Understanding the role of gut microbiome–host metabolic signal disruption in health and disease

Holmes, Elaine, Li, Jia V., Athanasiou, Thanos, Ashrafian, Hutan, Nicholson, Jeremy K.·2011·Trends in Microbiology
DOI 10.1016/j.tim.2011.05.006

Cited by (546)

Items 501–546 of 546

  1. Integrated Metabolomics to Reveal the Impacts of Common Antibiotics based on Drug Resistance Prediction of Gut Microbiota
    Pei Gao, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  2. Effects of Full-cycle Exposure to Difenoconazole in Parental Zebrafish on the Liver-gut Axis of F0 and F1 Generations
    Tao Zhu, Hao Wang, Dong Li · 2022 · Research Square
  3. Effects of Full-cycle Exposure to Difenoconazole in Parental Zebrafish on the Liver-gut Axis of F0 and F1 Generations
    Tao Zhu, Siwen Wang, Dong Li · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  4. Peer Review #2 of "Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data (v0.1)"
    2013 · PeerJ
  5. Peer Review #1 of "Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data (v0.1)"
    2013 · PeerJ
  6. Effects of Full-Cycle Exposure to Difenoconazole in Parental Zebrafish on the Liver-Gut Axis of F0 and F1 Generations
    Tao Zhu, Siwen Wang, Dong Li · 2022 · SSRN Electronic Journal
  7. The Role of the Gut Microbiome and its Derived Mediators in Nonalcoholic Fatty Liver Disease
    Cosmas Rinaldi Adithya Lesmana, Meudia Syahidah, Irsan Hasan, Rino A. Gan · 2019 · European Medical Journal
  8. Enzyme promiscuity approaches to predict metabolic pathways in the human gut microbiota.
    Francesco Balzerani · 2023 · Deposito Adademico Digital Universidad De Navarra (University of Navarra)
  9. Elucidating the effects of selected antibiotics and artificial sweeteners on the intestinal microbiota and related fecal and plasma metabolomes of young adult Wistar rats
    Aishwarya Murali · 2023
  10. Caracterização do microbioma intestinal em pacientes com diferentes formas de epilepsia e nas encefalites autoimunes mediante análise metagenômica
    Diana Marcela Mejía Granados · 2022
  11. Antibiotics Combination Exposure Increase the Resistance to Aeromonas Hydrophila Infection By Improving The Microbial Network of Zebrafish
    Yilin Zhang, Xiaozhou Qi, Fei Luo, Wang Gaoxue, Fei Ling · 2024 · SSRN Electronic Journal
  12. Editorial: Plant secondary metabolites in food: absorption, metabolism and effects on glucolipid metabolism
    Qing‐Feng Zhang, Wenjun Wang, Shengbao Cai, Guodong Zheng · 2024 · Frontiers in Nutrition
  13. YAPAY TATLANDIRICILARIN SAĞLIKLI BESLENME VE HELAL GIDA AÇISINDAN DEĞERLENDİRİLMESİ
    Ömer Faruk Mızrak · 2024 · Helal ve Etik Araştırmalar Dergisi
  14. Gut-Brain Axis
    Tooba Mohammadi, Mehdi Mohebalizadeh · 2023 · Springer eBooks
  15. The Constellation of Risk Factors and Paraneoplastic Syndromes in Cholangiocarcinoma: Integrating the Endocrine Panel Amid Tumour-Related Biology (A Narrative Review)
    Mihai-Lucian Ciobica, Bianca-Andreea Sandulescu, Liana-Maria Chicea, Mihaela Iordache, Laura Groseanu, Mara Carşote, Claudiu Nistor, Ana-Maria Radu · 2024 · Biology
  16. Carlos Asensio and the dawn of molecular microbial ecology
    Vı́ctor de Lorenzo, Fernando Baquero, Alejandra Sánchez Aguilar · 2024 · International Microbiology
  17. Gut microbial metabolic flux disorder in hypertension
    Wenkai Lai, Yuchen Zhang, Meiling Wang, Shirong Lai, Qing Liu, Qi Luo, Quan Zou, Fenglong Yang · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  18. Understanding the Microbiome
    Jagriti Ramanathan · 2024 · Springer eBooks
  19. Tris(2-chloroethyl) phosphate alters gut microbiota and hepatic metabolism in freshwater turtles at environmentally relevant concentrations
    Jin-Dian Liu, Zi-Ying Wang, Lu-Ping Lou, Wen-Qi Xie, Jia-Jun Hao, Shu-Hang Shao, Shuai Liu, Shengmin Wu, Guo‐Hua Ding · 2025 · Journal of Hazardous Materials
  20. Goat-derived Lactobacillus amylovorus improved floppy kid syndrome via regulating gut microflora
    Cheng Cheng, Yan Zheng, Xin Wang, Jianping Tao, Darong Cheng · 2025 · BMC Veterinary Research
  21. Gut-Brain Axis
    Tooba Mohammadi, Mehdi Mohebalizadeh · 2025 · Springer eBooks
  22. Advancing the Exercise-Microbiome Axis: A Methodological and Bioinformatic Roadmap from Short-Read Standards to Long-Read Frontiers and Multi-Omics Integration
    Byunghun So, Junho Jang, Jinhan Park, Young-Min Park, Dongmin Kwak, KyeongJin Kim, Handol Lee, Chounghun Kang · 2025 · Exercise Science
  23. Exploring Common Core Targets of Type 2 Diabetes Mellitus and Ulcerative Colitis and Causal Relationship with Intestinal Flora Through Bioinformatics Analysis
    Yu Qian, Tao Han, Zuojing Li · 2025 · International Conference on Bioinformatics and Biomedical Technology (ICBBT)
  24. Additional file 8 of mbImpute: an accurate and robust imputation method for microbiome data
    Ruochen Jiang, Li, Wei Vivian, Jingyi Jessica Li · 2021 · Figshare
  25. Additional file 6 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer
    Anusha K. S. Dhanasiri, Alexander Jaramillo-Torres, Elvis Chikwati, Torunn Forberg, Åshild Krogdahl, Trond M. Kortner · 2024 · Figshare
  26. Additional file 3 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer
    Anusha K. S. Dhanasiri, Alexander Jaramillo-Torres, Elvis Chikwati, Torunn Forberg, Åshild Krogdahl, Trond M. Kortner · 2024 · Figshare
  27. Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer
    Anusha K. S. Dhanasiri, Alexander Jaramillo-Torres, Elvis Chikwati, Torunn Forberg, Åshild Krogdahl, Trond M. Kortner · 2024 · Figshare
  28. Additional file 1 of Salivary metabolites associated with a 5-year tooth loss identified in a population-based setting
    Leonie Andörfer, Birte Holtfreter, Stefan Weiß, Rutger Matthes, Vinay Pitchika, Schmidt, Carsten Oliver, Stefanie Samietz, Gabi Kastenmüller, Nauck, Matthias, Uwe Völker et al. · 2021 · Figshare
  29. Additional file 1 of Response of circulating metabolites to an oral glucose challenge and risk of cardiovascular disease and mortality in the community
    Daniel Gonzalez Izundegui, Miller, Patricia E., Ravi V. Shah, Clary B. Clish, Maura E. Walker, Gary F. Mitchell, Robert Edgardo Gerszten, Martin G. Larson, Ramachandran Srini Vasan, Matthew Gregory Nayor · 2022 · Figshare
  30. Additional file 1 of mbImpute: an accurate and robust imputation method for microbiome data
    Ruochen Jiang, Li, Wei Vivian, Li, Jingyi Jessica · 2021 · Figshare
  31. Additional file 1 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer
    Anusha K. S. Dhanasiri, Alexander Jaramillo-Torres, Elvis Chikwati, Torunn Forberg, Åshild Krogdahl, Trond M. Kortner · 2024 · Figshare
  32. Additional file 5 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer
    Anusha K. S. Dhanasiri, Alexander Jaramillo-Torres, Elvis Chikwati, Torunn Forberg, Åshild Krogdahl, Trond M. Kortner · 2024 · Figshare
  33. Additional file 4 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer
    Anusha K. S. Dhanasiri, Alexander Jaramillo-Torres, Elvis Chikwati, Torunn Forberg, Åshild Krogdahl, Trond M. Kortner · 2024 · Figshare
  34. Additional file 1 of Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
    Zhang, Xinyue, Shi, Linjing, Sun, Ting, Guo, Kun, Geng, Songmei · 2021 · Figshare
  35. Probiotic Administration Reshapes the Sex Differentiation Trajectory of Zebrafish under Perfluorobutanesulfonate Challenge
    Baili Sun, Chenyan Hu, Qi Wang, Xiangzhen Zhou, Yuefei Ruan, Naiyu Xie, Wenbing Zhang, Bingsheng Zhou, Lianguo Chen, Jianbo Shi · 2026 · Environmental Science & Technology
  36. Gas chromatography mass spectrometry based pharmacometabolomic assessment of formulation-dependent metabolic responses of levetiracetam
    Özge Cansın Zeki, Fatma Ilgaz, Cemil Can Eylem, Selin Seda Timur, Hakan Eroğlu, Hülya Gökmen-Özel, Emirhan Nemutlu · 2026 · Journal of Chromatography Open
  37. Effects of millets on diabetes and gut microbiome: a narrative review
    Manasapriya Dwadasi, B Madhu, SubbaRao V. Madhunapantula, Jamuna Bai Aswathanarayan, M. C. Manjunatha, K S Sahana, Mounika Sree Manivasagan, Chaithra Mallaiah · 2026 · Proceedings of the Indian National Science Academy
  38. A recent update on involvement of gut microbiota alterations in alzheimer’s disease pathogenesis
    Shahrokh Khoshsirat, Narges Bazgir, Sara Rahmati Roodsari, Alireza Zali, Somayeh Niknazar · 2024 · Neurophysiology
  39. Mapping the neuroimaging landscape of inflammatory bowel disease: a bibliometric analysis and systematic scoping review
    Y Zhang, Liyuan Gao, Jingjing Cao, T T Zhang, Wang X · 2026 · Frontiers in Neuroscience
  40. Decoding the Gut Microbiome–Metabolome Interface in Colorectal Cancer using Advanced Omics Technologies
    Naglaa M. Ammar, Abdel‐Hamid Z. Abdel‐Hamid, Zeinab A. El‐Gendy, Eslam G. Sadek, Abd El‐Nasser G. El‐Gendy, Abdelsamed I. Elshamy · 2026 · Science and Technology Nexus
  41. Novel Distance Regression for Repeated Outcomes With Missing Data: Applications to Longitudinal and Crossover Studies of Microbiome Beta‐Diversity
    Jinyuan Liu, Ke Xu, Jane F. Ferguson, Kaidi Kang, Yue Wang, Yuqi Qiu, Lucy Shao, Shengjia Tu, Tanya T. Nguyen, Tuo Lin et al. · 2026 · Statistics in Medicine
  42. Research Progress on Gut Microbiota and Choline: a Bibliometric Review
    Zhongyue Zhang, Yangsheng Li, Zhen Zhang, Chenchen Wu, Sijing Chen, Dongsheng Li, Chi Liu, Tao Deng, Peiling Cai · 2026 · SN Comprehensive Clinical Medicine
  43. Alternate day fasting attenuates metabolic dysfunction-associated arterial thrombotic risk via increasing indole-3-propionic acid
    Ruijia Feng, Weiqi Feng, Yuyan Luo, Guiyan Peng, Wenchao Yang, Ting Long, Meifeng Cen, Yunchong Liu, Litai Wei, Kan Huang et al. · 2026 · Cell Reports
  44. A Vaginal Microbiome Pharmacology Foundation Model for Microbiome-Based Drug Development and Reproductive Health Insights
    Alexander M. Bergendorf, Raymond Krajci, Alexis Heath, Jordan Small, Debjyoti Thakur, Ashley Yoon, Jason E. Elliott, Romel D. Mackelprang, Elizabeth Irungu, Timothy R. Muwonge et al. · 2026 · Cellular and Molecular Bioengineering
  45. Transcriptional responses of parental and adaptively evolved Lactobacillus plantarum and fecal metabolic changes during mono-colonization of germ-free mice
    Chongshu Dang, Yongjun Xia, Lianzhong Ai, Zhiqiang Xiong, Guangqiang Wang · 2026 · Microbiological Research
  46. BindingDB Entry 50000419: Microbiota-Host Transgenomic Metabolism, Bioactive Molecules from the Inside.
    BindingDB · 2019 · UC San Diego