j.chom.2020.02.005 · DOI
- Giovannini, 2011, Independent roles of apical membrane antigen 1 and rhoptry neck proteins during host cell invasion by apicomplexa, Cell Host Microbe, 10, 591, 10.1016/j.chom.2011.10.012 · DOI
- Haase, 2008, Characterization of a conserved rhoptry-associated leucine zipper-like protein in the malaria parasite Plasmodium falciparum, Infect. Immun., 76, 879, 10.1128/IAI.00144-07 · DOI
- Hodder, 2015, Structural basis for plasmepsin V inhibition that blocks export of malaria proteins to human erythrocytes, Nat. Struct. Mol. Biol., 22, 590, 10.1038/nsmb.3061 · DOI
- Jain, 2017, A high density CHO-S transient transfection system: comparison of ExpiCHO and Expi293, Protein Expr. Purif., 134, 38, 10.1016/j.pep.2017.03.018 · DOI
- Kabsch, 2010, XDS, Acta Cryst. D Biol. Crystallogr., 66, 125, 10.1107/S0907444909047337 · DOI · Paper page
- Kesari, 2022, Structures of plasmepsin X from Plasmodium falciparum reveal a novel inactivation mechanism of the zymogen and molecular basis for binding of inhibitors in mature enzyme, Protein Sci., 31, 882, 10.1002/pro.4279 · DOI
- Khan, 1998, Molecular mechanisms for the conversion of zymogens to active proteolytic enzymes, Protein Sci., 7, 815, 10.1002/pro.5560070401 · DOI
- McCartney, 2019, FRET-based assays to determine calpain activity, Methods Mol. Biol., 1915, 39, 10.1007/978-1-4939-8988-1_4 · DOI
- McCoy, 2007, Phaser crystallographic software, J. Appl. Cryst., 40, 658, 10.1107/S0021889807021206 · DOI · Paper page
- Nasamu, 2017, Plasmepsins IX and X are essential and druggable mediators of malaria parasite egress and invasion, Science, 358, 518, 10.1126/science.aan1478 · DOI
- Navia, 1989, Three-dimensional structure of aspartyl protease from human immunodeficiency virus HIV-1, Nature, 337, 615, 10.1038/337615a0 · DOI
- O'Keeffe, 2005, A novel Sushi domain-containing protein of Plasmodium falciparum, Mol. Biochem. Parasitol., 140, 61, 10.1016/j.molbiopara.2004.12.003 · DOI
- Panjikar, 2005, Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment, Acta Crystallogr. D Biol. Crystallogr., 61, 449, 10.1107/S0907444905001307 · DOI
- Pino, 2017, A multistage antimalarial targets the plasmepsins IX and X essential for invasion and egress, Science, 358, 522, 10.1126/science.aaf8675 · DOI
- Proellocks, 2009, Characterisation of PfRON6, a Plasmodium falciparum rhoptry neck protein with a novel cysteine-rich domain, Int. J. Parasitol., 39, 683, 10.1016/j.ijpara.2008.11.002 · DOI
- Sahar, 2011, Plasmodium falciparum reticulocyte binding-like homologue protein 2 (PfRH2) is a key adhesive molecule involved in erythrocyte invasion, PLoS One, 6, e17102, 10.1371/journal.pone.0017102 · DOI
- Schneider, 1990, Sequence logos: a new way to display consensus sequences, Nucleic Acids Res., 18, 6097, 10.1093/nar/18.20.6097 · DOI
- Sherling, 2019, The Plasmodium falciparum rhoptry bulb protein RAMA plays an essential role in rhoptry neck morphogenesis and host red blood cell invasion, PLoS Pathog, 15, e1008049, 10.1371/journal.ppat.1008049 · DOI
- Tham, 2015, Plasmodium falciparum adhesins play an essential role in signalling and activation of invasion into human erythrocytes, PLoS Pathog, 11, e1005343, 10.1371/journal.ppat.1005343 · DOI
- Trager, 1976, Human malaria parasites in continuous culture, Science, 193, 673, 10.1126/science.781840 · DOI
- Wong, 2019, Structure of Plasmodium falciparum Rh5-CyRPA-Ripr invasion complex, Nature, 565, 118, 10.1038/s41586-018-0779-6 · DOI
- Yap, 2014, Conditional expression of apical membrane antigen 1 in Plasmodium falciparum shows it is required for erythrocyte invasion by merozoites, Cell Microbiol., 16, 642, 10.1111/cmi.12287 · DOI
Metadata
- Authors
- Hodder, A. N., Christensen, J., Scally, S., Triglia, T., Ngo, A., Birkinshaw, R. W., Bailey, B., Favuzza, P., Dietrich, M. H., Tham, W.-H., Czabotar, P. E., Lowes, K., Guo, Z., Murgolo, N., Lera Ruiz, M. D., McCauley, J. A., Sleebs, B. E., Olsen, D., & Cowman, A. F.
- Affiliations
- The University of Melbourne (AU)
- Walter and Eliza Hall Institute of Medical Research (AU)
- Merck & Co., Inc., Rahway, NJ, USA (United States) (US)
- Corresponding author
- Cowman, Alan F.
- ORCID
- Venue
- Structure
- Publisher
- Elsevier BV
- Published
- 2022-07
- Volume
- 30
- Issue
- 7
- Pages
- 947-961.e6
- ISSN
- 0969-2126 (ISSN-L)
- OpenAlex
- W4226110122
- Cited by
- 35
- References
- 1
- Citations by year
- 2026: 10 · 2025: 10 · 2024: 6 · 2023: 3 · 2022: 6
- FWCI
- 5.97
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 490 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Structure (publishedVersion)
- Research Square (acceptedVersion, cc-by)
- PubMed (publishedVersion)
- ANU Open Research (Australian National University) (submittedVersion)
- Funders
- Australian Nuclear Science and Technology Organisation
- Wellcome Trust (109662, 202749, /Z/15/Z, 202749/Z/16/Z, 109662/Z/15/Z)
- Australian Government
- Commonwealth Scientific and Industrial Research Organisation
- Australian Cancer Research Foundation
- Australian Synchrotron
- Medical Research Council
- National Health and Medical Research Council
- Topics
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Malaria Research and Control
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Protease and Inhibitor Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- Plasmodium falciparum, Plasmodium vivax, aspartyl protease inhibitors, drug selectivity, substrate specificity, S region, enzyme kinetics, protein-ligand binding, antimalarial drug candidates
- MeSH terms
- Kinetics, Plasmodium falciparum, Substrate Specificity, Protozoan Proteins, Aspartic Acid Endopeptidases
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